Wall clock time and date at job start Mon Mar 30 2020 06:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47120 * 2 1 4 4 C 1.53001 * 109.46764 * 119.99595 * 2 1 3 5 5 C 1.53003 * 109.47178 * 65.70937 * 4 2 1 6 6 H 1.09002 * 109.46839 * 303.39356 * 5 4 2 7 7 C 1.52995 * 109.46993 * 183.39357 * 5 4 2 8 8 N 1.46507 * 109.47067 * 63.39458 * 5 4 2 9 9 C 1.38855 * 119.99591 * 205.00181 * 8 5 4 10 10 C 1.39566 * 119.84383 * 359.72546 * 9 8 5 11 11 C 1.36346 * 120.15858 * 179.71961 * 10 9 8 12 12 C 1.40879 * 119.83478 * 0.55111 * 11 10 9 13 13 C 1.41138 * 120.15813 * 179.70019 * 12 11 10 14 14 H 1.07994 * 120.00333 * 207.75301 * 13 12 11 15 15 C 1.39870 * 119.99509 * 27.74282 * 13 12 11 16 16 N 1.30893 * 120.00228 * 12.30984 * 15 13 12 17 17 Si 1.86805 * 119.99763 * 192.30534 * 15 13 12 18 18 H 1.48499 * 109.47082 * 60.00126 * 17 15 13 19 19 H 1.48495 * 109.46923 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47125 * 300.00488 * 17 15 13 21 21 C 1.40891 * 119.68998 * 359.72552 * 12 11 10 22 22 C 1.36338 * 119.83530 * 359.97438 * 21 12 11 23 23 H 1.09006 * 109.47076 * 300.00491 * 1 2 3 24 24 H 1.09004 * 109.46899 * 59.99950 * 1 2 3 25 25 H 1.08990 * 109.46968 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47305 * 239.99780 * 2 1 3 27 27 H 1.09005 * 109.46845 * 184.71715 * 3 2 1 28 28 H 1.09003 * 109.46996 * 304.70916 * 3 2 1 29 29 H 1.08995 * 109.47288 * 64.71431 * 3 2 1 30 30 H 1.08999 * 109.47442 * 305.70653 * 4 2 1 31 31 H 1.09007 * 109.46795 * 185.70703 * 4 2 1 32 32 H 1.08992 * 109.47426 * 299.99752 * 7 5 4 33 33 H 1.09007 * 109.47053 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47087 * 60.00222 * 7 5 4 35 35 H 0.96998 * 119.99416 * 24.99881 * 8 5 4 36 36 H 1.08005 * 119.91996 * 359.97438 * 10 9 8 37 37 H 1.07995 * 120.07928 * 180.27657 * 11 10 9 38 38 H 0.97000 * 120.00250 * 179.97438 * 16 15 13 39 39 H 1.08008 * 120.08064 * 179.97438 * 21 12 11 40 40 H 1.08004 * 119.91846 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6505 -2.1992 1.1797 6 1 0.5698 -2.2851 1.0664 7 6 2.0859 -2.9024 2.4668 8 7 2.3131 -2.8253 0.0329 9 6 1.7614 -3.9555 -0.5556 10 6 0.5786 -4.4955 -0.0485 11 6 0.0282 -5.6017 -0.6250 12 6 0.6626 -6.2065 -1.7279 13 6 0.1022 -7.3555 -2.3260 14 1 0.7392 -8.0672 -2.8299 15 6 -1.2783 -7.5724 -2.2657 16 7 -2.0755 -6.6106 -1.8752 17 14 -1.9841 -9.2349 -2.7428 18 1 -1.4170 -10.2853 -1.8595 19 1 -3.4613 -9.2066 -2.5937 20 1 -1.6351 -9.5341 -4.1548 21 6 1.8595 -5.6592 -2.2309 22 6 2.3952 -4.5491 -1.6482 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1268 1.4436 -0.0845 28 1 1.6095 1.9801 -0.8448 29 1 1.7474 1.9314 0.9291 30 1 1.5956 -0.2697 2.1363 31 1 3.1252 -0.6335 1.3019 32 1 3.1665 -2.8165 2.5801 33 1 1.8088 -3.9555 2.4171 34 1 1.5929 -2.4366 3.3200 35 1 3.1372 -2.4503 -0.3151 36 1 0.0959 -4.0336 0.8002 37 1 -0.8895 -6.0159 -0.2343 38 1 -3.0329 -6.7609 -1.8338 39 1 2.3514 -6.1179 -3.0759 40 1 3.3129 -4.1287 -2.0324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:47 Heat of formation + Delta-G solvation = -3.818793 kcal Electronic energy + Delta-G solvation = -17890.122692 eV Core-core repulsion = 15282.391660 eV Total energy + Delta-G solvation = -2607.731031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.51567 -36.93147 -34.52912 -33.02755 -30.66611 -29.41327 -27.94319 -27.11455 -26.45523 -24.23188 -21.80853 -20.77435 -20.16518 -19.14117 -17.15508 -16.41323 -15.25714 -14.93869 -14.69103 -14.35256 -13.85359 -13.36631 -13.05686 -12.68246 -12.50794 -12.38205 -12.20322 -11.94074 -11.88848 -11.58805 -11.57104 -11.30273 -11.06570 -10.98355 -10.77679 -10.56489 -10.50155 -10.31696 -10.14076 -9.64090 -9.19930 -9.18545 -8.48756 -7.44078 -6.53136 -6.29700 -4.00271 2.97686 3.14678 3.17308 3.20666 3.40006 4.10156 4.37596 4.82330 4.84678 5.00533 5.02213 5.48590 5.49809 5.61229 5.68433 5.77574 5.82391 5.87720 5.91830 6.00702 6.02455 6.05838 6.21641 6.27945 6.31987 6.40323 6.49864 6.52672 6.62242 6.98440 7.02124 7.25481 7.41858 7.62253 7.74964 7.90798 8.20485 8.35664 8.56572 8.77457 8.86851 9.12073 9.20796 10.46489 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033492 B = 0.004882 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.817272 B = 5734.398524 C = 5882.891153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.119 4.119 5 C 0.155 3.845 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.753 5.753 9 C 0.103 3.897 10 C -0.168 4.168 11 C -0.117 4.117 12 C 0.071 3.929 13 C -0.468 4.468 14 H 0.070 0.930 15 C 0.073 3.927 16 N -0.817 5.817 17 Si 0.905 3.095 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.269 1.269 21 C -0.182 4.182 22 C -0.165 4.165 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.382 0.618 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.275 0.725 39 H 0.090 0.910 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 10.538 5.662 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.157 4.157 5 C 0.049 3.951 6 H 0.093 0.907 7 C -0.227 4.227 8 N -0.388 5.388 9 C 0.006 3.994 10 C -0.190 4.190 11 C -0.137 4.137 12 C 0.068 3.932 13 C -0.500 4.500 14 H 0.088 0.912 15 C -0.141 4.141 16 N -0.445 5.445 17 Si 0.730 3.270 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.194 1.194 21 C -0.203 4.203 22 C -0.188 4.188 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.214 0.786 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.090 10.598 5.819 12.763 hybrid contribution -0.112 -0.587 -0.390 0.714 sum 3.978 10.011 5.428 12.063 Atomic orbital electron populations 1.21867 0.95295 1.02390 1.00949 1.21082 0.96064 0.95300 0.98992 1.21853 1.00575 0.96574 1.01330 1.21913 1.00734 0.95131 0.97913 1.20670 0.97828 0.90444 0.86184 0.90700 1.22314 1.00954 1.01847 0.97545 1.43969 1.28542 1.31137 1.35105 1.17366 0.95361 0.90321 0.96392 1.20134 0.96581 1.00081 1.02231 1.20989 1.00606 0.96267 0.95885 1.17483 0.91338 0.93139 0.91252 1.19323 0.91984 1.06321 1.32358 0.91182 1.25756 0.97300 0.97413 0.93640 1.69809 1.04795 1.31659 1.38215 0.86440 0.77757 0.83036 0.79762 1.19202 1.20632 1.19361 1.20579 1.00363 0.97997 1.01322 1.19803 1.00345 0.99668 0.98946 0.93266 0.93116 0.91856 0.90546 0.93082 0.92963 0.93078 0.91478 0.92133 0.93197 0.92020 0.93106 0.78596 0.89336 0.86281 0.91435 0.89183 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.97 37.16 0.33 -1.52 16 2 C -0.10 -1.15 2.86 -90.62 -0.26 -1.41 16 3 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 4 C -0.12 -1.40 4.22 -26.73 -0.11 -1.51 16 5 C 0.16 2.27 2.12 -67.93 -0.14 2.13 16 6 H 0.08 1.22 4.76 -51.93 -0.25 0.98 16 7 C -0.17 -2.34 9.40 37.16 0.35 -1.99 16 8 N -0.75 -12.81 4.51 -52.03 -0.23 -13.05 16 9 C 0.10 2.22 6.65 -83.69 -0.56 1.66 16 10 C -0.17 -3.93 8.73 -39.77 -0.35 -4.28 16 11 C -0.12 -3.11 8.61 -39.26 -0.34 -3.44 16 12 C 0.07 1.93 5.56 -106.79 -0.59 1.34 16 13 C -0.47 -12.92 9.04 -37.87 -0.34 -13.26 16 14 H 0.07 1.87 7.87 -52.49 -0.41 1.45 16 15 C 0.07 1.91 5.23 -17.34 -0.09 1.82 16 16 N -0.82 -22.03 10.84 55.54 0.60 -21.43 16 17 Si 0.90 19.61 29.58 -169.99 -5.03 14.58 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.18 -4.58 9.74 -39.26 -0.38 -4.96 16 22 C -0.17 -3.74 9.82 -39.77 -0.39 -4.13 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.93 6.52 -51.93 -0.34 0.59 16 26 H 0.08 1.06 7.52 -51.93 -0.39 0.67 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.00 7.63 -51.93 -0.40 0.60 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.38 5.91 8.57 -40.82 -0.35 5.56 16 36 H 0.09 1.90 6.02 -52.48 -0.32 1.58 16 37 H 0.12 3.28 6.18 -52.49 -0.32 2.96 16 38 H 0.27 6.84 8.30 -40.82 -0.34 6.50 16 39 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -27.70 319.15 -8.94 -36.64 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.56 Total: 9.10 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -2.53 Total: -30.67 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.37 Total: -34.47 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.70 -8.94 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.826 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds