Wall clock time and date at job start Mon Mar 30 2020 06:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 H 1.09005 * 109.46748 * 54.84938 * 3 2 1 5 5 C 1.50704 * 109.46982 * 174.84513 * 3 2 1 6 6 H 1.08002 * 119.99778 * 119.99900 * 5 3 2 7 7 C 1.37878 * 119.99931 * 300.00409 * 5 3 2 8 8 N 1.31517 * 120.00052 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99803 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47121 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47008 * 119.99861 * 9 7 5 12 12 H 1.48502 * 109.47159 * 239.99956 * 9 7 5 13 13 N 1.46499 * 109.47412 * 294.84723 * 3 2 1 14 14 C 1.39675 * 119.99893 * 157.77720 * 13 3 2 15 15 C 1.38931 * 120.07500 * 355.34096 * 14 13 3 16 16 C 1.38080 * 119.92673 * 179.72112 * 15 14 13 17 17 C 1.38306 * 120.07240 * 0.02562 * 16 15 14 18 18 C 1.38267 * 120.15271 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.96645 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.46982 * 300.00029 * 19 18 17 21 21 C 1.52999 * 109.47319 * 59.99878 * 19 18 17 22 22 C 1.38130 * 120.07127 * 0.02562 * 18 17 16 23 23 H 1.08997 * 109.47151 * 295.44061 * 1 2 3 24 24 H 1.09005 * 109.47099 * 55.43501 * 1 2 3 25 25 H 1.08994 * 109.47590 * 175.43795 * 1 2 3 26 26 H 1.08999 * 109.46695 * 240.00089 * 2 1 3 27 27 H 1.08993 * 109.46976 * 120.00303 * 2 1 3 28 28 H 0.97001 * 119.99752 * 180.02562 * 8 7 5 29 29 H 0.96997 * 120.00006 * 337.77614 * 13 3 2 30 30 H 1.07997 * 120.03940 * 359.74601 * 15 14 13 31 31 H 1.07994 * 119.96929 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.92561 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.47603 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47003 * 60.00198 * 20 19 18 35 35 H 1.09000 * 109.46960 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.47264 * 299.99946 * 20 19 18 37 37 H 1.09001 * 109.47368 * 300.00232 * 21 19 18 38 38 H 1.08998 * 109.47007 * 60.00036 * 21 19 18 39 39 H 1.09000 * 109.47744 * 180.02562 * 21 19 18 40 40 H 1.07995 * 120.03604 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9822 0.8403 5 6 3.5417 1.4444 0.1277 6 1 4.1489 1.8882 -0.6474 7 6 4.1402 0.8794 1.2338 8 7 3.4007 0.3383 2.1773 9 14 6.0015 0.8811 1.3917 10 1 6.5983 1.5453 0.2051 11 1 6.3934 1.6178 2.6201 12 1 6.4925 -0.5179 1.4756 13 7 1.6557 2.0964 -1.2533 14 6 1.5808 3.4896 -1.3198 15 6 1.7757 4.2527 -0.1753 16 6 1.7067 5.6299 -0.2456 17 6 1.4435 6.2499 -1.4536 18 6 1.2490 5.4935 -2.5946 19 6 0.9619 6.1733 -3.9085 20 6 -0.3221 6.9965 -3.7869 21 6 2.1271 7.0964 -4.2705 22 6 1.3167 4.1153 -2.5312 23 1 -0.3633 0.4414 0.9280 24 1 -0.3633 0.5831 -0.8463 25 1 -0.3634 -1.0243 -0.0817 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8218 -0.0588 2.9556 29 1 1.4531 1.5619 -2.0370 30 1 1.9812 3.7692 0.7683 31 1 1.8585 6.2238 0.6435 32 1 1.3897 7.3273 -1.5058 33 1 0.8383 5.4211 -4.6875 34 1 -0.1989 7.7489 -3.0078 35 1 -0.5295 7.4886 -4.7371 36 1 -1.1522 6.3390 -3.5290 37 1 2.2503 7.8488 -3.4914 38 1 3.0418 6.5100 -4.3571 39 1 1.9193 7.5885 -5.2206 40 1 1.1651 3.5251 -3.4229 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036680647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:53 Heat of formation + Delta-G solvation = -13.771919 kcal Electronic energy + Delta-G solvation = -17962.162065 eV Core-core repulsion = 15353.999434 eV Total energy + Delta-G solvation = -2608.162631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45968 -38.05957 -35.95751 -34.30581 -33.01394 -30.97507 -29.42913 -28.16958 -27.88173 -25.05765 -23.83813 -23.11433 -21.67691 -20.30622 -18.51278 -17.83913 -17.05611 -16.69971 -16.12406 -15.61980 -15.05486 -14.93039 -14.50363 -14.37523 -14.26280 -13.99178 -13.61417 -13.36492 -13.18618 -12.98243 -12.80084 -12.77150 -12.52565 -12.26834 -12.12936 -11.99713 -11.73503 -11.61076 -11.48979 -11.38395 -11.26981 -10.50354 -10.42802 -9.46680 -8.28252 -7.84880 -6.27116 0.70967 0.96888 1.35959 1.39253 1.49678 2.38860 2.98555 3.12937 3.18525 3.90806 4.07236 4.30320 4.43484 4.44337 4.52504 4.56289 4.61087 4.71254 4.75774 4.83482 4.90472 4.95733 5.05722 5.07858 5.14604 5.17686 5.27379 5.32479 5.40042 5.45083 5.49060 5.55601 5.69920 5.70576 5.87549 5.95021 5.97439 6.26075 6.28828 6.61652 6.93888 7.26437 7.45590 8.88823 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.005938 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.325087 B = 4714.242178 C = 5328.301669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.284 3.716 4 H 0.006 0.994 5 C -0.533 4.533 6 H 0.040 0.960 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.276 1.276 13 N -0.732 5.732 14 C 0.222 3.778 15 C -0.221 4.221 16 C -0.079 4.079 17 C -0.191 4.191 18 C -0.033 4.033 19 C -0.054 4.054 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.221 4.221 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.264 0.736 29 H 0.391 0.609 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 9.791 -10.093 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.180 3.820 4 H 0.024 0.976 5 C -0.572 4.572 6 H 0.059 0.941 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.357 5.357 14 C 0.115 3.885 15 C -0.244 4.244 16 C -0.098 4.098 17 C -0.212 4.212 18 C -0.033 4.033 19 C -0.073 4.073 20 C -0.195 4.195 21 C -0.196 4.196 22 C -0.244 4.244 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.225 0.775 30 H 0.112 0.888 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.768 9.581 -9.715 14.814 hybrid contribution 1.150 -0.708 0.452 1.425 sum -4.617 8.872 -9.264 13.633 Atomic orbital electron populations 1.21682 0.96137 1.00871 1.00495 1.21680 0.94502 0.98195 1.01798 1.18359 0.92294 0.89662 0.81644 0.97599 1.21810 0.93267 1.37117 1.05056 0.94117 1.25555 1.01944 0.94942 0.95381 1.69967 1.36173 1.39187 1.09844 0.85635 0.81196 0.77834 0.77725 1.20195 1.20611 1.20149 1.45078 1.74062 1.02463 1.14083 1.18110 0.92001 0.84491 0.93883 1.20743 1.11352 0.94842 0.97491 1.21031 0.97002 0.93137 0.98611 1.20755 1.08592 0.99842 0.91969 1.19800 0.95556 0.92134 0.95835 1.20152 0.96646 0.97647 0.92830 1.21806 0.95640 0.99485 1.02547 1.21815 0.96864 0.98914 1.02052 1.20595 1.13128 0.95036 0.95604 0.94604 0.93039 0.92323 0.94164 0.90468 0.92710 0.77518 0.88818 0.85556 0.84888 0.90549 0.92239 0.90817 0.93356 0.92242 0.93795 0.90727 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.85 71.98 0.71 -4.38 16 2 C -0.12 -5.63 5.30 30.60 0.16 -5.47 16 3 C 0.28 14.09 1.68 44.25 0.07 14.17 16 4 H 0.01 0.35 6.45 -2.38 -0.02 0.34 16 5 C -0.53 -29.39 8.70 25.60 0.22 -29.16 16 6 H 0.04 2.34 7.81 -2.91 -0.02 2.31 16 7 C 0.02 1.17 5.29 84.65 0.45 1.61 16 8 N -0.91 -51.26 11.29 21.45 0.24 -51.02 16 9 Si 0.95 44.05 29.54 68.60 2.03 46.07 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.73 -31.23 4.65 -322.50 -1.50 -32.73 16 14 C 0.22 9.14 6.59 38.21 0.25 9.39 16 15 C -0.22 -9.48 9.18 22.40 0.21 -9.27 16 16 C -0.08 -2.79 10.04 22.25 0.22 -2.57 16 17 C -0.19 -5.80 8.71 22.29 0.19 -5.61 16 18 C -0.03 -0.97 4.78 -19.88 -0.10 -1.07 16 19 C -0.05 -1.20 3.09 -11.54 -0.04 -1.24 16 20 C -0.14 -2.54 9.01 71.98 0.65 -1.90 16 21 C -0.14 -2.72 9.01 71.98 0.65 -2.07 16 22 C -0.22 -7.62 9.52 22.40 0.21 -7.40 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.80 7.62 -2.38 -0.02 1.78 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 4.01 5.95 -2.39 -0.01 3.99 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.39 14.89 8.57 -92.71 -0.79 14.09 16 30 H 0.09 4.60 6.21 -2.91 -0.02 4.58 16 31 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.13 3.26 7.09 -2.91 -0.02 3.24 16 33 H 0.08 1.62 7.87 -2.39 -0.02 1.61 16 34 H 0.06 1.07 7.38 -2.39 -0.02 1.05 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.13 7.38 -2.39 -0.02 1.11 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 3.76 7.94 -2.91 -0.02 3.74 16 Total: -1.00 -59.34 321.19 4.85 -54.49 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.21 Total: 28.15 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 3.87 Total: -44.96 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.26 Total: -83.74 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -59.34 4.85 -54.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036680647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.713 kcal (2) G-P(sol) polarization free energy of solvation -59.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds