Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 H 1.08997 * 109.47117 * 304.99922 * 3 2 1 5 5 C 1.50700 * 109.47208 * 184.99954 * 3 2 1 6 6 H 1.07993 * 119.99924 * 240.00203 * 5 3 2 7 7 C 1.37871 * 120.00188 * 59.99416 * 5 3 2 8 8 N 1.31518 * 120.00007 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00337 * 179.97438 * 7 5 3 10 10 H 1.48512 * 109.46988 * 90.00459 * 9 7 5 11 11 H 1.48497 * 109.47428 * 210.00119 * 9 7 5 12 12 H 1.48499 * 109.47002 * 330.00876 * 9 7 5 13 13 N 1.46496 * 109.47237 * 64.99841 * 3 2 1 14 14 C 1.39680 * 119.99966 * 275.00017 * 13 3 2 15 15 C 1.38928 * 120.07467 * 352.75404 * 14 13 3 16 16 C 1.38079 * 119.92658 * 179.79102 * 15 14 13 17 17 C 1.38317 * 120.07290 * 0.48378 * 16 15 14 18 18 C 1.38263 * 120.14670 * 359.74348 * 17 16 15 19 19 C 1.38126 * 120.07603 * 0.02803 * 18 17 16 20 20 C 1.50703 * 120.03328 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.46965 * 294.62258 * 20 19 18 22 22 C 1.52998 * 109.47415 * 54.62748 * 20 19 18 23 23 H 1.08994 * 109.47349 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47448 * 300.00297 * 1 2 3 25 25 H 1.09004 * 109.46731 * 60.00168 * 1 2 3 26 26 H 1.09004 * 109.46731 * 119.99832 * 2 1 3 27 27 H 1.08993 * 109.46929 * 239.99702 * 2 1 3 28 28 H 0.97003 * 120.00594 * 179.97438 * 8 7 5 29 29 H 0.97004 * 120.00311 * 94.99733 * 13 3 2 30 30 H 1.08004 * 120.03658 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.96727 * 180.25557 * 16 15 14 32 32 H 1.07994 * 119.92350 * 179.76882 * 17 16 15 33 33 H 1.08000 * 119.96068 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.46499 * 174.62614 * 20 19 18 35 35 H 1.09003 * 109.47221 * 60.00799 * 21 20 19 36 36 H 1.09004 * 109.47333 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.47754 * 300.00207 * 21 20 19 38 38 H 1.08999 * 109.47204 * 59.99306 * 22 20 19 39 39 H 1.08998 * 109.47321 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.46778 * 300.00026 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0049 0.8812 -1.3817 10 1 6.5549 -0.3503 -0.7600 11 1 6.3830 0.9222 -2.8171 12 1 6.5569 2.0737 -0.6900 13 7 1.6525 2.0975 1.2517 14 6 0.3909 2.6851 1.3710 15 6 -0.4392 2.7830 0.2614 16 6 -1.6875 3.3605 0.3837 17 6 -2.1077 3.8502 1.6071 18 6 -1.2821 3.7586 2.7124 19 6 -0.0341 3.1778 2.5980 20 6 0.8651 3.0790 3.8033 21 6 1.2671 4.4840 4.2562 22 6 0.1219 2.3706 4.9375 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5138 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 3.8293 -0.0606 -2.9502 29 1 2.2719 2.1232 1.9978 30 1 -0.1101 2.4044 -0.6951 31 1 -2.3350 3.4332 -0.4776 32 1 -3.0830 4.3048 1.6992 33 1 -1.6131 4.1424 3.6661 34 1 1.7588 2.5112 3.5441 35 1 0.3735 5.0518 4.5154 36 1 1.9179 4.4125 5.1277 37 1 1.7967 4.9887 3.4481 38 1 -0.1646 1.3696 4.6148 39 1 0.7725 2.2987 5.8091 40 1 -0.7718 2.9383 5.1966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036987217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = -5.355088 kcal Electronic energy + Delta-G solvation = -18534.579858 eV Core-core repulsion = 15926.782208 eV Total energy + Delta-G solvation = -2607.797650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78038 -37.66274 -36.11032 -34.57168 -32.77023 -30.70553 -30.07229 -27.90684 -27.85865 -24.98975 -24.34014 -22.79653 -21.20181 -20.58603 -19.05745 -17.73036 -17.16543 -16.37208 -16.08187 -15.58654 -15.07319 -14.84812 -14.72119 -14.46179 -14.20295 -14.08390 -13.59218 -13.17236 -13.16263 -12.94399 -12.83257 -12.73282 -12.67148 -12.34997 -12.03050 -11.98033 -11.94628 -11.61581 -11.37995 -11.31380 -10.97591 -10.75255 -10.36084 -9.42699 -8.19257 -7.90345 -6.33220 0.71489 0.97925 1.39973 1.40913 1.50800 2.36431 3.01293 3.10862 3.17851 3.93111 4.03296 4.30230 4.42214 4.43194 4.51166 4.56700 4.60343 4.73028 4.75982 4.83681 4.87629 5.03663 5.04173 5.06430 5.12311 5.20634 5.27084 5.38311 5.40168 5.42342 5.47565 5.57914 5.67875 5.73058 5.86840 5.88993 5.93522 6.16761 6.32193 6.59571 6.91964 7.27189 7.39961 8.86383 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.006915 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.450345 B = 4047.978239 C = 4649.522741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.285 3.715 4 H 0.008 0.992 5 C -0.549 4.549 6 H 0.057 0.943 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.271 1.271 13 N -0.732 5.732 14 C 0.214 3.786 15 C -0.217 4.217 16 C -0.086 4.086 17 C -0.194 4.194 18 C -0.070 4.070 19 C -0.174 4.174 20 C -0.050 4.050 21 C -0.134 4.134 22 C -0.133 4.133 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.265 0.735 29 H 0.390 0.610 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.066 0.934 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 5.238 10.612 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.181 3.819 4 H 0.026 0.974 5 C -0.587 4.587 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.195 1.195 13 N -0.359 5.359 14 C 0.107 3.893 15 C -0.240 4.240 16 C -0.105 4.105 17 C -0.215 4.215 18 C -0.089 4.089 19 C -0.179 4.179 20 C -0.068 4.068 21 C -0.191 4.191 22 C -0.190 4.190 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.226 0.774 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.760 5.043 10.233 13.797 hybrid contribution 1.388 -0.343 -0.538 1.527 sum -6.372 4.700 9.695 12.517 Atomic orbital electron populations 1.21868 0.96670 0.99915 1.00560 1.21831 0.94204 0.99665 1.00554 1.18314 0.93071 0.88777 0.81772 0.97449 1.21572 0.92324 1.38566 1.06241 0.92515 1.25637 1.02794 0.94464 0.95100 1.69998 1.36716 1.38450 1.09784 0.85499 0.79894 0.78580 0.77301 1.19916 1.20747 1.19532 1.45305 1.13403 1.60422 1.16731 1.18056 0.86089 0.91376 0.93729 1.20835 0.96942 1.08713 0.97463 1.21030 0.94573 0.96425 0.98485 1.21024 1.01400 1.06275 0.92756 1.20886 0.92223 0.96761 0.99008 1.19501 0.97816 1.07647 0.92972 1.19899 0.96506 0.97542 0.92897 1.21785 1.01686 0.95101 1.00576 1.21778 1.00626 0.99664 0.96974 0.93758 0.93136 0.94045 0.95481 0.91122 0.92570 0.77445 0.88208 0.85431 0.84483 0.84334 0.92834 0.91394 0.91407 0.94404 0.94041 0.91495 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.33 71.98 0.60 -4.96 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.82 16 3 C 0.28 14.33 2.20 44.25 0.10 14.42 16 4 H 0.01 0.44 6.21 -2.39 -0.01 0.42 16 5 C -0.55 -29.73 8.73 25.60 0.22 -29.51 16 6 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 7 C 0.02 1.10 5.29 84.65 0.45 1.54 16 8 N -0.91 -51.30 11.29 21.45 0.24 -51.06 16 9 Si 0.96 42.83 29.54 68.60 2.03 44.85 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 13 N -0.73 -31.57 5.08 -322.52 -1.64 -33.21 16 14 C 0.21 8.32 5.18 38.21 0.20 8.52 16 15 C -0.22 -8.43 6.96 22.40 0.16 -8.27 16 16 C -0.09 -2.76 10.04 22.25 0.22 -2.54 16 17 C -0.19 -5.35 10.04 22.29 0.22 -5.13 16 18 C -0.07 -1.93 8.75 22.25 0.19 -1.74 16 19 C -0.17 -5.58 4.80 -19.73 -0.09 -5.68 16 20 C -0.05 -1.36 3.02 -11.54 -0.03 -1.39 16 21 C -0.13 -3.13 9.06 71.98 0.65 -2.48 16 22 C -0.13 -2.99 8.95 71.98 0.64 -2.35 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 2.06 5.59 -2.39 -0.01 2.05 16 25 H 0.04 1.73 6.73 -2.38 -0.02 1.72 16 26 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.07 3.82 5.95 -2.39 -0.01 3.81 16 28 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.39 16.07 6.23 -92.70 -0.58 15.49 16 30 H 0.10 4.37 4.70 -2.91 -0.01 4.36 16 31 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.14 2.94 7.10 -2.91 -0.02 2.92 16 34 H 0.05 1.65 5.73 -2.39 -0.01 1.63 16 35 H 0.07 1.37 7.72 -2.39 -0.02 1.36 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.33 7.11 -2.39 -0.02 1.31 16 Total: -1.00 -58.11 308.11 4.77 -53.34 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.44 Total: 31.44 kcal Atomic # 6 Polarization: -49.06 SS G_CDS: 3.70 Total: -45.36 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.40 Total: -84.27 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -58.11 4.77 -53.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.984 kcal (2) G-P(sol) polarization free energy of solvation -58.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds