Wall clock time and date at job start Mon Mar 30 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47013 * 2 1 4 4 C 1.38238 * 120.00158 * 90.00010 * 3 2 1 5 5 C 1.38230 * 120.00038 * 179.73072 * 4 3 2 6 6 C 1.38242 * 120.00142 * 0.25324 * 5 4 3 7 7 C 1.50696 * 120.00030 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47359 * 20.00162 * 7 6 5 9 9 C 1.52993 * 109.47127 * 259.99936 * 7 6 5 10 10 C 1.53008 * 109.47334 * 174.41179 * 9 7 6 11 11 N 1.46904 * 109.47338 * 139.99619 * 7 6 5 12 12 C 1.46894 * 111.00104 * 274.15848 * 11 7 6 13 13 C 1.50705 * 109.46937 * 174.77769 * 12 11 7 14 14 H 1.08002 * 120.00058 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99758 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99468 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46983 * 60.00564 * 17 15 13 19 19 H 1.48507 * 109.46647 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47050 * 300.00029 * 17 15 13 21 21 C 1.38236 * 119.99803 * 0.02562 * 6 5 4 22 22 C 1.38234 * 119.99876 * 0.02562 * 21 6 5 23 23 H 1.08998 * 109.47015 * 299.99512 * 1 2 3 24 24 H 1.08995 * 109.47280 * 60.00263 * 1 2 3 25 25 H 1.08999 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47015 * 240.00488 * 2 1 3 27 27 H 1.08995 * 109.47280 * 119.99737 * 2 1 3 28 28 H 1.07999 * 119.99689 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.99879 * 180.28107 * 5 4 3 30 30 H 1.08997 * 109.47194 * 294.40773 * 9 7 6 31 31 H 1.08997 * 109.47399 * 54.41167 * 9 7 6 32 32 H 1.08991 * 109.46959 * 66.10871 * 10 9 7 33 33 H 1.09002 * 109.47206 * 186.11417 * 10 9 7 34 34 H 1.09003 * 109.46362 * 306.11032 * 10 9 7 35 35 H 1.00899 * 110.99790 * 150.19957 * 11 7 6 36 36 H 1.09000 * 109.47599 * 294.77935 * 12 11 7 37 37 H 1.09005 * 109.47052 * 54.78359 * 12 11 7 38 38 H 0.97001 * 120.00320 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.99899 * 179.97438 * 21 6 5 40 40 H 1.07999 * 119.99702 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7287 3.3739 1.1971 6 6 2.9594 4.0255 -0.0001 7 6 3.4681 5.4440 -0.0001 8 1 3.9237 5.6667 0.9648 9 6 2.3025 6.4037 -0.2473 10 6 2.7919 7.8468 -0.1093 11 7 4.4692 5.6053 -1.0630 12 6 5.8044 5.2134 -0.5926 13 6 6.7782 5.2694 -1.7414 14 1 6.4392 5.5668 -2.7227 15 6 8.1022 4.9419 -1.5393 16 7 8.5152 4.5803 -0.3443 17 14 9.3094 5.0121 -2.9632 18 1 9.3600 6.3951 -3.5015 19 1 10.6593 4.6157 -2.4876 20 1 8.8685 4.0805 -4.0322 21 6 2.7236 3.3758 -1.1972 22 6 2.2565 2.0747 -1.1971 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0823 1.5635 2.1324 29 1 2.9130 3.8815 2.1324 30 1 1.9103 6.2477 -1.2522 31 1 1.5157 6.2155 0.4831 32 1 3.4997 8.0683 -0.9079 33 1 1.9426 8.5266 -0.1775 34 1 3.2820 7.9734 0.8561 35 1 4.4730 6.5507 -1.4156 36 1 6.1284 5.8971 0.1921 37 1 5.7669 4.1982 -0.1973 38 1 9.4466 4.3495 -0.2022 39 1 2.9034 3.8849 -2.1325 40 1 2.0718 1.5673 -2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037224216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:38 Heat of formation + Delta-G solvation = -2.091162 kcal Electronic energy + Delta-G solvation = -17725.411635 eV Core-core repulsion = 15117.755519 eV Total energy + Delta-G solvation = -2607.656116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27478 -36.66574 -33.68420 -32.97797 -31.19890 -30.44296 -29.40141 -26.62577 -24.91800 -23.07577 -22.31727 -21.53449 -20.88371 -19.52955 -16.35977 -15.98210 -15.42775 -14.99666 -14.64616 -14.35578 -14.14941 -13.53731 -13.45755 -13.14716 -12.93356 -12.53526 -12.44665 -12.21662 -12.07508 -11.59430 -11.27796 -11.20485 -11.11397 -11.02698 -10.78609 -10.56305 -10.55606 -10.34704 -10.17735 -9.84055 -9.15089 -8.44350 -8.42534 -8.01704 -7.29958 -5.98831 -4.00597 1.79562 1.90790 3.35456 3.39309 3.42334 4.20099 4.45856 4.93816 5.00667 5.09013 5.26234 5.36093 5.36919 5.38328 5.44226 5.48590 5.55200 5.65624 5.73584 5.86219 5.86935 5.98003 6.06295 6.11633 6.17067 6.18518 6.21707 6.39658 6.48426 6.56912 6.60144 6.89609 7.02149 7.17409 7.37148 7.43359 7.50762 7.83145 8.17997 8.46301 8.63936 9.08130 9.63896 11.12128 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.005923 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.590839 B = 4725.841011 C = 5702.352042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.095 4.095 4 C -0.125 4.125 5 C -0.118 4.118 6 C -0.061 4.061 7 C 0.121 3.879 8 H 0.043 0.957 9 C -0.118 4.118 10 C -0.155 4.155 11 N -0.682 5.682 12 C 0.197 3.803 13 C -0.511 4.511 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.077 4.077 22 C -0.126 4.126 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.330 0.670 36 H -0.016 1.016 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.130 0.870 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.321 -3.008 1.986 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.143 4.143 5 C -0.137 4.137 6 C -0.062 4.062 7 C 0.010 3.990 8 H 0.061 0.939 9 C -0.156 4.156 10 C -0.212 4.212 11 N -0.314 5.314 12 C 0.071 3.929 13 C -0.550 4.550 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.095 4.095 22 C -0.144 4.144 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.002 0.998 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.273 -3.669 1.801 15.811 hybrid contribution 1.173 0.669 -0.027 1.350 sum -14.101 -3.000 1.774 14.525 Atomic orbital electron populations 1.21737 0.95205 1.01144 1.02077 1.20486 0.95741 0.93305 1.02427 1.19750 1.00604 0.95778 0.93419 1.20812 1.01543 0.94934 0.97032 1.20975 1.00227 0.94890 0.97563 1.19918 0.97350 0.96106 0.92830 1.20418 0.92787 0.90701 0.95100 0.93938 1.21662 0.97525 0.94199 1.02215 1.21825 1.01038 0.96257 1.02091 1.60666 1.07844 1.29264 1.33602 1.19552 0.82869 0.95699 0.94827 1.21136 0.92685 1.45292 0.95872 0.92073 1.24978 0.98367 0.95432 0.95748 1.69955 1.16352 1.46207 1.21263 0.86573 0.79975 0.78432 0.82476 1.20297 1.21388 1.20208 1.21024 0.95866 0.93889 0.98695 1.20997 1.01099 0.95328 0.96991 0.92745 0.92640 0.92859 0.91352 0.91479 0.86950 0.86834 0.91261 0.92103 0.92140 0.92923 0.92895 0.85095 0.99777 0.95427 0.92937 0.85230 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 37.16 0.37 -1.05 16 2 C -0.08 -0.95 6.06 -27.88 -0.17 -1.12 16 3 C -0.10 -1.40 5.13 -104.62 -0.54 -1.94 16 4 C -0.13 -1.88 9.70 -39.58 -0.38 -2.27 16 5 C -0.12 -1.95 9.67 -39.58 -0.38 -2.33 16 6 C -0.06 -1.10 4.69 -104.62 -0.49 -1.59 16 7 C 0.12 2.17 2.24 -68.87 -0.15 2.02 16 8 H 0.04 0.82 7.71 -51.93 -0.40 0.42 16 9 C -0.12 -1.70 5.49 -26.73 -0.15 -1.85 16 10 C -0.15 -2.05 9.64 37.16 0.36 -1.69 16 11 N -0.68 -14.45 5.51 -109.22 -0.60 -15.05 16 12 C 0.20 5.23 5.21 -4.98 -0.03 5.20 16 13 C -0.51 -14.63 9.36 -34.44 -0.32 -14.95 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 17 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.08 -1.35 9.32 -39.58 -0.37 -1.72 16 22 C -0.13 -1.99 9.70 -39.58 -0.38 -2.37 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.11 1.71 8.04 -52.49 -0.42 1.29 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.84 6.67 -51.93 -0.35 0.49 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.33 6.62 6.64 -39.29 -0.26 6.36 16 36 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 37 H 0.03 0.81 7.95 -51.93 -0.41 0.40 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.13 2.34 7.72 -52.49 -0.41 1.94 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -30.46 329.49 -9.52 -39.98 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.86 Total: 3.83 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -2.74 Total: -24.13 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.13 Total: -41.62 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.46 -9.52 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037224216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.888 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds