Wall clock time and date at job start Mon Mar 30 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 H 1.09005 * 109.46748 * 54.84938 * 3 2 1 5 5 C 1.50704 * 109.46982 * 174.84513 * 3 2 1 6 6 H 1.08002 * 119.99778 * 119.99900 * 5 3 2 7 7 C 1.37878 * 119.99931 * 300.00409 * 5 3 2 8 8 N 1.31517 * 120.00052 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99803 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47121 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47008 * 119.99861 * 9 7 5 12 12 H 1.48502 * 109.47159 * 239.99956 * 9 7 5 13 13 N 1.46499 * 109.47412 * 294.84723 * 3 2 1 14 14 C 1.39675 * 119.99893 * 157.77720 * 13 3 2 15 15 C 1.38931 * 120.07500 * 355.34096 * 14 13 3 16 16 C 1.38080 * 119.92673 * 179.72112 * 15 14 13 17 17 C 1.38306 * 120.07240 * 0.02562 * 16 15 14 18 18 C 1.38267 * 120.15271 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.96645 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46982 * 300.00029 * 19 18 17 21 21 C 1.52999 * 109.47319 * 59.99878 * 19 18 17 22 22 C 1.38130 * 120.07127 * 0.02562 * 18 17 16 23 23 H 1.08997 * 109.47151 * 295.44061 * 1 2 3 24 24 H 1.09005 * 109.47099 * 55.43501 * 1 2 3 25 25 H 1.08994 * 109.47590 * 175.43795 * 1 2 3 26 26 H 1.08999 * 109.46695 * 240.00089 * 2 1 3 27 27 H 1.08993 * 109.46976 * 120.00303 * 2 1 3 28 28 H 0.97001 * 119.99752 * 180.02562 * 8 7 5 29 29 H 0.96997 * 120.00006 * 337.77614 * 13 3 2 30 30 H 1.07997 * 120.03940 * 359.74601 * 15 14 13 31 31 H 1.07994 * 119.96929 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.92561 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.47603 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47003 * 60.00198 * 20 19 18 35 35 H 1.09000 * 109.46960 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47264 * 299.99946 * 20 19 18 37 37 H 1.09001 * 109.47368 * 300.00232 * 21 19 18 38 38 H 1.08998 * 109.47007 * 60.00036 * 21 19 18 39 39 H 1.09000 * 109.47744 * 180.02562 * 21 19 18 40 40 H 1.07995 * 120.03604 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9822 0.8403 5 6 3.5417 1.4444 0.1277 6 1 4.1489 1.8882 -0.6474 7 6 4.1402 0.8794 1.2338 8 7 3.4007 0.3383 2.1773 9 14 6.0015 0.8811 1.3917 10 1 6.5983 1.5453 0.2051 11 1 6.3934 1.6178 2.6201 12 1 6.4925 -0.5179 1.4756 13 7 1.6557 2.0964 -1.2533 14 6 1.5808 3.4896 -1.3198 15 6 1.7757 4.2527 -0.1753 16 6 1.7067 5.6299 -0.2456 17 6 1.4435 6.2499 -1.4536 18 6 1.2490 5.4935 -2.5946 19 6 0.9619 6.1733 -3.9085 20 6 -0.3221 6.9965 -3.7869 21 6 2.1271 7.0964 -4.2705 22 6 1.3167 4.1153 -2.5312 23 1 -0.3633 0.4414 0.9280 24 1 -0.3633 0.5831 -0.8463 25 1 -0.3634 -1.0243 -0.0817 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8218 -0.0588 2.9556 29 1 1.4531 1.5619 -2.0370 30 1 1.9812 3.7692 0.7683 31 1 1.8585 6.2238 0.6435 32 1 1.3897 7.3273 -1.5058 33 1 0.8383 5.4211 -4.6875 34 1 -0.1989 7.7489 -3.0078 35 1 -0.5295 7.4886 -4.7371 36 1 -1.1522 6.3390 -3.5290 37 1 2.2503 7.8488 -3.4914 38 1 3.0418 6.5100 -4.3571 39 1 1.9193 7.5885 -5.2206 40 1 1.1651 3.5251 -3.4229 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036680647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:53 Heat of formation + Delta-G solvation = -1.184808 kcal Electronic energy + Delta-G solvation = -17961.616247 eV Core-core repulsion = 15353.999434 eV Total energy + Delta-G solvation = -2607.616813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.04913 -36.50298 -34.59881 -32.49789 -31.30860 -29.58973 -27.87583 -27.02091 -26.35100 -23.29099 -22.46285 -21.70722 -20.04599 -18.90044 -16.49953 -16.38894 -15.50386 -15.04080 -14.66137 -14.02902 -13.84551 -13.38072 -13.12883 -13.03955 -12.86776 -12.46933 -12.24032 -12.03276 -11.79639 -11.37287 -11.29551 -11.10485 -11.04357 -10.93487 -10.77458 -10.43280 -10.24721 -9.99079 -9.92210 -9.73918 -9.68541 -8.73383 -8.43983 -8.06217 -6.48596 -6.00903 -4.15935 2.13537 2.40395 3.25462 3.34094 3.39490 4.33748 4.58514 4.63714 5.01959 5.07071 5.20564 5.38189 5.60650 5.69381 5.70577 5.83327 5.92709 5.95689 6.05012 6.10702 6.13120 6.17855 6.30925 6.36290 6.37186 6.40923 6.61985 6.69168 6.80765 6.95320 7.05165 7.19956 7.25621 7.35629 7.48511 7.66223 7.71349 7.91149 8.27051 8.39400 8.83173 8.93881 9.51720 10.95022 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.005938 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.325087 B = 4714.242178 C = 5328.301669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.273 3.727 4 H 0.039 0.961 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.730 5.730 14 C 0.245 3.755 15 C -0.190 4.190 16 C -0.076 4.076 17 C -0.199 4.199 18 C -0.037 4.037 19 C -0.054 4.054 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.218 4.218 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.106 0.894 28 H 0.262 0.738 29 H 0.383 0.617 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 8.272 -8.216 12.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.057 0.943 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.352 5.352 14 C 0.137 3.863 15 C -0.213 4.213 16 C -0.095 4.095 17 C -0.220 4.220 18 C -0.038 4.038 19 C -0.073 4.073 20 C -0.198 4.198 21 C -0.198 4.198 22 C -0.242 4.242 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.124 0.876 28 H 0.072 0.928 29 H 0.215 0.785 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.365 8.042 -7.821 12.435 hybrid contribution 1.053 -0.357 -0.086 1.116 sum -4.312 7.685 -7.907 11.839 Atomic orbital electron populations 1.21816 0.98850 0.99216 1.00475 1.21854 0.92098 0.99644 1.03130 1.18737 0.93947 0.89070 0.81216 0.94326 1.21636 0.91733 1.37259 1.05372 0.92303 1.24911 0.98266 0.95103 0.95585 1.69859 1.34857 1.38784 1.09568 0.86502 0.85600 0.77639 0.78094 1.19827 1.20937 1.21028 1.45386 1.73007 1.01975 1.14847 1.17865 0.90718 0.84819 0.92922 1.20836 1.08587 0.93359 0.98481 1.20788 0.97579 0.94182 0.96922 1.20410 1.10431 0.98325 0.92790 1.19324 0.97687 0.92683 0.94093 1.20064 0.95229 0.97152 0.94845 1.21824 0.97034 0.99775 1.01133 1.21823 0.98066 0.99266 1.00671 1.20348 1.13715 0.93939 0.96158 0.93643 0.94262 0.94694 0.94531 0.87602 0.92818 0.78525 0.85357 0.87295 0.87818 0.91157 0.92501 0.93086 0.92692 0.92496 0.92604 0.93090 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.85 37.16 0.37 -2.41 16 2 C -0.13 -2.88 5.30 -26.73 -0.14 -3.02 16 3 C 0.27 6.48 1.68 -69.08 -0.12 6.37 16 4 H 0.04 1.02 6.45 -51.93 -0.34 0.68 16 5 C -0.52 -13.83 8.70 -34.44 -0.30 -14.13 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.33 11.29 55.43 0.63 -23.70 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.73 -15.17 4.65 -53.29 -0.25 -15.42 16 14 C 0.25 4.96 6.59 -83.79 -0.55 4.41 16 15 C -0.19 -3.91 9.18 -39.38 -0.36 -4.27 16 16 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 17 C -0.20 -3.23 8.71 -39.55 -0.34 -3.58 16 18 C -0.04 -0.60 4.78 -104.65 -0.50 -1.10 16 19 C -0.05 -0.69 3.09 -91.77 -0.28 -0.98 16 20 C -0.14 -1.56 9.01 37.16 0.33 -1.23 16 21 C -0.14 -1.63 9.01 37.16 0.33 -1.29 16 22 C -0.22 -3.88 9.52 -39.38 -0.37 -4.25 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.70 7.62 -51.93 -0.40 0.30 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.11 2.66 5.95 -51.93 -0.31 2.36 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.38 7.23 8.57 -40.82 -0.35 6.88 16 30 H 0.13 2.91 6.21 -52.49 -0.33 2.58 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.10 1.46 7.09 -52.49 -0.37 1.09 16 33 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 34 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.65 7.38 -51.93 -0.38 0.26 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 1.72 7.94 -52.49 -0.42 1.31 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -26.88 321.19 -8.84 -35.72 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.61 Total: 8.15 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -2.43 Total: -25.64 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.38 Total: -39.12 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.88 -8.84 -35.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036680647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.533 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds