Wall clock time and date at job start Mon Mar 30 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47236 * 2 1 4 4 C 1.38235 * 119.99881 * 269.72531 * 3 2 1 5 5 C 1.38238 * 119.99843 * 179.78958 * 4 3 2 6 6 C 1.38241 * 119.99667 * 0.43845 * 5 4 3 7 7 C 1.50707 * 119.99567 * 179.83336 * 6 5 4 8 8 H 1.08998 * 109.46892 * 159.97988 * 7 6 5 9 9 C 1.53000 * 109.47317 * 279.98187 * 7 6 5 10 10 C 1.53001 * 109.46682 * 294.35802 * 9 7 6 11 11 N 1.46903 * 109.47074 * 39.98126 * 7 6 5 12 12 C 1.46903 * 110.99917 * 153.03758 * 11 7 6 13 13 C 1.50701 * 109.46769 * 177.49012 * 12 11 7 14 14 H 1.07997 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99673 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99659 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47092 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47043 * 120.00026 * 17 15 13 20 20 H 1.48496 * 109.47183 * 240.00094 * 17 15 13 21 21 C 1.38227 * 120.00127 * 359.81358 * 6 5 4 22 22 C 1.38228 * 120.00392 * 359.97438 * 21 6 5 23 23 H 1.09001 * 109.47465 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47307 * 300.00509 * 1 2 3 25 25 H 1.09008 * 109.46985 * 59.99825 * 1 2 3 26 26 H 1.08999 * 109.46648 * 119.99689 * 2 1 3 27 27 H 1.08994 * 109.47184 * 239.99576 * 2 1 3 28 28 H 1.07995 * 119.99791 * 359.97438 * 4 3 2 29 29 H 1.07992 * 120.00180 * 180.27342 * 5 4 3 30 30 H 1.08997 * 109.47122 * 54.35727 * 9 7 6 31 31 H 1.08996 * 109.46971 * 174.36100 * 9 7 6 32 32 H 1.09005 * 109.47124 * 64.89606 * 10 9 7 33 33 H 1.08997 * 109.46920 * 184.88959 * 10 9 7 34 34 H 1.08998 * 109.47299 * 304.89132 * 10 9 7 35 35 H 1.00903 * 111.00003 * 276.99299 * 11 7 6 36 36 H 1.08997 * 109.47217 * 297.49095 * 12 11 7 37 37 H 1.09000 * 109.46931 * 57.49218 * 12 11 7 38 38 H 0.97002 * 119.99412 * 179.97438 * 16 15 13 39 39 H 1.08009 * 119.99915 * 179.97438 * 21 6 5 40 40 H 1.07998 * 120.00607 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7248 3.3752 -1.1972 6 6 2.9543 4.0272 0.0001 7 6 3.4558 5.4484 0.0000 8 1 3.2445 5.9082 0.9654 9 6 4.9653 5.4566 -0.2494 10 6 5.6802 4.7899 0.9275 11 7 2.7799 6.2061 -1.0617 12 6 2.7184 7.6360 -0.7305 13 6 2.0753 8.3876 -1.8673 14 1 1.7449 7.8562 -2.7476 15 6 1.9078 9.7536 -1.7832 16 7 2.3097 10.4005 -0.7110 17 14 1.1100 10.6853 -3.1920 18 1 0.7503 9.7338 -4.2739 19 1 -0.1158 11.3666 -2.7036 20 1 2.0617 11.6962 -3.7188 21 6 2.7235 3.3757 1.1971 22 6 2.2626 2.0725 1.1972 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 2.0928 1.5597 -2.1324 29 1 2.9049 3.8843 -2.1324 30 1 5.1851 4.9088 -1.1657 31 1 5.3114 6.4854 -0.3492 32 1 5.3997 3.7375 0.9741 33 1 6.7585 4.8727 0.7917 34 1 5.3918 5.2842 1.8552 35 1 3.2303 6.0603 -1.9528 36 1 2.1290 7.7740 0.1759 37 1 3.7275 8.0152 -0.5689 38 1 2.1922 11.3616 -0.6520 39 1 2.9032 3.8850 2.1325 40 1 2.0827 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037224215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:35 Heat of formation + Delta-G solvation = -3.406386 kcal Electronic energy + Delta-G solvation = -17582.493594 eV Core-core repulsion = 14974.780446 eV Total energy + Delta-G solvation = -2607.713148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.46703 -36.70082 -33.83702 -32.87544 -31.44110 -30.58122 -29.29528 -26.81156 -24.57575 -23.22007 -22.56749 -21.60805 -21.00339 -19.70663 -16.77817 -15.83198 -15.41002 -14.98120 -14.61561 -14.44828 -14.05001 -13.66532 -13.49549 -13.34823 -13.05717 -12.96059 -12.33414 -12.14128 -11.79885 -11.76397 -11.47364 -11.27257 -11.16809 -10.98807 -10.81308 -10.69826 -10.62720 -10.46612 -10.26879 -9.88225 -9.16657 -8.59941 -8.49894 -8.16564 -7.26568 -6.03405 -4.05118 1.65831 1.72719 3.31036 3.38363 3.43438 4.04803 4.43389 4.83586 4.91065 5.05301 5.25813 5.28440 5.32489 5.33933 5.35768 5.40808 5.48966 5.54427 5.70692 5.75688 5.81853 5.89995 5.97170 6.06670 6.12906 6.13394 6.22438 6.32568 6.37348 6.46511 6.55558 6.77131 6.85366 7.05915 7.26352 7.33153 7.44752 7.78982 8.12810 8.38543 8.61412 9.04479 9.59841 11.07742 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.004814 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.926081 B = 5814.417020 C = 6524.567359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.121 4.121 5 C -0.094 4.094 6 C -0.051 4.051 7 C 0.120 3.880 8 H 0.078 0.922 9 C -0.147 4.147 10 C -0.146 4.146 11 N -0.681 5.681 12 C 0.194 3.806 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.116 4.116 22 C -0.122 4.122 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.329 0.671 36 H 0.027 0.973 37 H -0.012 1.012 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -18.035 2.707 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.139 4.139 5 C -0.112 4.112 6 C -0.051 4.051 7 C 0.009 3.991 8 H 0.096 0.904 9 C -0.186 4.186 10 C -0.204 4.204 11 N -0.310 5.310 12 C 0.068 3.932 13 C -0.552 4.552 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.135 4.135 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.146 0.854 36 H 0.045 0.955 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.725 -17.957 3.017 18.291 hybrid contribution 0.462 1.013 -0.785 1.363 sum 2.187 -16.944 2.232 17.230 Atomic orbital electron populations 1.21752 0.95012 1.01214 1.02418 1.20477 0.96010 0.93113 1.02204 1.19754 1.00692 0.96052 0.93372 1.20954 1.00768 0.95130 0.97079 1.20937 0.98385 0.93702 0.98207 1.19965 0.96931 0.95454 0.92794 1.20544 0.90468 0.90390 0.97685 0.90355 1.22231 0.96435 1.01293 0.98621 1.21732 0.99531 1.00689 0.98472 1.60785 1.54715 1.12423 1.03068 1.19592 0.95268 0.81003 0.97352 1.21227 1.39102 0.91912 1.03007 0.91957 1.24980 0.95795 0.97679 0.96077 1.69973 1.47491 1.08512 1.27724 0.86441 0.79005 0.79707 0.82262 1.19660 1.20998 1.21110 1.20976 1.00180 0.94718 0.97616 1.20863 1.01013 0.95024 0.97078 0.92815 0.92584 0.92476 0.91543 0.91477 0.86776 0.86080 0.92182 0.91366 0.92731 0.93358 0.92863 0.85398 0.95456 0.99377 0.92984 0.86585 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.08 -0.79 6.07 -27.88 -0.17 -0.96 16 3 C -0.10 -1.25 5.13 -104.62 -0.54 -1.79 16 4 C -0.12 -1.65 9.70 -39.58 -0.38 -2.03 16 5 C -0.09 -1.45 9.32 -39.58 -0.37 -1.82 16 6 C -0.05 -0.82 4.26 -104.62 -0.45 -1.26 16 7 C 0.12 2.14 2.27 -68.86 -0.16 1.99 16 8 H 0.08 1.49 7.67 -51.93 -0.40 1.09 16 9 C -0.15 -2.32 5.36 -26.73 -0.14 -2.46 16 10 C -0.15 -1.96 9.52 37.16 0.35 -1.60 16 11 N -0.68 -14.53 5.68 -109.21 -0.62 -15.15 16 12 C 0.19 5.08 5.23 -4.97 -0.03 5.05 16 13 C -0.51 -14.58 9.29 -34.44 -0.32 -14.90 16 14 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 17 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.12 -1.69 8.92 -39.59 -0.35 -2.04 16 22 C -0.12 -1.59 9.70 -39.58 -0.38 -1.97 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.86 7.31 -52.49 -0.38 1.47 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.19 7.45 -51.93 -0.39 0.80 16 32 H 0.05 0.71 7.08 -51.93 -0.37 0.34 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.33 6.70 7.86 -39.29 -0.31 6.39 16 36 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 37 H -0.01 -0.32 7.45 -51.93 -0.39 -0.70 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.12 1.55 8.04 -52.48 -0.42 1.13 16 40 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -29.90 328.17 -9.46 -39.36 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.84 Total: 3.53 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -2.66 Total: -23.31 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.12 Total: -41.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.90 -9.46 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037224215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.955 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds