Wall clock time and date at job start Mon Mar 30 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47236 * 2 1 4 4 C 1.38235 * 119.99881 * 269.72531 * 3 2 1 5 5 C 1.38238 * 119.99843 * 179.78958 * 4 3 2 6 6 C 1.38241 * 119.99667 * 0.43845 * 5 4 3 7 7 C 1.50707 * 119.99567 * 179.83336 * 6 5 4 8 8 H 1.08998 * 109.46892 * 159.97988 * 7 6 5 9 9 C 1.53000 * 109.47317 * 279.98187 * 7 6 5 10 10 C 1.53001 * 109.46682 * 294.35802 * 9 7 6 11 11 N 1.46903 * 109.47074 * 39.98126 * 7 6 5 12 12 C 1.46903 * 110.99917 * 153.03758 * 11 7 6 13 13 C 1.50701 * 109.46769 * 177.49012 * 12 11 7 14 14 H 1.07997 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99673 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99659 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99887 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47092 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47043 * 120.00026 * 17 15 13 20 20 H 1.48496 * 109.47183 * 240.00094 * 17 15 13 21 21 C 1.38227 * 120.00127 * 359.81358 * 6 5 4 22 22 C 1.38228 * 120.00392 * 359.97438 * 21 6 5 23 23 H 1.09001 * 109.47465 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47307 * 300.00509 * 1 2 3 25 25 H 1.09008 * 109.46985 * 59.99825 * 1 2 3 26 26 H 1.08999 * 109.46648 * 119.99689 * 2 1 3 27 27 H 1.08994 * 109.47184 * 239.99576 * 2 1 3 28 28 H 1.07995 * 119.99791 * 359.97438 * 4 3 2 29 29 H 1.07992 * 120.00180 * 180.27342 * 5 4 3 30 30 H 1.08997 * 109.47122 * 54.35727 * 9 7 6 31 31 H 1.08996 * 109.46971 * 174.36100 * 9 7 6 32 32 H 1.09005 * 109.47124 * 64.89606 * 10 9 7 33 33 H 1.08997 * 109.46920 * 184.88959 * 10 9 7 34 34 H 1.08998 * 109.47299 * 304.89132 * 10 9 7 35 35 H 1.00903 * 111.00003 * 276.99299 * 11 7 6 36 36 H 1.08997 * 109.47217 * 297.49095 * 12 11 7 37 37 H 1.09000 * 109.46931 * 57.49218 * 12 11 7 38 38 H 0.97002 * 119.99412 * 179.97438 * 16 15 13 39 39 H 1.08009 * 119.99915 * 179.97438 * 21 6 5 40 40 H 1.07998 * 120.00607 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7248 3.3752 -1.1972 6 6 2.9543 4.0272 0.0001 7 6 3.4558 5.4484 0.0000 8 1 3.2445 5.9082 0.9654 9 6 4.9653 5.4566 -0.2494 10 6 5.6802 4.7899 0.9275 11 7 2.7799 6.2061 -1.0617 12 6 2.7184 7.6360 -0.7305 13 6 2.0753 8.3876 -1.8673 14 1 1.7449 7.8562 -2.7476 15 6 1.9078 9.7536 -1.7832 16 7 2.3097 10.4005 -0.7110 17 14 1.1100 10.6853 -3.1920 18 1 0.7503 9.7338 -4.2739 19 1 -0.1158 11.3666 -2.7036 20 1 2.0617 11.6962 -3.7188 21 6 2.7235 3.3757 1.1971 22 6 2.2626 2.0725 1.1972 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 2.0928 1.5597 -2.1324 29 1 2.9049 3.8843 -2.1324 30 1 5.1851 4.9088 -1.1657 31 1 5.3114 6.4854 -0.3492 32 1 5.3997 3.7375 0.9741 33 1 6.7585 4.8727 0.7917 34 1 5.3918 5.2842 1.8552 35 1 3.2303 6.0603 -1.9528 36 1 2.1290 7.7740 0.1759 37 1 3.7275 8.0152 -0.5689 38 1 2.1922 11.3616 -0.6520 39 1 2.9032 3.8850 2.1325 40 1 2.0827 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037224215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:35 Heat of formation + Delta-G solvation = -19.606088 kcal Electronic energy + Delta-G solvation = -17583.196066 eV Core-core repulsion = 14974.780446 eV Total energy + Delta-G solvation = -2608.415620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62351 -38.10623 -35.41762 -34.32449 -33.09409 -31.69947 -30.43097 -28.60153 -26.04125 -24.34171 -23.85560 -23.29288 -22.18958 -20.94934 -18.72179 -17.30636 -16.66984 -16.38245 -16.16071 -15.85283 -15.25445 -15.13486 -14.61849 -14.43818 -14.34423 -14.05520 -13.91634 -13.70619 -13.17739 -13.12831 -12.84519 -12.67375 -12.56972 -12.38713 -12.21154 -12.03814 -11.96972 -11.78757 -11.57253 -11.50993 -11.19624 -10.68649 -9.69575 -9.31924 -9.04361 -8.23576 -6.34705 0.54795 0.62654 1.40006 1.40856 1.54701 2.39097 2.93048 3.09869 3.56563 3.88663 3.97893 4.05622 4.08703 4.20214 4.27895 4.39077 4.53327 4.58413 4.59872 4.69867 4.78819 4.82081 4.91056 5.03312 5.10482 5.11836 5.13167 5.15132 5.24649 5.28464 5.32346 5.36739 5.44615 5.58816 5.66786 5.82070 5.86870 6.02290 6.23944 6.45504 6.71498 6.88883 7.36287 8.88224 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.004814 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.926081 B = 5814.417020 C = 6524.567359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.095 4.095 4 C -0.125 4.125 5 C -0.110 4.110 6 C -0.070 4.070 7 C 0.123 3.877 8 H 0.058 0.942 9 C -0.140 4.140 10 C -0.138 4.138 11 N -0.680 5.680 12 C 0.212 3.788 13 C -0.535 4.535 14 H 0.063 0.937 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.973 3.027 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.276 1.276 21 C -0.125 4.125 22 C -0.122 4.122 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.334 0.666 36 H -0.005 1.005 37 H -0.035 1.035 38 H 0.265 0.735 39 H 0.122 0.878 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -20.039 2.111 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.095 4.095 4 C -0.143 4.143 5 C -0.128 4.128 6 C -0.071 4.071 7 C 0.012 3.988 8 H 0.076 0.924 9 C -0.179 4.179 10 C -0.196 4.196 11 N -0.309 5.309 12 C 0.084 3.916 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.202 1.202 21 C -0.143 4.143 22 C -0.140 4.140 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.151 0.849 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.152 0.848 36 H 0.013 0.987 37 H -0.017 1.017 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.308 -19.990 2.423 20.179 hybrid contribution 0.589 1.546 -0.549 1.743 sum 1.897 -18.444 1.874 18.635 Atomic orbital electron populations 1.21746 0.94651 1.02303 1.01629 1.20543 0.96161 0.91222 1.03668 1.20153 0.99142 0.97442 0.92778 1.21199 1.00163 0.94418 0.98526 1.20988 0.99403 0.94787 0.97623 1.19780 0.99011 0.94284 0.93996 1.20522 0.91727 0.91169 0.95348 0.92361 1.22123 0.95194 1.00276 1.00329 1.21658 1.00143 1.00724 0.97051 1.60654 1.56131 1.09763 1.04390 1.19189 0.93094 0.83741 0.95542 1.21574 1.39551 0.92711 1.03532 0.91830 1.25942 0.96136 0.98664 0.98873 1.70100 1.48419 1.09039 1.29824 0.85282 0.77992 0.78218 0.78789 1.18683 1.20434 1.20185 1.21116 1.00363 0.95619 0.97226 1.21173 0.99990 0.94357 0.98480 0.90843 0.93209 0.93456 0.89948 0.90224 0.84853 0.86768 0.91304 0.93757 0.91883 0.91740 0.92991 0.84783 0.98733 1.01695 0.92620 0.86022 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.89 71.98 0.71 -1.61 16 2 C -0.08 -1.28 6.07 29.85 0.18 -1.10 16 3 C -0.10 -2.17 5.13 -19.87 -0.10 -2.28 16 4 C -0.13 -3.19 9.70 22.27 0.22 -2.97 16 5 C -0.11 -3.34 9.32 22.27 0.21 -3.13 16 6 C -0.07 -2.26 4.26 -19.86 -0.08 -2.35 16 7 C 0.12 4.55 2.27 44.17 0.10 4.65 16 8 H 0.06 2.36 7.67 -2.39 -0.02 2.34 16 9 C -0.14 -4.55 5.36 30.59 0.16 -4.38 16 10 C -0.14 -3.62 9.52 71.98 0.69 -2.94 16 11 N -0.68 -30.25 5.68 -499.44 -2.84 -33.08 16 12 C 0.21 11.65 5.23 85.56 0.45 12.10 16 13 C -0.54 -31.13 9.29 25.60 0.24 -30.90 16 14 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 15 C 0.00 0.12 5.46 84.66 0.46 0.58 16 16 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 17 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 C -0.12 -3.53 8.92 22.26 0.20 -3.33 16 22 C -0.12 -2.92 9.70 22.27 0.22 -2.70 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 27 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 28 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.11 3.53 7.31 -2.91 -0.02 3.51 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.63 7.45 -2.39 -0.02 1.61 16 32 H 0.06 1.56 7.08 -2.38 -0.02 1.54 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.33 14.12 7.86 -89.69 -0.70 13.41 16 36 H -0.01 -0.33 8.11 -2.39 -0.02 -0.35 16 37 H -0.03 -2.02 7.45 -2.39 -0.02 -2.04 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.12 3.20 8.04 -2.91 -0.02 3.18 16 40 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -65.10 328.17 3.40 -61.70 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.29 Total: 21.70 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 3.64 Total: -40.36 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -2.55 Total: -89.95 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.10 3.40 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037224215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.092 kcal (2) G-P(sol) polarization free energy of solvation -65.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds