Wall clock time and date at job start Mon Mar 30 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47417 * 2 1 4 4 H 1.08999 * 109.46440 * 305.80511 * 3 2 1 5 5 C 1.50699 * 109.46984 * 185.80684 * 3 2 1 6 6 H 1.07998 * 120.00206 * 335.21365 * 5 3 2 7 7 C 1.37876 * 119.99900 * 155.21979 * 5 3 2 8 8 N 1.31513 * 119.99898 * 355.33898 * 7 5 3 9 9 Si 1.86799 * 120.00208 * 175.33600 * 7 5 3 10 10 H 1.48507 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47125 * 119.99846 * 9 7 5 12 12 H 1.48495 * 109.47217 * 239.99899 * 9 7 5 13 13 N 1.46501 * 109.46765 * 65.80292 * 3 2 1 14 14 C 1.39671 * 120.00185 * 274.99788 * 13 3 2 15 15 C 1.38931 * 120.07467 * 0.02562 * 14 13 3 16 16 C 1.38085 * 119.92761 * 179.97438 * 15 14 13 17 17 C 1.38314 * 120.07129 * 359.97438 * 16 15 14 18 18 C 1.38265 * 120.15003 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.96419 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47092 * 300.00745 * 19 18 17 21 21 C 1.53004 * 109.46958 * 60.00202 * 19 18 17 22 22 C 1.38131 * 120.07340 * 359.75597 * 18 17 16 23 23 H 1.08999 * 109.46685 * 300.00447 * 1 2 3 24 24 H 1.08998 * 109.46854 * 59.99598 * 1 2 3 25 25 H 1.08995 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46685 * 239.99553 * 2 1 3 27 27 H 1.09003 * 109.46721 * 119.99931 * 2 1 3 28 28 H 0.97004 * 120.00178 * 5.26786 * 8 7 5 29 29 H 0.97001 * 119.99385 * 95.01008 * 13 3 2 30 30 H 1.07999 * 120.03766 * 359.95483 * 15 14 13 31 31 H 1.07992 * 119.96737 * 179.97438 * 16 15 14 32 32 H 1.08002 * 119.92499 * 179.97438 * 17 16 15 33 33 H 1.08994 * 109.47554 * 180.02562 * 19 18 17 34 34 H 1.08998 * 109.47534 * 59.99312 * 20 19 18 35 35 H 1.09000 * 109.47220 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.47128 * 299.99410 * 20 19 18 37 37 H 1.08990 * 109.46955 * 60.00411 * 21 19 18 38 38 H 1.09000 * 109.46965 * 180.02562 * 21 19 18 39 39 H 1.08998 * 109.46879 * 300.00205 * 21 19 18 40 40 H 1.07998 * 120.03658 * 180.27520 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5944 1.9854 -0.8335 5 6 3.5403 1.4448 -0.1438 6 1 4.1138 0.5838 0.1662 7 6 4.1806 2.5462 -0.6709 8 7 3.4774 3.5571 -1.1327 9 14 6.0468 2.6027 -0.7290 10 1 6.5981 1.3503 -0.1520 11 1 6.4943 2.7367 -2.1386 12 1 6.5315 3.7657 0.0568 13 7 1.6692 2.0916 1.2599 14 6 0.4094 2.6785 1.3987 15 6 -0.4933 2.6473 0.3431 16 6 -1.7382 3.2281 0.4837 17 6 -2.0869 3.8400 1.6741 18 6 -1.1910 3.8728 2.7267 19 6 -1.5755 4.5401 4.0219 20 6 -1.8949 6.0136 3.7614 21 6 -2.8079 3.8469 4.6065 22 6 0.0543 3.2898 2.5941 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5125 3.5623 -1.0335 29 1 2.2986 2.1138 1.9976 30 1 -0.2217 2.1696 -0.5867 31 1 -2.4402 3.2046 -0.3365 32 1 -3.0611 4.2939 1.7814 33 1 -0.7483 4.4673 4.7279 34 1 -2.7220 6.0868 3.0553 35 1 -2.1735 6.4962 4.6982 36 1 -1.0169 6.5075 3.3450 37 1 -2.5805 2.7973 4.7921 38 1 -3.0864 4.3298 5.5431 39 1 -3.6350 3.9201 3.9004 40 1 0.7520 3.3120 3.4182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036680649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:56 Heat of formation + Delta-G solvation = -1.540490 kcal Electronic energy + Delta-G solvation = -18236.860043 eV Core-core repulsion = 15629.227807 eV Total energy + Delta-G solvation = -2607.632237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.22967 -36.74142 -34.50786 -32.40551 -31.80525 -29.35519 -28.38392 -27.01993 -25.80415 -23.18312 -22.77703 -21.72918 -20.33569 -18.82953 -17.25426 -16.41096 -15.36382 -14.87399 -14.61549 -13.93794 -13.84782 -13.75147 -13.25787 -13.11794 -12.93914 -12.80600 -12.29527 -12.19271 -11.79702 -11.56237 -11.15140 -11.05927 -10.99502 -10.84897 -10.76567 -10.44256 -10.37150 -10.26532 -10.20347 -9.75678 -9.06088 -8.78324 -8.47351 -8.07344 -6.55605 -6.33735 -4.36046 2.08650 2.38238 3.35019 3.36792 3.51357 4.36494 4.52153 4.57025 5.00203 5.06482 5.37277 5.38050 5.57184 5.67128 5.70678 5.76897 5.83827 5.90938 5.92557 5.98460 6.05235 6.09799 6.12798 6.29491 6.33457 6.37318 6.57305 6.61372 6.63666 6.69368 6.83856 6.95660 7.14073 7.16183 7.25415 7.31750 7.64846 7.86065 8.24967 8.54553 8.67624 8.94991 9.44282 10.82265 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.006075 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.277046 B = 4607.806140 C = 5155.198999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.245 3.755 4 H 0.045 0.955 5 C -0.609 4.609 6 H 0.055 0.945 7 C 0.032 3.968 8 N -0.891 5.891 9 Si 1.074 2.926 10 H -0.288 1.288 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.719 5.719 14 C 0.237 3.763 15 C -0.209 4.209 16 C -0.075 4.075 17 C -0.203 4.203 18 C -0.032 4.032 19 C -0.056 4.056 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.219 4.219 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.033 0.967 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.277 0.723 29 H 0.385 0.615 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 0.113 7.206 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.144 3.856 4 H 0.062 0.938 5 C -0.648 4.648 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.525 5.525 9 Si 0.901 3.099 10 H -0.213 1.213 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.342 5.342 14 C 0.127 3.873 15 C -0.232 4.232 16 C -0.094 4.094 17 C -0.223 4.223 18 C -0.033 4.033 19 C -0.074 4.074 20 C -0.198 4.198 21 C -0.197 4.197 22 C -0.243 4.243 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.219 0.781 30 H 0.142 0.858 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.023 0.891 6.454 10.335 hybrid contribution -1.009 -0.897 0.795 1.567 sum -9.032 -0.006 7.249 11.581 Atomic orbital electron populations 1.22221 0.97665 0.99626 1.01731 1.21920 0.93831 0.99800 1.00600 1.18866 0.95345 0.88115 0.83250 0.93752 1.22132 0.91160 1.04094 1.47393 0.92669 1.25970 1.07159 0.92466 0.92073 1.70705 1.09636 1.32380 1.39769 0.83485 0.73870 0.75604 0.76896 1.21348 1.21104 1.21235 1.46717 1.11268 1.58492 1.17700 1.18168 0.86835 0.89621 0.92630 1.20911 0.94797 1.08014 0.99474 1.20729 0.95701 0.96354 0.96642 1.20371 0.99712 1.07861 0.94396 1.19354 0.93339 0.96190 0.94418 1.20078 0.98107 0.94711 0.94506 1.21822 1.01829 0.95151 1.01009 1.21816 0.97470 1.00369 1.00051 1.20393 0.97835 1.08513 0.97542 0.91998 0.93188 0.94797 0.92476 0.93449 0.91170 0.78051 0.85813 0.87448 0.87825 0.91108 0.92524 0.93043 0.92563 0.92727 0.93045 0.92528 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 8.23 37.16 0.31 -2.54 16 2 C -0.12 -2.55 5.58 -26.73 -0.15 -2.70 16 3 C 0.25 5.81 1.92 -69.08 -0.13 5.67 16 4 H 0.04 1.16 5.02 -51.93 -0.26 0.89 16 5 C -0.61 -16.02 8.50 -34.44 -0.29 -16.32 16 6 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 8 N -0.89 -25.90 13.62 55.43 0.76 -25.14 16 9 Si 1.07 24.13 29.91 -169.99 -5.08 19.05 16 10 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.72 -15.80 5.19 -53.29 -0.28 -16.08 16 14 C 0.24 4.87 5.52 -83.79 -0.46 4.41 16 15 C -0.21 -4.12 6.71 -39.38 -0.26 -4.38 16 16 C -0.08 -1.31 10.04 -39.61 -0.40 -1.70 16 17 C -0.20 -3.31 8.71 -39.54 -0.34 -3.65 16 18 C -0.03 -0.53 4.78 -104.65 -0.50 -1.03 16 19 C -0.06 -0.74 3.09 -91.77 -0.28 -1.02 16 20 C -0.14 -1.70 9.01 37.16 0.33 -1.36 16 21 C -0.14 -1.61 9.01 37.16 0.33 -1.27 16 22 C -0.22 -4.08 9.52 -39.38 -0.37 -4.46 16 23 H 0.06 1.18 5.36 -51.93 -0.28 0.90 16 24 H 0.05 0.89 6.41 -51.93 -0.33 0.56 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.28 8.12 6.66 -40.82 -0.27 7.85 16 29 H 0.39 8.38 8.61 -40.82 -0.35 8.03 16 30 H 0.12 2.53 3.99 -52.49 -0.21 2.32 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.10 1.47 7.09 -52.49 -0.37 1.10 16 33 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 34 H 0.06 0.66 7.38 -51.93 -0.38 0.28 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 40 H 0.11 1.88 7.94 -52.49 -0.42 1.47 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -27.67 312.69 -8.47 -36.15 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.26 Total: 10.90 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -2.32 Total: -29.59 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.48 Total: -41.22 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.67 -8.47 -36.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036680649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.606 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds