Wall clock time and date at job start Mon Mar 30 2020 06:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47169 * 2 1 4 4 H 1.09009 * 109.47127 * 305.00520 * 3 2 1 5 5 C 1.50692 * 109.47194 * 185.00480 * 3 2 1 6 6 H 1.08006 * 120.00111 * 240.00048 * 5 3 2 7 7 C 1.37883 * 120.00407 * 59.99847 * 5 3 2 8 8 N 1.31514 * 119.99376 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00206 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47336 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47147 * 120.00365 * 9 7 5 12 12 H 1.48499 * 109.47252 * 239.99857 * 9 7 5 13 13 N 1.46500 * 109.47013 * 65.00109 * 3 2 1 14 14 C 1.39676 * 120.00062 * 274.99722 * 13 3 2 15 15 C 1.38906 * 120.07171 * 179.97438 * 14 13 3 16 16 C 1.38111 * 119.92343 * 179.97438 * 15 14 13 17 17 C 1.38288 * 120.07382 * 0.28047 * 16 15 14 18 18 C 1.50698 * 119.92407 * 179.69843 * 17 16 15 19 19 C 1.52994 * 109.46895 * 120.00180 * 18 17 16 20 20 C 1.53002 * 109.47072 * 240.00168 * 18 17 16 21 21 C 1.38286 * 120.14755 * 359.44532 * 17 16 15 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 17 16 23 23 H 1.09000 * 109.47166 * 299.99853 * 1 2 3 24 24 H 1.09001 * 109.47653 * 59.99623 * 1 2 3 25 25 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46683 * 240.00363 * 2 1 3 27 27 H 1.08994 * 109.47292 * 120.00387 * 2 1 3 28 28 H 0.97006 * 119.99702 * 180.02562 * 8 7 5 29 29 H 0.96994 * 119.99675 * 95.00150 * 13 3 2 30 30 H 1.08000 * 120.03932 * 359.96119 * 15 14 13 31 31 H 1.08002 * 119.96028 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47135 * 359.97438 * 18 17 16 33 33 H 1.09000 * 109.47499 * 59.99892 * 19 18 17 34 34 H 1.09001 * 109.47371 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47425 * 299.99999 * 19 18 17 36 36 H 1.08993 * 109.47349 * 59.99850 * 20 18 17 37 37 H 1.09001 * 109.46754 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.46880 * 299.99837 * 20 18 17 39 39 H 1.08002 * 119.96005 * 180.25011 * 21 17 16 40 40 H 1.07998 * 120.03717 * 179.70130 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4060 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3814 10 1 6.5988 1.5442 -0.1933 11 1 6.4961 -0.5190 -1.4630 12 1 6.3998 1.6157 -2.6094 13 7 1.6525 2.0975 1.2518 14 6 0.3909 2.6850 1.3712 15 6 0.0217 3.3060 2.5576 16 6 -1.2262 3.8864 2.6721 17 6 -2.1100 3.8449 1.6093 18 6 -3.4733 4.4734 1.7402 19 6 -3.6327 5.5702 0.6855 20 6 -4.5493 3.4057 1.5323 21 6 -1.7435 3.2325 0.4248 22 6 -0.4970 2.6501 0.3035 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8291 -0.0609 -2.9501 29 1 2.2720 2.1231 1.9977 30 1 0.7097 3.3346 3.3897 31 1 -1.5141 4.3690 3.5944 32 1 -3.5796 4.9069 2.7347 33 1 -3.5266 5.1363 -0.3088 34 1 -4.6186 6.0252 0.7804 35 1 -2.8662 6.3309 0.8336 36 1 -4.4357 2.6243 2.2836 37 1 -5.5354 3.8604 1.6265 38 1 -4.4432 2.9718 0.5380 39 1 -2.4346 3.2053 -0.4047 40 1 -0.2133 2.1677 -0.6201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036679252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:50 Heat of formation + Delta-G solvation = 5.527012 kcal Electronic energy + Delta-G solvation = -18071.429924 eV Core-core repulsion = 15464.104157 eV Total energy + Delta-G solvation = -2607.325767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.24833 -36.68179 -34.45472 -32.36644 -31.20790 -30.02367 -28.30728 -26.99239 -26.01570 -23.07427 -22.65304 -21.84281 -19.77651 -19.17572 -17.29923 -16.01935 -15.31440 -15.09968 -14.57106 -14.01596 -13.79044 -13.64627 -13.19973 -12.97088 -12.90503 -12.40935 -12.25317 -12.13549 -11.82386 -11.52308 -11.31123 -11.05635 -11.00021 -10.85940 -10.79146 -10.44151 -10.29623 -10.14801 -10.07950 -9.63121 -9.17692 -8.90774 -8.45140 -8.24352 -6.38205 -6.16783 -4.24902 2.07541 2.27429 3.21155 3.29533 3.32789 4.25961 4.50061 4.63537 5.02063 5.09110 5.14925 5.41152 5.54607 5.58533 5.71421 5.72697 5.93337 5.96072 5.98398 6.13802 6.18900 6.25401 6.34064 6.38969 6.39943 6.52712 6.55807 6.63936 6.93188 6.98771 7.03575 7.12908 7.24219 7.29102 7.45539 7.60468 7.70777 7.85120 8.09874 8.40352 8.73884 8.93409 9.42274 10.88421 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.004994 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.056915 B = 5605.064052 C = 5772.675457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.273 3.727 4 H 0.039 0.961 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.726 5.726 14 C 0.235 3.765 15 C -0.220 4.220 16 C -0.071 4.071 17 C -0.165 4.165 18 C -0.043 4.043 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.069 4.069 22 C -0.198 4.198 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.098 0.902 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 5.147 5.867 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.170 3.830 4 H 0.057 0.943 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.126 3.874 15 C -0.244 4.244 16 C -0.090 4.090 17 C -0.168 4.168 18 C -0.061 4.061 19 C -0.200 4.200 20 C -0.199 4.199 21 C -0.088 4.088 22 C -0.221 4.221 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.116 0.884 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.727 4.929 5.468 13.010 hybrid contribution 1.311 -0.124 0.145 1.325 sum -9.416 4.805 5.612 11.969 Atomic orbital electron populations 1.22200 0.98952 0.99056 1.00626 1.22020 0.92251 1.00414 1.02462 1.18724 0.94419 0.88726 0.81127 0.94285 1.21275 0.90909 1.38496 1.06121 0.92130 1.24874 0.98632 0.94776 0.95392 1.69881 1.35055 1.37970 1.09424 0.86410 0.84912 0.77782 0.78128 1.19766 1.20871 1.20853 1.45537 1.12247 1.59156 1.17804 1.18020 0.86429 0.89969 0.92982 1.20465 0.98414 1.08050 0.97474 1.20551 0.93065 0.98111 0.97261 1.19300 0.96113 1.06157 0.95188 1.19878 0.92289 0.94988 0.98957 1.21856 1.00655 0.98343 0.99126 1.21854 0.97438 0.98676 1.01982 1.20585 0.95482 0.96345 0.96404 1.21062 0.94652 1.06655 0.99709 0.93170 0.93445 0.95347 0.88353 0.94789 0.92641 0.77894 0.87281 0.87532 0.91565 0.92624 0.93304 0.92786 0.92805 0.93305 0.92637 0.87350 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.22 37.16 0.31 -2.76 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.57 2.20 -69.08 -0.15 6.42 16 4 H 0.04 1.04 6.48 -51.92 -0.34 0.70 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.14 11.29 55.43 0.63 -23.52 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.73 -15.19 5.18 -53.29 -0.28 -15.46 16 14 C 0.24 4.55 5.48 -83.79 -0.46 4.09 16 15 C -0.22 -3.77 9.90 -39.38 -0.39 -4.16 16 16 C -0.07 -1.10 9.66 -39.61 -0.38 -1.48 16 17 C -0.16 -2.49 4.78 -104.59 -0.50 -2.99 16 18 C -0.04 -0.52 3.09 -91.77 -0.28 -0.80 16 19 C -0.14 -1.60 9.00 37.15 0.33 -1.26 16 20 C -0.14 -1.58 9.01 37.16 0.33 -1.25 16 21 C -0.07 -1.14 8.70 -39.61 -0.34 -1.48 16 22 C -0.20 -3.75 6.72 -39.38 -0.26 -4.02 16 23 H 0.05 1.00 5.39 -51.93 -0.28 0.72 16 24 H 0.05 0.95 6.35 -51.93 -0.33 0.62 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.39 7.67 8.55 -40.82 -0.35 7.32 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.11 1.39 7.94 -52.49 -0.42 0.98 16 32 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 33 H 0.05 0.64 7.37 -51.93 -0.38 0.25 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.63 7.40 -51.93 -0.38 0.25 16 39 H 0.11 1.59 7.09 -52.49 -0.37 1.22 16 40 H 0.13 2.68 4.01 -52.49 -0.21 2.47 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -26.48 310.93 -8.61 -35.09 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.28 Total: 9.14 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -2.34 Total: -25.47 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.35 Total: -38.98 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.48 -8.61 -35.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.617 kcal (2) G-P(sol) polarization free energy of solvation -26.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds