Wall clock time and date at job start Mon Mar 30 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53001 * 109.47259 * 2 1 4 4 H 1.09001 * 109.47414 * 54.99761 * 3 2 1 5 5 C 1.50705 * 109.47537 * 175.00358 * 3 2 1 6 6 H 1.08002 * 120.00074 * 119.99739 * 5 3 2 7 7 C 1.37879 * 119.99550 * 299.99895 * 5 3 2 8 8 N 1.31504 * 120.00229 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99492 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47156 * 60.00221 * 9 7 5 11 11 H 1.48502 * 109.46478 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47121 * 299.99604 * 9 7 5 13 13 N 1.46507 * 109.46888 * 295.00345 * 3 2 1 14 14 C 1.39673 * 120.00373 * 84.99614 * 13 3 2 15 15 C 1.38938 * 120.06794 * 7.20780 * 14 13 3 16 16 C 1.38080 * 119.91881 * 179.97438 * 15 14 13 17 17 C 1.38311 * 120.07618 * 0.02562 * 16 15 14 18 18 C 1.38268 * 120.14982 * 359.74469 * 17 16 15 19 19 C 1.38117 * 120.07207 * 0.50793 * 18 17 16 20 20 C 1.50700 * 120.03706 * 179.76668 * 19 18 17 21 21 C 1.53004 * 109.47387 * 305.39188 * 20 19 18 22 22 C 1.52999 * 109.46933 * 65.39063 * 20 19 18 23 23 H 1.09009 * 109.47127 * 299.99712 * 1 2 3 24 24 H 1.08998 * 109.47569 * 59.99951 * 1 2 3 25 25 H 1.09000 * 109.47115 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47242 * 240.00221 * 2 1 3 27 27 H 1.08998 * 109.47569 * 120.00049 * 2 1 3 28 28 H 0.97004 * 120.00266 * 180.02562 * 8 7 5 29 29 H 0.97001 * 119.99448 * 264.99695 * 13 3 2 30 30 H 1.07987 * 120.04087 * 359.97438 * 15 14 13 31 31 H 1.08006 * 119.96382 * 179.97438 * 16 15 14 32 32 H 1.08003 * 119.92190 * 179.97438 * 17 16 15 33 33 H 1.07996 * 119.95878 * 180.27452 * 18 17 16 34 34 H 1.09002 * 109.47389 * 185.38528 * 20 19 18 35 35 H 1.09004 * 109.46691 * 59.99569 * 21 20 19 36 36 H 1.08997 * 109.46741 * 299.99910 * 21 20 19 37 37 H 1.08997 * 109.47062 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47167 * 299.99898 * 22 20 19 39 39 H 1.09000 * 109.47110 * 59.99735 * 22 20 19 40 40 H 1.08998 * 109.47610 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8785 1.2279 8 7 3.4063 0.3367 2.1727 9 14 6.0050 0.8802 1.3809 10 1 6.5004 2.2801 1.3806 11 1 6.3978 0.2169 2.6502 12 1 6.5966 0.1453 0.2342 13 7 1.6522 2.0975 -1.2518 14 6 0.3907 2.6850 -1.3712 15 6 -0.4397 2.7821 -0.2616 16 6 -1.6861 3.3639 -0.3830 17 6 -2.1082 3.8492 -1.6074 18 6 -1.2823 3.7583 -2.7126 19 6 -0.0366 3.1728 -2.5994 20 6 0.8608 3.0695 -3.8056 21 6 0.1132 2.3634 -4.9386 22 6 1.2680 4.4726 -4.2600 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8294 -0.0611 2.9497 29 1 2.2718 2.1231 -1.9978 30 1 -0.1109 2.4031 0.6946 31 1 -2.3324 3.4395 0.4791 32 1 -3.0837 4.3034 -1.6996 33 1 -1.6133 4.1422 -3.6662 34 1 1.7525 2.4983 -3.5473 35 1 -0.7784 2.9348 -5.1968 36 1 -0.1768 1.3639 -4.6148 37 1 0.7625 2.2883 -5.8108 38 1 0.3764 5.0439 -4.5184 39 1 1.8006 4.9756 -3.4529 40 1 1.9167 4.3980 -5.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036987216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:58 Heat of formation + Delta-G solvation = 7.155673 kcal Electronic energy + Delta-G solvation = -18534.361118 eV Core-core repulsion = 15927.105975 eV Total energy + Delta-G solvation = -2607.255143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40512 -36.00847 -34.91733 -32.72781 -31.02936 -29.34983 -28.53881 -26.91171 -26.09500 -23.34050 -22.85435 -21.31080 -19.72193 -19.12602 -17.38586 -16.09280 -15.43608 -14.92313 -14.56428 -13.97796 -13.65122 -13.46060 -13.45290 -13.11196 -12.84176 -12.47672 -12.10493 -11.86423 -11.65003 -11.51025 -11.29720 -11.16324 -10.92874 -10.88023 -10.82334 -10.38031 -10.19823 -10.16787 -10.05429 -9.68474 -9.23785 -8.94377 -8.43472 -8.12064 -6.40063 -6.15898 -4.24102 2.03737 2.32624 3.23702 3.28806 3.30780 4.26061 4.50218 4.61756 5.08688 5.15478 5.16480 5.49099 5.57026 5.64180 5.72619 5.80684 5.90175 6.01292 6.10879 6.16889 6.25569 6.27010 6.34268 6.43501 6.48932 6.55533 6.56906 6.66182 6.94949 6.99991 7.09435 7.15318 7.24700 7.26339 7.46329 7.61009 7.71469 7.85930 8.10938 8.40963 8.74389 8.93504 9.42893 10.89272 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023706 B = 0.006914 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.869856 B = 4048.848532 C = 4649.070008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.273 3.727 4 H 0.040 0.960 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.725 5.725 14 C 0.243 3.757 15 C -0.196 4.196 16 C -0.080 4.080 17 C -0.205 4.205 18 C -0.070 4.070 19 C -0.178 4.178 20 C -0.046 4.046 21 C -0.139 4.139 22 C -0.140 4.140 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.028 0.972 26 H 0.032 0.968 27 H 0.098 0.902 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 4.226 -8.622 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.171 3.829 4 H 0.058 0.942 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.134 3.866 15 C -0.219 4.219 16 C -0.099 4.099 17 C -0.226 4.226 18 C -0.089 4.089 19 C -0.183 4.183 20 C -0.065 4.065 21 C -0.196 4.196 22 C -0.197 4.197 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.697 4.003 -8.222 11.335 hybrid contribution 1.179 -0.088 -0.048 1.183 sum -5.518 3.915 -8.270 10.685 Atomic orbital electron populations 1.22043 0.98903 0.99011 1.00627 1.22001 0.92251 1.00379 1.02394 1.18720 0.94309 0.88689 0.81221 0.94221 1.21196 0.90938 1.38662 1.06118 0.92295 1.24861 0.98557 0.94773 0.95403 1.69854 1.35218 1.37820 1.09414 0.86536 0.84987 0.78337 0.77441 1.20196 1.21107 1.20189 1.45641 1.12284 1.59090 1.17880 1.17812 0.86535 0.89876 0.92394 1.20886 0.95496 1.07074 0.98438 1.20771 0.95394 0.96860 0.96843 1.20603 1.00235 1.08132 0.93621 1.20498 0.93130 0.97663 0.97563 1.19172 0.96978 1.08943 0.93246 1.19830 0.97270 0.96405 0.92986 1.21824 0.99894 1.00527 0.97363 1.21832 1.00872 0.96429 1.00564 0.93611 0.93474 0.95330 0.94866 0.88364 0.92530 0.77671 0.85505 0.87321 0.87746 0.87509 0.91097 0.92843 0.92730 0.93170 0.92886 0.92661 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.32 37.15 0.31 -2.73 16 2 C -0.13 -3.06 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.56 2.20 -69.08 -0.15 6.41 16 4 H 0.04 1.05 6.21 -51.93 -0.32 0.73 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.89 -24.13 11.29 55.43 0.63 -23.51 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.73 -15.08 5.08 -53.28 -0.27 -15.35 16 14 C 0.24 4.68 5.18 -83.79 -0.43 4.24 16 15 C -0.20 -3.75 6.96 -39.38 -0.27 -4.02 16 16 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 17 C -0.21 -3.17 10.04 -39.54 -0.40 -3.57 16 18 C -0.07 -1.08 8.75 -39.61 -0.35 -1.42 16 19 C -0.18 -2.98 4.80 -104.43 -0.50 -3.48 16 20 C -0.05 -0.67 3.01 -91.77 -0.28 -0.95 16 21 C -0.14 -1.75 8.95 37.16 0.33 -1.42 16 22 C -0.14 -1.80 9.06 37.16 0.34 -1.46 16 23 H 0.04 0.92 6.73 -51.92 -0.35 0.57 16 24 H 0.05 0.95 5.59 -51.93 -0.29 0.66 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.39 7.71 6.24 -40.82 -0.25 7.45 16 30 H 0.13 2.61 4.69 -52.49 -0.25 2.36 16 31 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.10 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.11 1.41 7.10 -52.49 -0.37 1.04 16 34 H 0.07 1.10 5.74 -51.93 -0.30 0.80 16 35 H 0.05 0.62 7.11 -51.93 -0.37 0.25 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.63 7.73 -51.93 -0.40 0.23 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -26.37 308.11 -8.50 -34.87 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.14 Total: 9.64 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -2.34 Total: -25.85 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.36 Total: -38.85 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.37 -8.50 -34.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.029 kcal (2) G-P(sol) polarization free energy of solvation -26.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds