Wall clock time and date at job start Mon Mar 30 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47013 * 2 1 4 4 C 1.38238 * 120.00158 * 90.00010 * 3 2 1 5 5 C 1.38230 * 120.00038 * 179.73072 * 4 3 2 6 6 C 1.38242 * 120.00142 * 0.25324 * 5 4 3 7 7 C 1.50696 * 120.00030 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47359 * 20.00162 * 7 6 5 9 9 C 1.52993 * 109.47127 * 259.99936 * 7 6 5 10 10 C 1.53008 * 109.47334 * 174.41179 * 9 7 6 11 11 N 1.46904 * 109.47338 * 139.99619 * 7 6 5 12 12 C 1.46894 * 111.00104 * 274.15848 * 11 7 6 13 13 C 1.50705 * 109.46937 * 174.77769 * 12 11 7 14 14 H 1.08002 * 120.00058 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99758 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99468 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46983 * 60.00564 * 17 15 13 19 19 H 1.48507 * 109.46647 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47050 * 300.00029 * 17 15 13 21 21 C 1.38236 * 119.99803 * 0.02562 * 6 5 4 22 22 C 1.38234 * 119.99876 * 0.02562 * 21 6 5 23 23 H 1.08998 * 109.47015 * 299.99512 * 1 2 3 24 24 H 1.08995 * 109.47280 * 60.00263 * 1 2 3 25 25 H 1.08999 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47015 * 240.00488 * 2 1 3 27 27 H 1.08995 * 109.47280 * 119.99737 * 2 1 3 28 28 H 1.07999 * 119.99689 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.99879 * 180.28107 * 5 4 3 30 30 H 1.08997 * 109.47194 * 294.40773 * 9 7 6 31 31 H 1.08997 * 109.47399 * 54.41167 * 9 7 6 32 32 H 1.08991 * 109.46959 * 66.10871 * 10 9 7 33 33 H 1.09002 * 109.47206 * 186.11417 * 10 9 7 34 34 H 1.09003 * 109.46362 * 306.11032 * 10 9 7 35 35 H 1.00899 * 110.99790 * 150.19957 * 11 7 6 36 36 H 1.09000 * 109.47599 * 294.77935 * 12 11 7 37 37 H 1.09005 * 109.47052 * 54.78359 * 12 11 7 38 38 H 0.97001 * 120.00320 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.99899 * 179.97438 * 21 6 5 40 40 H 1.07999 * 119.99702 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7287 3.3739 1.1971 6 6 2.9594 4.0255 -0.0001 7 6 3.4681 5.4440 -0.0001 8 1 3.9237 5.6667 0.9648 9 6 2.3025 6.4037 -0.2473 10 6 2.7919 7.8468 -0.1093 11 7 4.4692 5.6053 -1.0630 12 6 5.8044 5.2134 -0.5926 13 6 6.7782 5.2694 -1.7414 14 1 6.4392 5.5668 -2.7227 15 6 8.1022 4.9419 -1.5393 16 7 8.5152 4.5803 -0.3443 17 14 9.3094 5.0121 -2.9632 18 1 9.3600 6.3951 -3.5015 19 1 10.6593 4.6157 -2.4876 20 1 8.8685 4.0805 -4.0322 21 6 2.7236 3.3758 -1.1972 22 6 2.2565 2.0747 -1.1971 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0823 1.5635 2.1324 29 1 2.9130 3.8815 2.1324 30 1 1.9103 6.2477 -1.2522 31 1 1.5157 6.2155 0.4831 32 1 3.4997 8.0683 -0.9079 33 1 1.9426 8.5266 -0.1775 34 1 3.2820 7.9734 0.8561 35 1 4.4730 6.5507 -1.4156 36 1 6.1284 5.8971 0.1921 37 1 5.7669 4.1982 -0.1973 38 1 9.4466 4.3495 -0.2022 39 1 2.9034 3.8849 -2.1325 40 1 2.0718 1.5673 -2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037224216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:37 Heat of formation + Delta-G solvation = -18.645931 kcal Electronic energy + Delta-G solvation = -17726.129504 eV Core-core repulsion = 15117.755519 eV Total energy + Delta-G solvation = -2608.373984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55612 -38.10796 -35.31151 -34.47590 -32.91471 -31.70389 -30.59464 -28.45832 -26.38039 -24.25289 -23.68555 -23.35337 -22.06979 -20.88069 -18.51954 -17.28251 -16.86171 -16.65822 -16.06134 -15.86549 -15.53341 -14.71858 -14.53110 -14.38740 -14.22877 -14.07772 -14.05371 -13.84157 -13.20192 -13.11961 -12.80250 -12.73533 -12.61203 -12.26472 -12.17914 -12.06088 -11.85910 -11.74594 -11.57855 -11.40187 -11.23861 -10.65175 -9.70304 -9.28525 -9.12880 -8.21380 -6.32776 0.53450 0.63162 1.39857 1.43839 1.51631 2.39781 2.93280 3.11535 3.53406 3.87996 4.01697 4.04899 4.13151 4.23676 4.27426 4.37690 4.48580 4.57445 4.66471 4.73940 4.79791 4.83498 4.89979 5.05825 5.07197 5.11795 5.14192 5.21428 5.25117 5.28001 5.33128 5.40156 5.43187 5.61086 5.63484 5.80783 5.87916 6.06943 6.24815 6.49793 6.75105 6.90992 7.38190 8.89891 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.005923 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.590839 B = 4725.841011 C = 5702.352042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.127 4.127 5 C -0.132 4.132 6 C -0.085 4.085 7 C 0.121 3.879 8 H 0.025 0.975 9 C -0.108 4.108 10 C -0.152 4.152 11 N -0.675 5.675 12 C 0.218 3.782 13 C -0.532 4.532 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.096 4.096 22 C -0.133 4.133 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.138 0.862 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.337 0.663 36 H -0.044 1.044 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.117 0.883 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -3.652 1.255 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.086 4.086 7 C 0.010 3.990 8 H 0.043 0.957 9 C -0.146 4.146 10 C -0.210 4.210 11 N -0.308 5.308 12 C 0.091 3.909 13 C -0.570 4.570 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.796 3.204 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.115 4.115 22 C -0.151 4.151 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.156 0.844 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.157 0.843 36 H -0.027 1.027 37 H 0.010 0.990 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.304 -4.299 1.065 16.895 hybrid contribution 1.423 0.822 0.257 1.664 sum -14.881 -3.478 1.322 15.339 Atomic orbital electron populations 1.21705 0.93682 1.02423 1.01933 1.20560 0.96958 0.91078 1.03286 1.20163 0.99237 0.97290 0.92762 1.21153 1.00565 0.94361 0.98446 1.21185 1.00645 0.95842 0.97405 1.19994 0.98737 0.96184 0.93696 1.20500 0.93005 0.92407 0.93044 0.95723 1.21597 0.96265 0.93845 1.02868 1.21814 1.01829 0.95982 1.01339 1.60525 1.05854 1.29697 1.34676 1.19101 0.85370 0.92945 0.93530 1.21507 0.93597 1.45514 0.96407 0.91705 1.25953 1.00429 0.94641 0.98655 1.70097 1.16950 1.46918 1.23626 0.85402 0.77160 0.79086 0.78742 1.18894 1.20848 1.19435 1.21039 0.97300 0.95033 0.98086 1.21250 1.00684 0.94705 0.98458 0.92749 0.92966 0.90889 0.90751 0.90416 0.84398 0.86103 0.90921 0.90440 0.93113 0.90175 0.93506 0.84332 1.02662 0.99039 0.92721 0.86447 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.89 71.98 0.71 -1.66 16 2 C -0.08 -1.68 6.06 29.85 0.18 -1.50 16 3 C -0.09 -2.64 5.13 -19.86 -0.10 -2.74 16 4 C -0.13 -3.68 9.70 22.27 0.22 -3.47 16 5 C -0.13 -4.39 9.67 22.27 0.22 -4.18 16 6 C -0.09 -3.13 4.69 -19.87 -0.09 -3.22 16 7 C 0.12 4.48 2.24 44.16 0.10 4.57 16 8 H 0.02 1.00 7.71 -2.39 -0.02 0.98 16 9 C -0.11 -3.06 5.49 30.59 0.17 -2.89 16 10 C -0.15 -3.91 9.64 71.98 0.69 -3.21 16 11 N -0.68 -29.63 5.51 -499.47 -2.75 -32.38 16 12 C 0.22 12.12 5.21 85.56 0.45 12.57 16 13 C -0.53 -31.08 9.36 25.60 0.24 -30.84 16 14 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 17 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 C -0.10 -3.46 9.32 22.27 0.21 -3.25 16 22 C -0.13 -4.12 9.70 22.27 0.22 -3.90 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 27 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 28 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 29 H 0.12 3.69 8.04 -2.91 -0.02 3.67 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.39 6.67 -2.39 -0.02 1.37 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.34 13.86 6.64 -89.69 -0.60 13.26 16 36 H -0.04 -2.65 8.14 -2.39 -0.02 -2.67 16 37 H -0.01 -0.53 7.95 -2.38 -0.02 -0.55 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.12 4.39 7.72 -2.91 -0.02 4.37 16 40 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -66.59 329.49 3.61 -62.98 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.39 Total: 23.22 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 3.66 Total: -43.20 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -2.47 Total: -90.17 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.59 3.61 -62.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037224216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.337 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds