Wall clock time and date at job start Mon Mar 30 2020 06:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47169 * 2 1 4 4 H 1.09009 * 109.47127 * 305.00520 * 3 2 1 5 5 C 1.50692 * 109.47194 * 185.00480 * 3 2 1 6 6 H 1.08006 * 120.00111 * 240.00048 * 5 3 2 7 7 C 1.37883 * 120.00407 * 59.99847 * 5 3 2 8 8 N 1.31514 * 119.99376 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00206 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47336 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47147 * 120.00365 * 9 7 5 12 12 H 1.48499 * 109.47252 * 239.99857 * 9 7 5 13 13 N 1.46500 * 109.47013 * 65.00109 * 3 2 1 14 14 C 1.39676 * 120.00062 * 274.99722 * 13 3 2 15 15 C 1.38906 * 120.07171 * 179.97438 * 14 13 3 16 16 C 1.38111 * 119.92343 * 179.97438 * 15 14 13 17 17 C 1.38288 * 120.07382 * 0.28047 * 16 15 14 18 18 C 1.50698 * 119.92407 * 179.69843 * 17 16 15 19 19 C 1.52994 * 109.46895 * 120.00180 * 18 17 16 20 20 C 1.53002 * 109.47072 * 240.00168 * 18 17 16 21 21 C 1.38286 * 120.14755 * 359.44532 * 17 16 15 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 17 16 23 23 H 1.09000 * 109.47166 * 299.99853 * 1 2 3 24 24 H 1.09001 * 109.47653 * 59.99623 * 1 2 3 25 25 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46683 * 240.00363 * 2 1 3 27 27 H 1.08994 * 109.47292 * 120.00387 * 2 1 3 28 28 H 0.97006 * 119.99702 * 180.02562 * 8 7 5 29 29 H 0.96994 * 119.99675 * 95.00150 * 13 3 2 30 30 H 1.08000 * 120.03932 * 359.96119 * 15 14 13 31 31 H 1.08002 * 119.96028 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.47135 * 359.97438 * 18 17 16 33 33 H 1.09000 * 109.47499 * 59.99892 * 19 18 17 34 34 H 1.09001 * 109.47371 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47425 * 299.99999 * 19 18 17 36 36 H 1.08993 * 109.47349 * 59.99850 * 20 18 17 37 37 H 1.09001 * 109.46754 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.46880 * 299.99837 * 20 18 17 39 39 H 1.08002 * 119.96005 * 180.25011 * 21 17 16 40 40 H 1.07998 * 120.03717 * 179.70130 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4060 0.3375 -2.1734 9 14 6.0049 0.8801 -1.3814 10 1 6.5988 1.5442 -0.1933 11 1 6.4961 -0.5190 -1.4630 12 1 6.3998 1.6157 -2.6094 13 7 1.6525 2.0975 1.2518 14 6 0.3909 2.6850 1.3712 15 6 0.0217 3.3060 2.5576 16 6 -1.2262 3.8864 2.6721 17 6 -2.1100 3.8449 1.6093 18 6 -3.4733 4.4734 1.7402 19 6 -3.6327 5.5702 0.6855 20 6 -4.5493 3.4057 1.5323 21 6 -1.7435 3.2325 0.4248 22 6 -0.4970 2.6501 0.3035 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8291 -0.0609 -2.9501 29 1 2.2720 2.1231 1.9977 30 1 0.7097 3.3346 3.3897 31 1 -1.5141 4.3690 3.5944 32 1 -3.5796 4.9069 2.7347 33 1 -3.5266 5.1363 -0.3088 34 1 -4.6186 6.0252 0.7804 35 1 -2.8662 6.3309 0.8336 36 1 -4.4357 2.6243 2.2836 37 1 -5.5354 3.8604 1.6265 38 1 -4.4432 2.9718 0.5380 39 1 -2.4346 3.2053 -0.4047 40 1 -0.2133 2.1677 -0.6201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036679252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:50 Heat of formation + Delta-G solvation = -7.084098 kcal Electronic energy + Delta-G solvation = -18071.976783 eV Core-core repulsion = 15464.104157 eV Total energy + Delta-G solvation = -2607.872626 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62098 -38.15881 -35.86101 -34.12463 -32.82939 -31.43546 -29.88078 -27.85431 -27.70625 -24.88375 -24.00494 -23.25191 -21.21114 -20.59847 -19.03644 -17.65801 -17.06379 -16.37570 -16.13577 -15.50324 -15.18748 -15.05479 -14.49750 -14.30741 -14.14760 -13.93129 -13.54819 -13.50071 -13.16599 -13.12699 -12.84649 -12.76215 -12.66556 -12.20062 -12.00323 -11.92745 -11.88300 -11.56506 -11.42248 -11.26738 -10.96413 -10.65270 -10.31123 -9.59446 -8.19500 -7.88050 -6.33371 0.72784 0.93232 1.39717 1.41854 1.52740 2.36844 3.01782 3.10853 3.16552 4.00070 4.06825 4.27920 4.34325 4.49122 4.49577 4.58957 4.68877 4.73946 4.76526 4.85251 4.91203 5.00373 5.10113 5.10627 5.13860 5.23194 5.28911 5.33706 5.40864 5.47842 5.51475 5.57409 5.65000 5.71919 5.79429 5.88371 6.02203 6.16311 6.30126 6.59155 6.91027 7.27001 7.40012 8.86495 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038555 B = 0.004994 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.056915 B = 5605.064052 C = 5772.675457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.284 3.716 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.058 0.942 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.280 1.280 13 N -0.733 5.733 14 C 0.207 3.793 15 C -0.219 4.219 16 C -0.072 4.072 17 C -0.154 4.154 18 C -0.043 4.043 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.073 4.073 22 C -0.215 4.215 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.265 0.735 29 H 0.391 0.609 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.122 0.878 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 6.210 7.253 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.180 3.820 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.076 0.924 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.789 3.211 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.358 5.358 14 C 0.101 3.899 15 C -0.242 4.242 16 C -0.091 4.091 17 C -0.156 4.156 18 C -0.061 4.061 19 C -0.199 4.199 20 C -0.198 4.198 21 C -0.092 4.092 22 C -0.238 4.238 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.225 0.775 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.084 6.013 6.874 15.147 hybrid contribution 1.589 -0.368 -0.253 1.651 sum -10.494 5.644 6.621 13.632 Atomic orbital electron populations 1.22031 0.96639 0.99975 1.00677 1.21850 0.94283 0.99627 1.00660 1.18323 0.93188 0.88847 0.81609 0.97595 1.21616 0.92265 1.38544 1.06280 0.92350 1.25649 1.02856 0.94429 0.95094 1.70006 1.36685 1.38490 1.09816 0.85426 0.79799 0.77834 0.78057 1.19261 1.20383 1.20622 1.45209 1.13337 1.60494 1.16764 1.18234 0.85953 0.91445 0.94245 1.20710 0.99438 1.07201 0.96889 1.20951 0.92197 0.97370 0.98580 1.19733 0.97478 1.04228 0.94158 1.19970 0.90508 0.95392 1.00235 1.21846 1.01791 0.97874 0.98387 1.21840 0.98185 0.98323 1.01478 1.20772 0.94683 0.96023 0.97677 1.20999 0.95967 1.07888 0.98954 0.92774 0.93748 0.93819 0.91111 0.95344 0.92566 0.77520 0.85885 0.84363 0.89927 0.93277 0.91130 0.93344 0.93226 0.91168 0.93260 0.85966 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.22 71.98 0.59 -5.03 16 2 C -0.12 -6.03 5.45 30.59 0.17 -5.86 16 3 C 0.28 14.27 2.20 44.24 0.10 14.37 16 4 H 0.01 0.35 6.48 -2.38 -0.02 0.34 16 5 C -0.55 -29.62 8.73 25.60 0.22 -29.40 16 6 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 7 C 0.02 1.07 5.29 84.66 0.45 1.52 16 8 N -0.91 -51.16 11.29 21.45 0.24 -50.91 16 9 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.73 -31.52 5.18 -322.51 -1.67 -33.19 16 14 C 0.21 8.08 5.48 38.21 0.21 8.29 16 15 C -0.22 -7.19 9.90 22.40 0.22 -6.97 16 16 C -0.07 -2.04 9.66 22.25 0.21 -1.82 16 17 C -0.15 -4.26 4.78 -19.84 -0.09 -4.35 16 18 C -0.04 -0.89 3.09 -11.54 -0.04 -0.93 16 19 C -0.14 -2.74 9.00 71.98 0.65 -2.09 16 20 C -0.14 -2.69 9.01 71.98 0.65 -2.04 16 21 C -0.07 -2.33 8.70 22.25 0.19 -2.13 16 22 C -0.22 -8.29 6.72 22.40 0.15 -8.14 16 23 H 0.05 2.18 5.39 -2.39 -0.01 2.17 16 24 H 0.04 1.83 6.35 -2.39 -0.02 1.82 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 3.81 5.95 -2.39 -0.01 3.80 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 29 H 0.39 15.81 8.55 -92.71 -0.79 15.02 16 30 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.14 3.02 7.94 -2.91 -0.02 2.99 16 32 H 0.08 1.50 7.87 -2.39 -0.02 1.48 16 33 H 0.05 1.01 7.37 -2.39 -0.02 0.99 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.00 7.40 -2.39 -0.02 0.98 16 39 H 0.12 3.48 7.09 -2.91 -0.02 3.45 16 40 H 0.11 4.64 4.01 -2.91 -0.01 4.63 16 Total: -1.00 -57.63 310.93 4.51 -53.12 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.23 Total: 30.85 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 3.68 Total: -44.58 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -1.43 Total: -84.10 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -57.63 4.51 -53.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.034 kcal (2) G-P(sol) polarization free energy of solvation -57.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds