Wall clock time and date at job start Mon Mar 30 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47341 * 2 1 4 4 C 1.53001 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47245 * 304.99833 * 4 3 2 6 6 C 1.53003 * 109.47127 * 65.00379 * 4 3 2 7 7 C 1.53003 * 109.47181 * 184.99898 * 4 3 2 8 8 N 1.46497 * 109.47142 * 174.99686 * 7 4 3 9 9 C 1.38859 * 120.00042 * 179.97438 * 8 7 4 10 10 C 1.39564 * 119.84105 * 359.73889 * 9 8 7 11 11 C 1.36340 * 120.16235 * 179.71044 * 10 9 8 12 12 C 1.40887 * 119.83222 * 0.55628 * 11 10 9 13 13 C 1.41146 * 120.15270 * 179.69667 * 12 11 10 14 14 H 1.07997 * 119.99632 * 204.62074 * 13 12 11 15 15 C 1.39857 * 119.99935 * 24.62309 * 13 12 11 16 16 N 1.30907 * 120.00465 * 17.96343 * 15 13 12 17 17 Si 1.86806 * 119.99907 * 197.96492 * 15 13 12 18 18 H 1.48504 * 109.46913 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47128 * 119.99870 * 17 15 13 20 20 H 1.48498 * 109.47257 * 240.00155 * 17 15 13 21 21 C 1.40885 * 119.69113 * 359.71813 * 12 11 10 22 22 C 1.36339 * 119.83596 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.47094 * 300.00291 * 1 2 3 24 24 H 1.09000 * 109.47128 * 59.99951 * 1 2 3 25 25 H 1.08999 * 109.47465 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47119 * 239.99705 * 2 1 3 27 27 H 1.09000 * 109.47128 * 120.00049 * 2 1 3 28 28 H 1.09005 * 109.47065 * 60.00329 * 3 2 1 29 29 H 1.09001 * 109.47504 * 299.99827 * 3 2 1 30 30 H 1.08997 * 109.47295 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.46337 * 299.99810 * 6 4 3 32 32 H 1.08995 * 109.47003 * 59.99656 * 6 4 3 33 33 H 1.09009 * 109.46905 * 55.00540 * 7 4 3 34 34 H 1.09001 * 109.47070 * 295.00512 * 7 4 3 35 35 H 0.96998 * 120.00253 * 0.02562 * 8 7 4 36 36 H 1.08003 * 119.92032 * 359.97184 * 10 9 8 37 37 H 1.07997 * 120.08650 * 180.26931 * 11 10 9 38 38 H 0.96995 * 119.99993 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.08155 * 179.97438 * 21 12 11 40 40 H 1.07993 * 119.91999 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8326 -1.3065 7 6 4.0801 2.8794 0.1263 8 7 5.5400 2.8706 0.2471 9 6 6.2334 4.0670 0.3735 10 6 5.5367 5.2763 0.3797 11 6 6.2104 6.4545 0.5094 12 6 7.6145 6.4498 0.6256 13 6 8.3193 7.6660 0.7538 14 1 9.3544 7.7246 0.4514 15 6 7.6772 8.7950 1.2724 16 7 6.5684 8.6616 1.9554 17 14 8.4018 10.4936 0.9905 18 1 9.6492 10.3735 0.1937 19 1 7.4233 11.3330 0.2537 20 1 8.7087 11.1243 2.2994 21 6 8.3117 5.2256 0.6128 22 6 7.6243 4.0548 0.4888 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9564 -0.8900 30 1 5.1705 0.8322 -1.3058 31 1 3.7172 -0.1911 -1.3959 32 1 3.7176 1.4220 -2.1484 33 1 3.6451 3.3432 1.0118 34 1 3.7920 3.4460 -0.7592 35 1 6.0224 2.0292 0.2380 36 1 4.4607 5.2785 0.2857 37 1 5.6696 7.3892 0.5184 38 1 6.1230 9.4447 2.3148 39 1 9.3880 5.2148 0.7011 40 1 8.1574 3.1157 0.4784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:18 Heat of formation + Delta-G solvation = -22.801900 kcal Electronic energy + Delta-G solvation = -17250.045470 eV Core-core repulsion = 14641.491269 eV Total energy + Delta-G solvation = -2608.554201 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.90375 -38.36901 -36.20707 -34.72681 -32.76678 -31.35390 -30.29744 -27.73776 -27.17812 -25.50880 -23.22202 -22.49262 -21.54837 -20.85523 -19.15121 -17.81181 -16.84844 -16.58187 -16.28379 -15.64456 -15.46708 -14.95025 -14.66574 -14.32959 -14.12576 -13.96640 -13.77021 -13.49337 -13.24215 -13.03103 -12.74766 -12.68903 -12.57355 -12.29630 -12.26537 -11.91206 -11.60723 -11.54031 -11.41876 -11.23139 -11.16081 -11.04472 -10.27921 -9.40815 -8.54750 -8.15331 -6.00263 1.10283 1.18262 1.40221 1.54682 1.58315 2.27761 2.84374 2.92641 3.83070 3.84964 3.95745 4.05436 4.29928 4.42701 4.43800 4.50993 4.53617 4.72166 4.79159 4.80917 4.95584 4.98826 5.03102 5.06963 5.13441 5.15638 5.21586 5.28154 5.30967 5.38178 5.46340 5.53605 5.54297 5.69495 5.80867 5.96887 6.19277 6.39426 6.67718 6.87898 7.08759 7.16047 7.33690 8.48886 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042713 B = 0.003823 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.373687 B = 7323.241035 C = 7814.151138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.091 4.091 5 H 0.076 0.924 6 C -0.143 4.143 7 C 0.140 3.860 8 N -0.749 5.749 9 C 0.111 3.889 10 C -0.177 4.177 11 C -0.144 4.144 12 C 0.034 3.966 13 C -0.505 4.505 14 H 0.068 0.932 15 C 0.030 3.970 16 N -0.842 5.842 17 Si 0.977 3.023 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.268 1.268 21 C -0.196 4.196 22 C -0.166 4.166 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.396 0.604 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.098 0.902 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.203 -13.673 -3.883 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.110 4.110 5 H 0.095 0.905 6 C -0.200 4.200 7 C 0.015 3.985 8 N -0.385 5.385 9 C 0.011 3.989 10 C -0.199 4.199 11 C -0.164 4.164 12 C 0.031 3.969 13 C -0.536 4.536 14 H 0.086 0.914 15 C -0.181 4.181 16 N -0.471 5.471 17 Si 0.799 3.201 18 H -0.184 1.184 19 H -0.192 1.192 20 H -0.193 1.193 21 C -0.216 4.216 22 C -0.188 4.188 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.231 0.769 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.563 -13.484 -3.763 16.954 hybrid contribution 0.505 0.831 0.145 0.983 sum -9.059 -12.652 -3.618 15.976 Atomic orbital electron populations 1.21783 0.95537 1.01969 1.01787 1.21541 0.96074 0.95863 1.02404 1.21577 0.93262 0.97902 1.02153 1.21270 0.96318 0.94035 0.99346 0.90549 1.21839 1.00788 1.01150 0.96227 1.21202 0.80785 0.97461 0.99078 1.43936 1.05133 1.04447 1.84969 1.17490 0.90872 0.86471 1.04034 1.20243 0.98052 0.92057 1.09523 1.20859 0.94921 0.96558 1.04037 1.17828 0.92629 0.93122 0.93313 1.19610 0.98762 0.95350 1.39917 0.91404 1.26631 0.94932 1.04634 0.91933 1.69931 1.17943 1.32881 1.26313 0.85238 0.79214 0.76754 0.78897 1.18419 1.19152 1.19321 1.20771 0.98297 0.92500 1.09996 1.20105 0.92261 0.97493 1.08957 0.92988 0.92728 0.92057 0.91213 0.91949 0.92232 0.91825 0.93156 0.90880 0.93122 0.94656 0.94266 0.76914 0.88028 0.88364 0.90792 0.88421 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.77 5.69 30.59 0.17 -1.60 16 3 C -0.11 -1.99 4.68 30.59 0.14 -1.85 16 4 C -0.09 -1.88 2.42 -10.79 -0.03 -1.90 16 5 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 6 C -0.14 -2.69 8.82 71.98 0.63 -2.05 16 7 C 0.14 4.02 4.28 86.38 0.37 4.39 16 8 N -0.75 -25.11 5.43 -338.98 -1.84 -26.95 16 9 C 0.11 4.84 6.67 38.67 0.26 5.10 16 10 C -0.18 -8.56 9.23 22.15 0.20 -8.36 16 11 C -0.14 -7.97 8.64 22.48 0.19 -7.77 16 12 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 13 C -0.51 -28.91 9.03 23.38 0.21 -28.70 16 14 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 15 C 0.03 1.63 5.13 85.22 0.44 2.06 16 16 N -0.84 -46.82 10.96 21.81 0.24 -46.58 16 17 Si 0.98 40.73 29.60 68.60 2.03 42.76 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 21 C -0.20 -9.99 9.74 22.48 0.22 -9.77 16 22 C -0.17 -7.42 9.82 22.15 0.22 -7.21 16 23 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.94 6.57 -2.39 -0.02 0.92 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.01 7.18 -2.39 -0.02 0.99 16 31 H 0.07 1.10 6.57 -2.39 -0.02 1.08 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 1.11 7.94 -2.38 -0.02 1.09 16 34 H 0.04 1.20 7.91 -2.39 -0.02 1.18 16 35 H 0.40 11.42 7.65 -92.71 -0.71 10.71 16 36 H 0.10 4.51 6.68 -2.91 -0.02 4.49 16 37 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 38 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 39 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -61.99 321.06 4.35 -57.64 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.29 Total: 30.31 kcal Atomic # 6 Polarization: -60.82 SS G_CDS: 3.63 Total: -57.19 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.60 Total: -73.53 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -61.99 4.35 -57.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.834 kcal (2) G-P(sol) polarization free energy of solvation -61.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds