Wall clock time and date at job start Mon Mar 30 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47271 * 2 1 4 4 C 1.52995 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47186 * 54.99738 * 4 3 2 6 6 C 1.53002 * 109.47300 * 295.00354 * 4 3 2 7 7 C 1.53001 * 109.47361 * 175.00199 * 4 3 2 8 8 N 1.46495 * 109.47298 * 184.99966 * 7 4 3 9 9 C 1.38856 * 120.00135 * 179.97438 * 8 7 4 10 10 C 1.39565 * 119.84105 * 359.72420 * 9 8 7 11 11 C 1.36347 * 120.15914 * 179.71497 * 10 9 8 12 12 C 1.40880 * 119.83670 * 0.56180 * 11 10 9 13 13 C 1.41129 * 120.15636 * 179.69756 * 12 11 10 14 14 H 1.08002 * 120.00079 * 204.62239 * 13 12 11 15 15 C 1.39864 * 120.00285 * 24.62318 * 13 12 11 16 16 N 1.30903 * 119.99640 * 17.96150 * 15 13 12 17 17 Si 1.86801 * 120.00372 * 197.96833 * 15 13 12 18 18 H 1.48502 * 109.47048 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47322 * 119.99514 * 17 15 13 20 20 H 1.48494 * 109.46942 * 239.99756 * 17 15 13 21 21 C 1.40893 * 119.68694 * 359.71308 * 12 11 10 22 22 C 1.36336 * 119.83655 * 0.02562 * 21 12 11 23 23 H 1.09004 * 109.47076 * 59.99512 * 1 2 3 24 24 H 1.08998 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47216 * 299.99973 * 1 2 3 26 26 H 1.08995 * 109.46989 * 240.00170 * 2 1 3 27 27 H 1.09003 * 109.47110 * 119.99941 * 2 1 3 28 28 H 1.09008 * 109.46979 * 59.99881 * 3 2 1 29 29 H 1.09003 * 109.47005 * 300.00005 * 3 2 1 30 30 H 1.09000 * 109.47633 * 180.02562 * 6 4 3 31 31 H 1.09006 * 109.46986 * 299.99677 * 6 4 3 32 32 H 1.09000 * 109.47201 * 59.99295 * 6 4 3 33 33 H 1.09006 * 109.46763 * 304.99778 * 7 4 3 34 34 H 1.08998 * 109.47175 * 64.99975 * 7 4 3 35 35 H 0.97005 * 119.99930 * 0.02562 * 8 7 4 36 36 H 1.07996 * 119.92089 * 359.97438 * 10 9 8 37 37 H 1.08003 * 120.07737 * 180.27762 * 11 10 9 38 38 H 0.97008 * 119.99992 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.07875 * 179.97438 * 21 12 11 40 40 H 1.08007 * 119.91783 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0794 0.8330 1.3083 7 6 4.0801 2.8795 -0.1250 8 7 5.5401 2.8707 -0.2445 9 6 6.2335 4.0670 -0.3717 10 6 5.5357 5.2755 -0.3912 11 6 6.2105 6.4543 -0.5100 12 6 7.6146 6.4497 -0.6252 13 6 8.3193 7.6655 -0.7549 14 1 9.2905 7.6790 -1.2272 15 6 7.7601 8.8530 -0.2719 16 7 6.7792 8.8097 0.5939 17 14 8.4127 10.5007 -0.8623 18 1 9.5149 10.2778 -1.8322 19 1 7.3190 11.2591 -1.5210 20 1 8.9234 11.2751 0.2973 21 6 8.3119 5.2255 -0.6105 22 6 7.6244 4.0547 -0.4857 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 5.1694 0.8334 1.3090 31 1 3.7158 1.4226 2.1499 32 1 3.7160 -0.1907 1.3978 33 1 3.6458 3.3430 -1.0109 34 1 3.7914 3.4462 0.7601 35 1 6.0224 2.0291 -0.2354 36 1 4.4590 5.2772 -0.3078 37 1 5.6695 7.3890 -0.5205 38 1 6.3911 9.6333 0.9287 39 1 9.3882 5.2145 -0.6988 40 1 8.1576 3.1155 -0.4747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:21 Heat of formation + Delta-G solvation = -22.813361 kcal Electronic energy + Delta-G solvation = -17252.430702 eV Core-core repulsion = 14643.876004 eV Total energy + Delta-G solvation = -2608.554698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.90363 -38.36927 -36.20728 -34.72660 -32.76677 -31.35301 -30.29811 -27.74228 -27.17737 -25.50816 -23.22144 -22.49170 -21.54778 -20.85591 -19.15114 -17.81126 -16.84487 -16.58777 -16.28298 -15.64844 -15.45743 -14.94963 -14.66052 -14.32870 -14.16073 -13.94460 -13.77387 -13.49336 -13.20872 -13.05510 -12.77145 -12.71311 -12.52750 -12.33494 -12.23525 -11.90575 -11.60548 -11.55580 -11.40513 -11.23303 -11.16112 -11.05004 -10.27725 -9.40778 -8.54785 -8.15351 -6.00240 1.10284 1.18289 1.40218 1.54721 1.58300 2.27767 2.84323 2.92725 3.82933 3.85163 3.95643 4.05237 4.29999 4.42693 4.43871 4.50979 4.53557 4.72218 4.79141 4.80857 4.95483 4.98507 5.02842 5.07075 5.13291 5.15647 5.21391 5.28176 5.30944 5.38154 5.46340 5.53719 5.54065 5.69489 5.80891 5.96887 6.19261 6.39432 6.67741 6.87939 7.08733 7.16090 7.33725 8.48822 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042979 B = 0.003811 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.323087 B = 7344.505339 C = 7784.416979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.090 4.090 5 H 0.078 0.922 6 C -0.144 4.144 7 C 0.140 3.860 8 N -0.749 5.749 9 C 0.111 3.889 10 C -0.177 4.177 11 C -0.144 4.144 12 C 0.034 3.966 13 C -0.505 4.505 14 H 0.068 0.932 15 C 0.030 3.970 16 N -0.842 5.842 17 Si 0.977 3.023 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.268 1.268 21 C -0.196 4.196 22 C -0.166 4.166 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.396 0.604 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.098 0.902 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 -13.917 -0.285 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.109 4.109 5 H 0.097 0.903 6 C -0.201 4.201 7 C 0.015 3.985 8 N -0.385 5.385 9 C 0.011 3.989 10 C -0.199 4.199 11 C -0.164 4.164 12 C 0.031 3.969 13 C -0.536 4.536 14 H 0.086 0.914 15 C -0.181 4.181 16 N -0.471 5.471 17 Si 0.799 3.201 18 H -0.184 1.184 19 H -0.191 1.191 20 H -0.193 1.193 21 C -0.216 4.216 22 C -0.188 4.188 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.231 0.769 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.886 -13.711 -0.126 16.903 hybrid contribution 0.513 0.837 -0.053 0.983 sum -9.373 -12.873 -0.179 15.925 Atomic orbital electron populations 1.21784 0.95541 1.01967 1.01786 1.21543 0.96070 0.95859 1.02411 1.21577 0.93246 0.97908 1.02159 1.21267 0.96324 0.94036 0.99285 0.90327 1.21848 1.00772 1.01165 0.96310 1.21201 0.80795 0.97448 0.99089 1.43936 1.05127 1.04444 1.84977 1.17489 0.90932 0.86452 1.03995 1.20244 0.98054 0.92012 1.09567 1.20860 0.94506 0.96422 1.04594 1.17824 0.92412 0.93173 0.93480 1.19609 1.04616 0.92797 1.36618 0.91406 1.26633 0.94541 1.04415 0.92546 1.69934 1.23258 1.30833 1.23034 0.85236 0.79088 0.76756 0.79016 1.18417 1.19138 1.19334 1.20773 0.98000 0.92784 1.10010 1.20105 0.92273 0.97499 1.08938 0.92897 0.92059 0.92821 0.91822 0.91324 0.92011 0.92036 0.93207 0.93336 0.90820 0.94268 0.94649 0.76911 0.88028 0.88367 0.90793 0.88423 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.76 5.69 30.59 0.17 -1.59 16 3 C -0.11 -1.98 4.68 30.59 0.14 -1.84 16 4 C -0.09 -1.86 2.42 -10.79 -0.03 -1.89 16 5 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 6 C -0.14 -2.78 8.82 71.98 0.64 -2.15 16 7 C 0.14 4.01 4.28 86.38 0.37 4.38 16 8 N -0.75 -25.10 5.43 -339.00 -1.84 -26.94 16 9 C 0.11 4.84 6.67 38.67 0.26 5.10 16 10 C -0.18 -8.56 9.23 22.15 0.20 -8.36 16 11 C -0.14 -7.97 8.64 22.48 0.19 -7.78 16 12 C 0.03 1.94 5.57 -21.27 -0.12 1.82 16 13 C -0.51 -28.91 9.03 23.37 0.21 -28.70 16 14 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 15 C 0.03 1.63 5.13 85.22 0.44 2.06 16 16 N -0.84 -46.81 10.96 21.82 0.24 -46.58 16 17 Si 0.98 40.73 29.60 68.60 2.03 42.76 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 21 C -0.20 -9.99 9.74 22.48 0.22 -9.77 16 22 C -0.17 -7.43 9.82 22.15 0.22 -7.21 16 23 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.94 6.56 -2.39 -0.02 0.92 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.03 7.18 -2.39 -0.02 1.01 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 1.14 6.56 -2.39 -0.02 1.12 16 33 H 0.04 1.19 7.91 -2.38 -0.02 1.17 16 34 H 0.04 1.11 7.94 -2.39 -0.02 1.09 16 35 H 0.40 11.42 7.65 -92.70 -0.71 10.71 16 36 H 0.10 4.51 6.68 -2.91 -0.02 4.49 16 37 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 38 H 0.28 14.20 8.30 -92.70 -0.77 13.43 16 39 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -62.00 321.06 4.35 -57.65 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.29 Total: 30.35 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 3.63 Total: -57.25 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -1.60 Total: -73.52 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -62.00 4.35 -57.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.837 kcal (2) G-P(sol) polarization free energy of solvation -62.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds