Wall clock time and date at job start Mon Mar 30 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47417 * 2 1 4 4 H 1.08999 * 109.46440 * 305.80511 * 3 2 1 5 5 C 1.50699 * 109.46984 * 185.80684 * 3 2 1 6 6 H 1.07998 * 120.00206 * 335.21365 * 5 3 2 7 7 C 1.37876 * 119.99900 * 155.21979 * 5 3 2 8 8 N 1.31513 * 119.99898 * 355.33898 * 7 5 3 9 9 Si 1.86799 * 120.00208 * 175.33600 * 7 5 3 10 10 H 1.48507 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47125 * 119.99846 * 9 7 5 12 12 H 1.48495 * 109.47217 * 239.99899 * 9 7 5 13 13 N 1.46501 * 109.46765 * 65.80292 * 3 2 1 14 14 C 1.39671 * 120.00185 * 274.99788 * 13 3 2 15 15 C 1.38931 * 120.07467 * 0.02562 * 14 13 3 16 16 C 1.38085 * 119.92761 * 179.97438 * 15 14 13 17 17 C 1.38314 * 120.07129 * 359.97438 * 16 15 14 18 18 C 1.38265 * 120.15003 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.96419 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47092 * 300.00745 * 19 18 17 21 21 C 1.53004 * 109.46958 * 60.00202 * 19 18 17 22 22 C 1.38131 * 120.07340 * 359.75597 * 18 17 16 23 23 H 1.08999 * 109.46685 * 300.00447 * 1 2 3 24 24 H 1.08998 * 109.46854 * 59.99598 * 1 2 3 25 25 H 1.08995 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46685 * 239.99553 * 2 1 3 27 27 H 1.09003 * 109.46721 * 119.99931 * 2 1 3 28 28 H 0.97004 * 120.00178 * 5.26786 * 8 7 5 29 29 H 0.97001 * 119.99385 * 95.01008 * 13 3 2 30 30 H 1.07999 * 120.03766 * 359.95483 * 15 14 13 31 31 H 1.07992 * 119.96737 * 179.97438 * 16 15 14 32 32 H 1.08002 * 119.92499 * 179.97438 * 17 16 15 33 33 H 1.08994 * 109.47554 * 180.02562 * 19 18 17 34 34 H 1.08998 * 109.47534 * 59.99312 * 20 19 18 35 35 H 1.09000 * 109.47220 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.47128 * 299.99410 * 20 19 18 37 37 H 1.08990 * 109.46955 * 60.00411 * 21 19 18 38 38 H 1.09000 * 109.46965 * 180.02562 * 21 19 18 39 39 H 1.08998 * 109.46879 * 300.00205 * 21 19 18 40 40 H 1.07998 * 120.03658 * 180.27520 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5944 1.9854 -0.8335 5 6 3.5403 1.4448 -0.1438 6 1 4.1138 0.5838 0.1662 7 6 4.1806 2.5462 -0.6709 8 7 3.4774 3.5571 -1.1327 9 14 6.0468 2.6027 -0.7290 10 1 6.5981 1.3503 -0.1520 11 1 6.4943 2.7367 -2.1386 12 1 6.5315 3.7657 0.0568 13 7 1.6692 2.0916 1.2599 14 6 0.4094 2.6785 1.3987 15 6 -0.4933 2.6473 0.3431 16 6 -1.7382 3.2281 0.4837 17 6 -2.0869 3.8400 1.6741 18 6 -1.1910 3.8728 2.7267 19 6 -1.5755 4.5401 4.0219 20 6 -1.8949 6.0136 3.7614 21 6 -2.8079 3.8469 4.6065 22 6 0.0543 3.2898 2.5941 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5125 3.5623 -1.0335 29 1 2.2986 2.1138 1.9976 30 1 -0.2217 2.1696 -0.5867 31 1 -2.4402 3.2046 -0.3365 32 1 -3.0611 4.2939 1.7814 33 1 -0.7483 4.4673 4.7279 34 1 -2.7220 6.0868 3.0553 35 1 -2.1735 6.4962 4.6982 36 1 -1.0169 6.5075 3.3450 37 1 -2.5805 2.7973 4.7921 38 1 -3.0864 4.3298 5.5431 39 1 -3.6350 3.9201 3.9004 40 1 0.7520 3.3120 3.4182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036680649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:55 Heat of formation + Delta-G solvation = -15.333687 kcal Electronic energy + Delta-G solvation = -18237.458161 eV Core-core repulsion = 15629.227807 eV Total energy + Delta-G solvation = -2608.230355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68159 -38.27225 -35.89076 -34.27841 -33.39343 -30.73325 -29.97341 -27.92845 -27.59400 -25.00120 -24.16955 -23.14134 -21.89850 -20.25319 -19.17253 -17.86458 -16.90963 -16.37386 -16.04320 -15.70862 -15.38230 -15.14083 -14.63607 -14.50698 -14.30629 -14.22574 -13.94578 -13.33078 -12.98028 -12.94689 -12.77948 -12.64559 -12.43872 -12.31046 -12.03748 -12.01908 -11.95235 -11.73085 -11.47252 -11.24386 -10.93783 -10.55940 -10.44360 -9.47729 -8.70338 -7.94572 -6.50508 0.66402 0.94009 1.51710 1.58281 1.75883 2.50285 2.78682 3.12543 3.39566 3.85555 4.02472 4.18391 4.26013 4.33654 4.38817 4.49313 4.50899 4.57864 4.70186 4.77918 4.82892 4.86137 4.92148 5.03103 5.05748 5.11106 5.13504 5.20182 5.32660 5.33672 5.39770 5.44456 5.46174 5.63908 5.80301 5.87229 5.93637 6.12628 6.26589 6.49762 6.87920 7.23723 7.37630 8.67140 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.006075 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.277046 B = 4607.806140 C = 5155.198999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.252 3.748 4 H 0.016 0.984 5 C -0.618 4.618 6 H 0.051 0.949 7 C -0.015 4.015 8 N -0.922 5.922 9 Si 1.119 2.881 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.728 5.728 14 C 0.214 3.786 15 C -0.227 4.227 16 C -0.077 4.077 17 C -0.195 4.195 18 C -0.030 4.030 19 C -0.057 4.057 20 C -0.138 4.138 21 C -0.136 4.136 22 C -0.231 4.231 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.262 0.738 29 H 0.383 0.617 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 0.377 8.472 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C 0.150 3.850 4 H 0.033 0.967 5 C -0.656 4.656 6 H 0.069 0.931 7 C -0.217 4.217 8 N -0.557 5.557 9 Si 0.941 3.059 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.107 3.893 15 C -0.249 4.249 16 C -0.096 4.096 17 C -0.215 4.215 18 C -0.031 4.031 19 C -0.075 4.075 20 C -0.196 4.196 21 C -0.193 4.193 22 C -0.255 4.255 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.217 0.783 30 H 0.127 0.873 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.518 1.149 7.734 12.318 hybrid contribution -0.690 -0.961 0.465 1.271 sum -10.208 0.189 8.199 13.094 Atomic orbital electron populations 1.22068 0.95524 1.00985 1.01362 1.21825 0.95743 0.97814 1.00289 1.18632 0.93902 0.89410 0.83100 0.96664 1.22447 0.92763 1.03706 1.46709 0.93098 1.27286 1.10847 0.92077 0.91444 1.70831 1.08846 1.33735 1.42330 0.82901 0.69347 0.76363 0.77244 1.19478 1.20531 1.20898 1.46186 1.12260 1.60012 1.16820 1.18357 0.86362 0.90738 0.93867 1.20930 0.95960 1.09237 0.98820 1.21056 0.95081 0.95482 0.97987 1.20750 1.00730 1.06452 0.93549 1.19778 0.92274 0.94973 0.96064 1.20162 0.99129 0.95462 0.92755 1.21809 1.01350 0.94027 1.02366 1.21787 0.96444 0.99892 1.01151 1.20591 0.99081 1.08779 0.97026 0.92708 0.93242 0.92406 0.92876 0.93473 0.92786 0.78337 0.87327 0.84968 0.84843 0.91166 0.91945 0.90687 0.94089 0.93466 0.90823 0.91951 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.23 71.98 0.59 -4.59 16 2 C -0.12 -4.97 5.58 30.60 0.17 -4.80 16 3 C 0.25 12.36 1.92 44.25 0.08 12.45 16 4 H 0.02 0.85 5.02 -2.39 -0.01 0.84 16 5 C -0.62 -33.34 8.50 25.60 0.22 -33.12 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 7 C -0.01 -0.81 5.45 84.65 0.46 -0.34 16 8 N -0.92 -55.31 13.62 21.45 0.29 -55.02 16 9 Si 1.12 49.02 29.91 68.60 2.05 51.07 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 13 N -0.73 -33.18 5.19 -322.51 -1.67 -34.85 16 14 C 0.21 8.96 5.52 38.21 0.21 9.17 16 15 C -0.23 -9.03 6.71 22.40 0.15 -8.88 16 16 C -0.08 -2.58 10.04 22.25 0.22 -2.35 16 17 C -0.19 -5.86 8.71 22.29 0.19 -5.66 16 18 C -0.03 -0.94 4.78 -19.88 -0.10 -1.04 16 19 C -0.06 -1.36 3.09 -11.54 -0.04 -1.39 16 20 C -0.14 -2.92 9.01 71.98 0.65 -2.27 16 21 C -0.14 -2.65 9.01 71.98 0.65 -2.00 16 22 C -0.23 -8.59 9.52 22.40 0.21 -8.38 16 23 H 0.05 2.08 5.36 -2.39 -0.01 2.06 16 24 H 0.05 1.78 6.41 -2.39 -0.02 1.77 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.26 16.11 6.66 -92.71 -0.62 15.49 16 29 H 0.38 17.35 8.61 -92.71 -0.80 16.55 16 30 H 0.11 4.61 3.99 -2.91 -0.01 4.60 16 31 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.13 3.24 7.09 -2.91 -0.02 3.22 16 33 H 0.07 1.70 7.87 -2.39 -0.02 1.68 16 34 H 0.06 1.24 7.38 -2.39 -0.02 1.22 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.15 7.39 -2.39 -0.02 1.13 16 40 H 0.11 3.91 7.94 -2.91 -0.02 3.88 16 Total: -1.00 -60.65 312.69 4.73 -55.92 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.37 Total: 36.10 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 3.69 Total: -53.23 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -1.38 Total: -89.87 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.05 Total: 51.07 kcal Total: -60.65 4.73 -55.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036680649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.589 kcal (2) G-P(sol) polarization free energy of solvation -60.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds