Wall clock time and date at job start Mon Mar 30 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47341 * 2 1 4 4 C 1.53001 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47245 * 304.99833 * 4 3 2 6 6 C 1.53003 * 109.47127 * 65.00379 * 4 3 2 7 7 C 1.53003 * 109.47181 * 184.99898 * 4 3 2 8 8 N 1.46497 * 109.47142 * 174.99686 * 7 4 3 9 9 C 1.38859 * 120.00042 * 179.97438 * 8 7 4 10 10 C 1.39564 * 119.84105 * 359.73889 * 9 8 7 11 11 C 1.36340 * 120.16235 * 179.71044 * 10 9 8 12 12 C 1.40887 * 119.83222 * 0.55628 * 11 10 9 13 13 C 1.41146 * 120.15270 * 179.69667 * 12 11 10 14 14 H 1.07997 * 119.99632 * 204.62074 * 13 12 11 15 15 C 1.39857 * 119.99935 * 24.62309 * 13 12 11 16 16 N 1.30907 * 120.00465 * 17.96343 * 15 13 12 17 17 Si 1.86806 * 119.99907 * 197.96492 * 15 13 12 18 18 H 1.48504 * 109.46913 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47128 * 119.99870 * 17 15 13 20 20 H 1.48498 * 109.47257 * 240.00155 * 17 15 13 21 21 C 1.40885 * 119.69113 * 359.71813 * 12 11 10 22 22 C 1.36339 * 119.83596 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.47094 * 300.00291 * 1 2 3 24 24 H 1.09000 * 109.47128 * 59.99951 * 1 2 3 25 25 H 1.08999 * 109.47465 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47119 * 239.99705 * 2 1 3 27 27 H 1.09000 * 109.47128 * 120.00049 * 2 1 3 28 28 H 1.09005 * 109.47065 * 60.00329 * 3 2 1 29 29 H 1.09001 * 109.47504 * 299.99827 * 3 2 1 30 30 H 1.08997 * 109.47295 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.46337 * 299.99810 * 6 4 3 32 32 H 1.08995 * 109.47003 * 59.99656 * 6 4 3 33 33 H 1.09009 * 109.46905 * 55.00540 * 7 4 3 34 34 H 1.09001 * 109.47070 * 295.00512 * 7 4 3 35 35 H 0.96998 * 120.00253 * 0.02562 * 8 7 4 36 36 H 1.08003 * 119.92032 * 359.97184 * 10 9 8 37 37 H 1.07997 * 120.08650 * 180.26931 * 11 10 9 38 38 H 0.96995 * 119.99993 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.08155 * 179.97438 * 21 12 11 40 40 H 1.07993 * 119.91999 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8326 -1.3065 7 6 4.0801 2.8794 0.1263 8 7 5.5400 2.8706 0.2471 9 6 6.2334 4.0670 0.3735 10 6 5.5367 5.2763 0.3797 11 6 6.2104 6.4545 0.5094 12 6 7.6145 6.4498 0.6256 13 6 8.3193 7.6660 0.7538 14 1 9.3544 7.7246 0.4514 15 6 7.6772 8.7950 1.2724 16 7 6.5684 8.6616 1.9554 17 14 8.4018 10.4936 0.9905 18 1 9.6492 10.3735 0.1937 19 1 7.4233 11.3330 0.2537 20 1 8.7087 11.1243 2.2994 21 6 8.3117 5.2256 0.6128 22 6 7.6243 4.0548 0.4888 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9564 -0.8900 30 1 5.1705 0.8322 -1.3058 31 1 3.7172 -0.1911 -1.3959 32 1 3.7176 1.4220 -2.1484 33 1 3.6451 3.3432 1.0118 34 1 3.7920 3.4460 -0.7592 35 1 6.0224 2.0292 0.2380 36 1 4.4607 5.2785 0.2857 37 1 5.6696 7.3892 0.5184 38 1 6.1230 9.4447 2.3148 39 1 9.3880 5.2148 0.7011 40 1 8.1574 3.1157 0.4784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:18 Heat of formation + Delta-G solvation = -8.955788 kcal Electronic energy + Delta-G solvation = -17249.445057 eV Core-core repulsion = 14641.491269 eV Total energy + Delta-G solvation = -2607.953788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.27277 -37.09333 -34.68882 -33.12862 -31.55886 -29.41934 -28.54855 -26.83713 -25.79297 -23.83842 -21.86251 -21.03288 -20.04334 -19.62517 -17.16601 -16.14425 -15.66131 -15.04393 -14.87741 -14.41702 -14.01439 -13.76073 -13.38348 -12.89473 -12.59084 -12.56281 -12.38004 -11.99775 -11.94211 -11.69435 -11.46867 -11.33512 -11.06163 -10.99312 -10.83373 -10.62516 -10.58673 -10.40534 -10.32363 -9.65035 -9.24597 -9.17445 -8.47198 -7.45009 -6.60441 -6.33316 -3.99143 2.93639 3.14029 3.17657 3.23092 3.38865 4.08444 4.30886 4.77145 4.78598 4.80855 4.92856 5.07273 5.20620 5.34505 5.56486 5.60166 5.68622 5.77867 5.83529 5.86175 5.93030 6.02162 6.04171 6.13162 6.15499 6.31888 6.33036 6.38955 6.44068 6.98264 6.99234 7.24508 7.40004 7.60465 7.73485 7.89150 8.19585 8.34143 8.54809 8.76250 8.85355 9.10116 9.19769 10.41187 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042713 B = 0.003823 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.373687 B = 7323.241035 C = 7814.151138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.102 4.102 5 H 0.071 0.929 6 C -0.145 4.145 7 C 0.143 3.857 8 N -0.761 5.761 9 C 0.094 3.906 10 C -0.165 4.165 11 C -0.124 4.124 12 C 0.073 3.927 13 C -0.467 4.467 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.808 5.808 17 Si 0.902 3.098 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.277 1.277 21 C -0.186 4.186 22 C -0.161 4.161 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.383 0.617 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.091 0.909 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.719 -12.149 -3.483 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.121 4.121 5 H 0.089 0.911 6 C -0.202 4.202 7 C 0.018 3.982 8 N -0.397 5.397 9 C -0.003 4.003 10 C -0.187 4.187 11 C -0.144 4.144 12 C 0.070 3.930 13 C -0.498 4.498 14 H 0.090 0.910 15 C -0.141 4.141 16 N -0.436 5.436 17 Si 0.727 3.273 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.207 4.207 22 C -0.183 4.183 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.215 0.785 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.062 -11.906 -3.359 15.335 hybrid contribution 0.430 0.542 0.029 0.692 sum -8.632 -11.364 -3.330 14.655 Atomic orbital electron populations 1.21782 0.96105 1.01320 1.01827 1.21569 0.95576 0.97101 1.01983 1.21593 0.94481 0.96701 1.02327 1.21351 0.95386 0.96732 0.98598 0.91060 1.21852 1.01239 1.00082 0.97060 1.21041 0.82519 0.94784 0.99883 1.43886 1.03975 1.05429 1.86417 1.17369 0.90679 0.85423 1.06871 1.20098 0.97222 0.92074 1.09268 1.20934 0.94871 0.96270 1.02314 1.17498 0.91960 0.92023 0.91527 1.19388 0.98520 0.93928 1.37971 0.90954 1.25791 0.94559 1.00901 0.92827 1.69869 1.16633 1.31471 1.25617 0.86377 0.80050 0.82128 0.78757 1.18659 1.19998 1.20309 1.20543 0.97701 0.92214 1.10218 1.19800 0.91826 0.96913 1.09752 0.92777 0.92796 0.93023 0.91860 0.92185 0.91788 0.91802 0.92521 0.92899 0.92698 0.93678 0.93659 0.78475 0.89459 0.86422 0.91437 0.89099 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.08 5.69 -26.73 -0.15 -1.23 16 3 C -0.11 -1.13 4.68 -26.73 -0.13 -1.26 16 4 C -0.10 -1.17 2.42 -90.62 -0.22 -1.39 16 5 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 6 C -0.15 -1.57 8.82 37.16 0.33 -1.24 16 7 C 0.14 2.18 4.28 -4.04 -0.02 2.16 16 8 N -0.76 -13.56 5.43 -58.50 -0.32 -13.87 16 9 C 0.09 2.10 6.67 -83.69 -0.56 1.54 16 10 C -0.16 -3.97 9.23 -39.77 -0.37 -4.34 16 11 C -0.12 -3.33 8.64 -39.26 -0.34 -3.66 16 12 C 0.07 2.01 5.57 -106.79 -0.60 1.42 16 13 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 14 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 15 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 16 N -0.81 -21.82 10.96 55.54 0.61 -21.21 16 17 Si 0.90 19.51 29.60 -169.99 -5.03 14.48 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 21 C -0.19 -4.73 9.74 -39.26 -0.38 -5.11 16 22 C -0.16 -3.70 9.82 -39.77 -0.39 -4.09 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.65 7.18 -51.93 -0.37 0.28 16 31 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.73 7.94 -51.92 -0.41 0.32 16 34 H 0.05 0.72 7.91 -51.93 -0.41 0.31 16 35 H 0.38 6.09 7.65 -40.82 -0.31 5.78 16 36 H 0.09 1.93 6.68 -52.48 -0.35 1.58 16 37 H 0.12 3.27 6.16 -52.49 -0.32 2.94 16 38 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -28.33 321.06 -9.42 -37.76 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.64 Total: 7.44 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -2.88 Total: -29.43 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.29 Total: -35.08 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.33 -9.42 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.800 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds