Wall clock time and date at job start Mon Mar 30 2020 06:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 H 1.08997 * 109.47117 * 304.99922 * 3 2 1 5 5 C 1.50700 * 109.47208 * 184.99954 * 3 2 1 6 6 H 1.07993 * 119.99924 * 240.00203 * 5 3 2 7 7 C 1.37871 * 120.00188 * 59.99416 * 5 3 2 8 8 N 1.31518 * 120.00007 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00337 * 179.97438 * 7 5 3 10 10 H 1.48512 * 109.46988 * 90.00459 * 9 7 5 11 11 H 1.48497 * 109.47428 * 210.00119 * 9 7 5 12 12 H 1.48499 * 109.47002 * 330.00876 * 9 7 5 13 13 N 1.46496 * 109.47237 * 64.99841 * 3 2 1 14 14 C 1.39680 * 119.99966 * 275.00017 * 13 3 2 15 15 C 1.38928 * 120.07467 * 352.75404 * 14 13 3 16 16 C 1.38079 * 119.92658 * 179.79102 * 15 14 13 17 17 C 1.38317 * 120.07290 * 0.48378 * 16 15 14 18 18 C 1.38263 * 120.14670 * 359.74348 * 17 16 15 19 19 C 1.38126 * 120.07603 * 0.02803 * 18 17 16 20 20 C 1.50703 * 120.03328 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.46965 * 294.62258 * 20 19 18 22 22 C 1.52998 * 109.47415 * 54.62748 * 20 19 18 23 23 H 1.08994 * 109.47349 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47448 * 300.00297 * 1 2 3 25 25 H 1.09004 * 109.46731 * 60.00168 * 1 2 3 26 26 H 1.09004 * 109.46731 * 119.99832 * 2 1 3 27 27 H 1.08993 * 109.46929 * 239.99702 * 2 1 3 28 28 H 0.97003 * 120.00594 * 179.97438 * 8 7 5 29 29 H 0.97004 * 120.00311 * 94.99733 * 13 3 2 30 30 H 1.08004 * 120.03658 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.96727 * 180.25557 * 16 15 14 32 32 H 1.07994 * 119.92350 * 179.76882 * 17 16 15 33 33 H 1.08000 * 119.96068 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.46499 * 174.62614 * 20 19 18 35 35 H 1.09003 * 109.47221 * 60.00799 * 21 20 19 36 36 H 1.09004 * 109.47333 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.47754 * 300.00207 * 21 20 19 38 38 H 1.08999 * 109.47204 * 59.99306 * 22 20 19 39 39 H 1.08998 * 109.47321 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.46778 * 300.00026 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0049 0.8812 -1.3817 10 1 6.5549 -0.3503 -0.7600 11 1 6.3830 0.9222 -2.8171 12 1 6.5569 2.0737 -0.6900 13 7 1.6525 2.0975 1.2517 14 6 0.3909 2.6851 1.3710 15 6 -0.4392 2.7830 0.2614 16 6 -1.6875 3.3605 0.3837 17 6 -2.1077 3.8502 1.6071 18 6 -1.2821 3.7586 2.7124 19 6 -0.0341 3.1778 2.5980 20 6 0.8651 3.0790 3.8033 21 6 1.2671 4.4840 4.2562 22 6 0.1219 2.3706 4.9375 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5138 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 3.8293 -0.0606 -2.9502 29 1 2.2719 2.1232 1.9978 30 1 -0.1101 2.4044 -0.6951 31 1 -2.3350 3.4332 -0.4776 32 1 -3.0830 4.3048 1.6992 33 1 -1.6131 4.1424 3.6661 34 1 1.7588 2.5112 3.5441 35 1 0.3735 5.0518 4.5154 36 1 1.9179 4.4125 5.1277 37 1 1.7967 4.9887 3.4481 38 1 -0.1646 1.3696 4.6148 39 1 0.7725 2.2987 5.8091 40 1 -0.7718 2.9383 5.1966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036987217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:01 Heat of formation + Delta-G solvation = 7.116429 kcal Electronic energy + Delta-G solvation = -18534.039052 eV Core-core repulsion = 15926.782208 eV Total energy + Delta-G solvation = -2607.256845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40500 -36.00938 -34.91791 -32.72756 -31.02935 -29.34992 -28.53889 -26.91196 -26.09663 -23.34208 -22.85563 -21.31143 -19.72174 -19.12713 -17.38736 -16.09445 -15.43868 -14.92235 -14.56240 -13.97703 -13.65160 -13.46097 -13.45328 -13.11328 -12.84195 -12.47952 -12.10512 -11.86632 -11.64908 -11.51314 -11.30065 -11.16152 -10.94969 -10.87608 -10.80495 -10.37296 -10.20170 -10.16742 -10.05591 -9.68424 -9.23894 -8.93897 -8.43768 -8.12066 -6.40115 -6.16119 -4.24247 2.03687 2.32615 3.22084 3.29318 3.31980 4.26055 4.50196 4.61631 5.08659 5.15329 5.16447 5.49116 5.56978 5.64168 5.72596 5.80704 5.90160 6.01254 6.10859 6.16865 6.25543 6.27017 6.34136 6.43466 6.48947 6.55452 6.56819 6.66139 6.94885 6.99887 7.09397 7.15264 7.24653 7.26283 7.46220 7.61116 7.71387 7.85914 8.10800 8.40919 8.74469 8.93514 9.42829 10.89072 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.006915 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.450345 B = 4047.978239 C = 4649.522741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.273 3.727 4 H 0.040 0.960 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.725 5.725 14 C 0.243 3.757 15 C -0.196 4.196 16 C -0.080 4.080 17 C -0.205 4.205 18 C -0.070 4.070 19 C -0.178 4.178 20 C -0.046 4.046 21 C -0.140 4.140 22 C -0.139 4.139 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.032 0.968 27 H 0.098 0.902 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 4.242 8.636 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.170 3.830 4 H 0.058 0.942 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.134 3.866 15 C -0.219 4.219 16 C -0.099 4.099 17 C -0.226 4.226 18 C -0.089 4.089 19 C -0.183 4.183 20 C -0.065 4.065 21 C -0.197 4.197 22 C -0.196 4.196 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.223 0.777 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.696 4.027 8.238 11.354 hybrid contribution 1.174 -0.106 0.042 1.179 sum -5.522 3.921 8.279 10.697 Atomic orbital electron populations 1.22044 0.98904 0.99011 1.00626 1.22004 0.92253 1.00378 1.02390 1.18722 0.94331 0.88692 0.81230 0.94209 1.21229 0.90939 1.38545 1.06105 0.92244 1.24865 0.98570 0.94802 0.95398 1.69870 1.35112 1.37917 1.09413 0.86477 0.84998 0.78479 0.77361 1.20559 1.21050 1.19884 1.45641 1.12291 1.59087 1.17876 1.17810 0.86549 0.89857 0.92397 1.20885 0.95454 1.07138 0.98419 1.20770 0.95375 0.96863 0.96856 1.20602 1.00282 1.08068 0.93636 1.20500 0.93106 0.97698 0.97549 1.19175 0.96924 1.08952 0.93296 1.19829 0.97278 0.96391 0.92987 1.21830 1.00873 0.96411 1.00576 1.21823 0.99912 1.00520 0.97358 0.95329 0.93484 0.93605 0.94869 0.88368 0.92595 0.77668 0.85506 0.87320 0.87745 0.87508 0.91101 0.92880 0.93160 0.92664 0.92731 0.93168 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.33 37.16 0.31 -2.73 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.55 2.20 -69.08 -0.15 6.39 16 4 H 0.04 1.05 6.21 -51.93 -0.32 0.73 16 5 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.13 11.29 55.43 0.63 -23.51 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.73 -15.07 5.08 -53.29 -0.27 -15.34 16 14 C 0.24 4.68 5.18 -83.79 -0.43 4.24 16 15 C -0.20 -3.75 6.96 -39.38 -0.27 -4.02 16 16 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 17 C -0.21 -3.17 10.04 -39.54 -0.40 -3.57 16 18 C -0.07 -1.08 8.75 -39.61 -0.35 -1.42 16 19 C -0.18 -2.98 4.80 -104.42 -0.50 -3.48 16 20 C -0.05 -0.67 3.02 -91.77 -0.28 -0.95 16 21 C -0.14 -1.80 9.06 37.15 0.34 -1.46 16 22 C -0.14 -1.75 8.95 37.16 0.33 -1.42 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.95 5.59 -51.93 -0.29 0.66 16 25 H 0.04 0.93 6.73 -51.93 -0.35 0.58 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.39 7.70 6.23 -40.82 -0.25 7.45 16 30 H 0.13 2.61 4.70 -52.48 -0.25 2.36 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.10 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.41 7.10 -52.49 -0.37 1.04 16 34 H 0.07 1.10 5.73 -51.93 -0.30 0.80 16 35 H 0.05 0.63 7.72 -51.93 -0.40 0.23 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.62 7.11 -51.93 -0.37 0.25 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -26.40 308.11 -8.50 -34.90 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.14 Total: 9.61 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -2.34 Total: -25.84 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.36 Total: -38.85 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.40 -8.50 -34.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.015 kcal (2) G-P(sol) polarization free energy of solvation -26.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds