Wall clock time and date at job start Mon Mar 30 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47484 * 2 1 4 4 H 1.09000 * 109.47245 * 55.00239 * 3 2 1 5 5 C 1.50698 * 109.47453 * 175.00090 * 3 2 1 6 6 H 1.08003 * 119.99872 * 119.99695 * 5 3 2 7 7 C 1.37880 * 120.00057 * 300.00448 * 5 3 2 8 8 N 1.31511 * 119.99652 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99894 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47171 * 89.99589 * 9 7 5 11 11 H 1.48499 * 109.46758 * 210.00083 * 9 7 5 12 12 H 1.48497 * 109.47008 * 329.99670 * 9 7 5 13 13 N 1.46507 * 109.47188 * 295.00132 * 3 2 1 14 14 C 1.39676 * 119.99552 * 84.99751 * 13 3 2 15 15 C 1.38909 * 120.07363 * 179.97438 * 14 13 3 16 16 C 1.38099 * 119.93044 * 180.02562 * 15 14 13 17 17 C 1.38288 * 120.07223 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.92687 * 180.02562 * 17 16 15 19 19 C 1.53000 * 109.47083 * 239.99766 * 18 17 16 20 20 C 1.52997 * 109.47078 * 119.99892 * 18 17 16 21 21 C 1.38287 * 120.14758 * 0.27494 * 17 16 15 22 22 C 1.38103 * 120.07544 * 359.45380 * 21 17 16 23 23 H 1.09004 * 109.46669 * 300.00061 * 1 2 3 24 24 H 1.09003 * 109.47037 * 59.99487 * 1 2 3 25 25 H 1.08993 * 109.47442 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46669 * 239.99939 * 2 1 3 27 27 H 1.09003 * 109.47037 * 120.00512 * 2 1 3 28 28 H 0.97002 * 119.99476 * 180.02562 * 8 7 5 29 29 H 0.96997 * 120.00108 * 264.99728 * 13 3 2 30 30 H 1.08005 * 120.03396 * 0.04398 * 15 14 13 31 31 H 1.07999 * 119.97120 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.46959 * 359.97438 * 18 17 16 33 33 H 1.09004 * 109.46724 * 60.00424 * 19 18 17 34 34 H 1.09001 * 109.47194 * 179.97438 * 19 18 17 35 35 H 1.08992 * 109.47399 * 299.99938 * 19 18 17 36 36 H 1.08998 * 109.47533 * 179.97438 * 20 18 17 37 37 H 1.08996 * 109.47853 * 300.00179 * 20 18 17 38 38 H 1.09002 * 109.47153 * 60.00207 * 20 18 17 39 39 H 1.08004 * 119.96348 * 179.70236 * 21 17 16 40 40 H 1.08005 * 120.03628 * 180.27982 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0051 0.8798 1.3810 10 1 6.4429 2.1127 2.0835 11 1 6.4391 -0.3113 2.1543 12 1 6.6131 0.8393 0.0268 13 7 1.6525 2.0975 -1.2518 14 6 0.3909 2.6850 -1.3711 15 6 0.0220 3.3070 -2.5571 16 6 -1.2259 3.8874 -2.6715 17 6 -2.1080 3.8494 -1.6072 18 6 -3.4691 4.4834 -1.7359 19 6 -3.6224 5.5808 -0.6809 20 6 -4.5489 3.4199 -1.5261 21 6 -1.7421 3.2356 -0.4233 22 6 -0.4978 2.6483 -0.3041 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8293 -0.0606 2.9501 29 1 2.2719 2.1232 -1.9978 30 1 0.7102 3.3364 -3.3889 31 1 -1.5133 4.3715 -3.5932 32 1 -3.5750 4.9180 -2.7299 33 1 -2.8531 6.3385 -0.8305 34 1 -4.6067 6.0397 -0.7743 35 1 -3.5164 5.1466 0.3131 36 1 -5.5334 3.8784 -1.6187 37 1 -4.4398 2.6380 -2.2775 38 1 -4.4429 2.9857 -0.5319 39 1 -2.4316 3.2119 0.4076 40 1 -0.2143 2.1651 0.6193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036679251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:48 Heat of formation + Delta-G solvation = 5.629539 kcal Electronic energy + Delta-G solvation = -18071.100660 eV Core-core repulsion = 15463.779339 eV Total energy + Delta-G solvation = -2607.321321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.24846 -36.68138 -34.45419 -32.36590 -31.20859 -30.02348 -28.30724 -26.99214 -26.01428 -23.07275 -22.65204 -21.84308 -19.77609 -19.17477 -17.29840 -16.01733 -15.31258 -15.09946 -14.57233 -14.01608 -13.78965 -13.64653 -13.19874 -12.97044 -12.90604 -12.40603 -12.25331 -12.13515 -11.82157 -11.52112 -11.30590 -11.06316 -10.98554 -10.85804 -10.80538 -10.44826 -10.29654 -10.14346 -10.07816 -9.62923 -9.18093 -8.91056 -8.44826 -8.24325 -6.38151 -6.16512 -4.24751 2.07617 2.27439 3.22373 3.29318 3.31780 4.25977 4.50114 4.63584 5.02082 5.09144 5.15120 5.41165 5.54606 5.58563 5.71438 5.72721 5.93345 5.96112 5.98412 6.13838 6.18921 6.25472 6.34136 6.38980 6.39964 6.52771 6.55855 6.63972 6.93241 6.98858 7.03634 7.12945 7.24280 7.29140 7.45599 7.60388 7.70872 7.85090 8.09990 8.40410 8.73781 8.93373 9.42377 10.88660 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.004994 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.883222 B = 5605.022552 C = 5771.650639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.273 3.727 4 H 0.039 0.961 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.726 5.726 14 C 0.235 3.765 15 C -0.220 4.220 16 C -0.071 4.071 17 C -0.165 4.165 18 C -0.043 4.043 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.069 4.069 22 C -0.198 4.198 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.027 0.973 26 H 0.033 0.967 27 H 0.098 0.902 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 5.152 -5.847 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.170 3.830 4 H 0.057 0.943 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.126 3.874 15 C -0.244 4.244 16 C -0.090 4.090 17 C -0.168 4.168 18 C -0.061 4.061 19 C -0.200 4.200 20 C -0.199 4.199 21 C -0.088 4.088 22 C -0.221 4.221 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.719 4.928 -5.445 12.994 hybrid contribution 1.316 -0.107 -0.151 1.329 sum -9.404 4.820 -5.596 11.958 Atomic orbital electron populations 1.22201 0.98953 0.99058 1.00627 1.22020 0.92248 1.00413 1.02462 1.18718 0.94398 0.88726 0.81120 0.94292 1.21236 0.90906 1.38582 1.06147 0.92189 1.24870 0.98618 0.94749 0.95402 1.69870 1.35147 1.37924 1.09388 0.86462 0.84906 0.77645 0.78208 1.20547 1.21056 1.19883 1.45540 1.12243 1.59157 1.17805 1.18021 0.86424 0.89968 0.92991 1.20463 0.98390 1.08066 0.97483 1.20548 0.93071 0.98114 0.97254 1.19301 0.96174 1.06120 0.95167 1.19879 0.92299 0.94975 0.98960 1.21857 1.00664 0.98335 0.99127 1.21852 0.97417 0.98696 1.01980 1.20584 0.95513 0.96311 0.96411 1.21065 0.94670 1.06619 0.99731 0.93443 0.93164 0.95346 0.94790 0.88351 0.92585 0.77893 0.87285 0.87533 0.91565 0.92786 0.93304 0.92625 0.93307 0.92805 0.92636 0.87349 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.22 37.16 0.31 -2.76 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.58 2.20 -69.08 -0.15 6.43 16 4 H 0.04 1.04 6.49 -51.93 -0.34 0.70 16 5 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.14 11.29 55.43 0.63 -23.52 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.73 -15.19 5.18 -53.29 -0.28 -15.46 16 14 C 0.24 4.55 5.49 -83.79 -0.46 4.09 16 15 C -0.22 -3.77 9.90 -39.38 -0.39 -4.16 16 16 C -0.07 -1.10 9.66 -39.61 -0.38 -1.48 16 17 C -0.17 -2.49 4.79 -104.59 -0.50 -2.99 16 18 C -0.04 -0.52 3.09 -91.77 -0.28 -0.80 16 19 C -0.14 -1.60 9.00 37.16 0.33 -1.26 16 20 C -0.14 -1.58 9.01 37.16 0.33 -1.25 16 21 C -0.07 -1.14 8.70 -39.61 -0.34 -1.48 16 22 C -0.20 -3.75 6.72 -39.38 -0.26 -4.02 16 23 H 0.05 0.95 6.35 -51.93 -0.33 0.62 16 24 H 0.05 1.00 5.39 -51.93 -0.28 0.72 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.39 7.67 8.55 -40.82 -0.35 7.32 16 30 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.11 1.39 7.94 -52.49 -0.42 0.98 16 32 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.64 7.37 -51.93 -0.38 0.25 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.63 7.40 -51.93 -0.38 0.25 16 39 H 0.11 1.59 7.09 -52.48 -0.37 1.22 16 40 H 0.13 2.69 4.00 -52.48 -0.21 2.48 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -26.45 310.92 -8.61 -35.06 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.28 Total: 9.17 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -2.34 Total: -25.48 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.35 Total: -38.98 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.45 -8.61 -35.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.692 kcal (2) G-P(sol) polarization free energy of solvation -26.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds