Wall clock time and date at job start Mon Mar 30 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47168 * 2 1 4 4 C 1.53004 * 109.47296 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47119 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47094 * 54.99695 * 5 4 3 7 7 N 1.46906 * 109.47092 * 295.00039 * 5 4 3 8 8 C 1.46901 * 110.99793 * 155.00227 * 7 5 4 9 9 C 1.50701 * 109.46921 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99594 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99875 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47061 * 90.00257 * 13 11 9 15 15 H 1.48497 * 109.46906 * 209.99430 * 13 11 9 16 16 H 1.48498 * 109.47403 * 329.99876 * 13 11 9 17 17 C 1.50702 * 109.46896 * 175.00111 * 5 4 3 18 18 C 1.38229 * 119.99899 * 79.73114 * 17 5 4 19 19 C 1.38242 * 119.99794 * 179.78777 * 18 17 5 20 20 C 1.38236 * 119.99808 * 0.43793 * 19 18 17 21 21 C 1.38236 * 120.00036 * 359.81168 * 20 19 18 22 22 C 1.38235 * 119.99543 * 259.99790 * 17 5 4 23 23 H 1.08998 * 109.47244 * 299.99835 * 1 2 3 24 24 H 1.08995 * 109.46942 * 60.00492 * 1 2 3 25 25 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47332 * 239.99618 * 2 1 3 27 27 H 1.09004 * 109.46894 * 119.99804 * 2 1 3 28 28 H 1.08999 * 109.47305 * 59.99602 * 3 2 1 29 29 H 1.09004 * 109.47053 * 299.99706 * 3 2 1 30 30 H 1.08998 * 109.47091 * 60.00180 * 4 3 2 31 31 H 1.08995 * 109.46967 * 299.99602 * 4 3 2 32 32 H 1.00898 * 110.99995 * 278.95304 * 7 5 4 33 33 H 1.09002 * 109.47401 * 59.99808 * 8 7 5 34 34 H 1.09001 * 109.46874 * 299.99821 * 8 7 5 35 35 H 0.97002 * 119.99739 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.00313 * 359.97438 * 18 17 5 37 37 H 1.08000 * 120.00004 * 180.26719 * 19 18 17 38 38 H 1.08005 * 120.00061 * 179.83506 * 20 19 18 39 39 H 1.08000 * 120.00095 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.00412 * 359.97438 * 22 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6449 3.4246 0.8413 7 7 3.6918 3.5410 -1.2558 8 6 3.6130 4.9981 -1.0861 9 6 3.2138 5.6350 -2.3922 10 1 3.0360 5.0191 -3.2613 11 6 3.0745 7.0041 -2.4774 12 7 2.7257 7.5599 -3.6171 13 14 3.3813 8.0694 -0.9739 14 1 4.8116 8.4668 -0.9323 15 1 2.5318 9.2852 -1.0471 16 1 3.0445 7.3033 0.2528 17 6 5.5818 2.8868 0.1244 18 6 6.3676 2.6395 -0.9856 19 6 7.7454 2.6455 -0.8723 20 6 8.3370 2.8900 0.3529 21 6 7.5511 3.1323 1.4640 22 6 6.1734 3.1305 1.3498 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9289 0.8909 32 1 4.3260 3.2977 -2.0019 33 1 4.5857 5.3812 -0.7777 34 1 2.8708 5.2354 -0.3239 35 1 2.6280 8.5231 -3.6771 36 1 5.9053 2.4445 -1.9419 37 1 8.3594 2.4565 -1.7404 38 1 9.4134 2.8921 0.4419 39 1 8.0134 3.3237 2.4211 40 1 5.5595 3.3199 2.2178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:54 Heat of formation + Delta-G solvation = -16.147789 kcal Electronic energy + Delta-G solvation = -17771.670065 eV Core-core repulsion = 15163.404409 eV Total energy + Delta-G solvation = -2608.265657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57763 -37.86983 -35.96525 -34.67928 -32.57390 -31.76367 -30.83461 -28.80848 -26.21045 -23.88893 -23.42538 -22.92006 -21.73766 -21.20926 -18.95900 -17.97565 -16.83250 -16.45063 -16.23542 -15.86223 -15.41563 -15.05957 -14.79661 -14.63250 -14.47822 -14.19795 -13.82523 -13.76521 -13.49937 -13.24095 -12.82086 -12.71323 -12.27244 -12.16548 -11.98836 -11.91326 -11.73874 -11.63518 -11.48542 -11.39306 -11.26649 -10.83524 -9.81456 -9.59449 -9.14644 -8.31842 -6.35261 0.46633 0.50824 1.31102 1.32490 1.43876 2.31403 2.89466 3.02457 3.50822 3.70463 3.99090 4.11955 4.18431 4.22251 4.28156 4.34323 4.42250 4.59985 4.63614 4.67085 4.77935 4.79820 4.93038 5.00045 5.06867 5.12512 5.12949 5.16777 5.21091 5.24375 5.40363 5.51239 5.53586 5.58967 5.61619 5.65127 5.69042 5.99985 6.13893 6.54619 6.65364 6.76027 7.29526 8.84906 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.008348 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.653050 B = 3353.368918 C = 5124.056795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.111 4.111 4 C -0.086 4.086 5 C 0.120 3.880 6 H 0.072 0.928 7 N -0.670 5.670 8 C 0.181 3.819 9 C -0.524 4.524 10 H 0.038 0.962 11 C 0.010 3.990 12 N -0.946 5.946 13 Si 0.946 3.054 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.252 1.252 17 C -0.117 4.117 18 C -0.133 4.133 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.130 4.130 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.335 0.665 33 H -0.023 1.023 34 H 0.022 0.978 35 H 0.267 0.733 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.978 -13.736 12.475 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.148 4.148 4 C -0.124 4.124 5 C 0.010 3.990 6 H 0.090 0.910 7 N -0.301 5.301 8 C 0.053 3.947 9 C -0.562 4.562 10 H 0.057 0.943 11 C -0.187 4.187 12 N -0.586 5.586 13 Si 0.769 3.231 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.176 1.176 17 C -0.119 4.119 18 C -0.152 4.152 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.149 4.149 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.154 0.846 33 H -0.006 1.006 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.231 -13.670 12.476 19.528 hybrid contribution 0.807 1.190 -0.061 1.439 sum 7.037 -12.480 12.415 18.958 Atomic orbital electron populations 1.21768 0.95803 1.01851 1.01504 1.21500 0.95998 0.96105 1.02010 1.21474 0.94886 0.96884 1.01603 1.21444 0.95815 0.93330 1.01839 1.20754 0.88619 0.96671 0.92971 0.91020 1.60655 1.54852 1.08682 1.05901 1.19680 0.93652 0.85928 0.95466 1.21322 1.46096 0.92226 0.96568 0.94322 1.25815 0.94438 0.99415 0.99047 1.70046 1.49621 1.11620 1.27340 0.85733 0.78639 0.78371 0.80312 1.19492 1.20360 1.17569 1.20878 0.97207 0.99340 0.94484 1.21104 0.94734 1.01027 0.98288 1.21400 0.94316 0.99746 0.98844 1.21470 1.01061 0.99825 0.92535 1.21461 0.93359 0.99379 0.99863 1.21293 0.95868 1.00669 0.97025 0.92768 0.93745 0.91693 0.92298 0.91241 0.92910 0.92986 0.92312 0.90722 0.84558 1.00558 0.96009 0.92377 0.86634 0.84479 0.83633 0.83677 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.49 16 2 C -0.12 -2.64 5.93 30.59 0.18 -2.46 16 3 C -0.11 -3.08 5.10 30.59 0.16 -2.92 16 4 C -0.09 -2.36 4.87 30.60 0.15 -2.21 16 5 C 0.12 3.96 2.22 44.17 0.10 4.06 16 6 H 0.07 2.43 7.66 -2.39 -0.02 2.41 16 7 N -0.67 -27.69 5.68 -499.43 -2.83 -30.53 16 8 C 0.18 8.93 4.30 85.56 0.37 9.30 16 9 C -0.52 -31.01 9.87 25.60 0.25 -30.76 16 10 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 11 C 0.01 0.62 5.47 84.66 0.46 1.09 16 12 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 13 Si 0.95 45.33 27.47 68.60 1.88 47.22 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 16 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 17 C -0.12 -3.63 4.71 -19.87 -0.09 -3.73 16 18 C -0.13 -4.04 9.11 22.27 0.20 -3.84 16 19 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 20 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 21 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 22 C -0.13 -3.51 9.67 22.27 0.22 -3.30 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.77 7.75 -2.39 -0.02 1.75 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.33 13.81 6.35 -89.70 -0.57 13.24 16 33 H -0.02 -1.15 7.43 -2.39 -0.02 -1.17 16 34 H 0.02 1.09 7.11 -2.39 -0.02 1.07 16 35 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.12 3.56 6.53 -2.91 -0.02 3.55 16 37 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 38 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.13 3.08 8.04 -2.91 -0.02 3.06 16 Total: -1.00 -66.73 325.71 3.09 -63.64 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.36 Total: 24.99 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 3.38 Total: -45.64 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.54 Total: -90.21 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.22 kcal Total: -66.73 3.09 -63.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.491 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds