Wall clock time and date at job start Mon Mar 30 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47563 * 305.00337 * 5 4 3 7 7 N 1.46910 * 109.47127 * 65.00091 * 5 4 3 8 8 C 1.46900 * 111.00108 * 205.00462 * 7 5 4 9 9 C 1.50692 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.08007 * 120.00098 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00372 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99553 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00172 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47300 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47176 * 119.99628 * 13 11 9 16 16 H 1.48504 * 109.47134 * 239.99507 * 13 11 9 17 17 C 1.50700 * 109.47798 * 185.00026 * 5 4 3 18 18 C 1.38243 * 119.99881 * 279.73067 * 17 5 4 19 19 C 1.38236 * 119.99546 * 179.78181 * 18 17 5 20 20 C 1.38230 * 120.00068 * 0.44148 * 19 18 17 21 21 C 1.38228 * 120.00363 * 359.81337 * 20 19 18 22 22 C 1.38231 * 119.99932 * 359.97297 * 21 20 19 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 32 32 H 1.00903 * 110.99433 * 328.95625 * 7 5 4 33 33 H 1.09001 * 109.46729 * 299.99669 * 8 7 5 34 34 H 1.08996 * 109.47288 * 59.99365 * 8 7 5 35 35 H 0.97005 * 120.00092 * 180.02562 * 12 11 9 36 36 H 1.07998 * 119.99681 * 359.97438 * 18 17 5 37 37 H 1.08001 * 119.99400 * 180.27071 * 19 18 17 38 38 H 1.08007 * 119.99792 * 179.83387 * 20 19 18 39 39 H 1.07998 * 120.00222 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.00023 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6450 3.4246 -0.8413 7 7 3.6919 3.5410 1.2559 8 6 3.6129 4.9981 1.0862 9 6 3.2126 5.6349 2.3919 10 1 3.0342 5.0189 3.2609 11 6 3.0740 7.0041 2.4774 12 7 3.2918 7.7542 1.4193 13 14 2.5771 7.7934 4.0958 14 1 2.3923 6.7387 5.1248 15 1 3.6397 8.7332 4.5350 16 1 1.3039 8.5357 3.9141 17 6 5.5818 2.8870 -0.1245 18 6 6.3679 2.6506 0.9879 19 6 7.7454 2.6480 0.8728 20 6 8.3370 2.8908 -0.3527 21 6 7.5511 3.1323 -1.4639 22 6 6.1735 3.1305 -1.3498 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.9337 0.9286 0.8891 31 1 3.9330 0.9289 -0.8908 32 1 2.8204 3.1697 1.6035 33 1 4.5857 5.3811 0.7779 34 1 2.8708 5.2354 0.3240 35 1 3.1947 8.7175 1.4795 36 1 5.9056 2.4650 1.9461 37 1 8.3594 2.4591 1.7409 38 1 9.4134 2.8914 -0.4421 39 1 8.0134 3.3215 -2.4215 40 1 5.5595 3.3188 -2.2181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:57 Heat of formation + Delta-G solvation = -2.975471 kcal Electronic energy + Delta-G solvation = -17701.206872 eV Core-core repulsion = 15093.512409 eV Total energy + Delta-G solvation = -2607.694462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.08271 -36.72005 -34.47668 -32.76588 -30.74717 -30.37444 -29.72275 -26.58056 -24.81456 -22.48010 -22.11663 -21.56451 -20.82477 -19.65626 -16.49663 -16.25708 -15.55906 -15.04652 -14.74084 -14.56272 -14.07979 -13.82121 -13.46749 -13.00610 -12.87846 -12.54564 -12.39664 -12.22114 -12.00049 -11.62072 -11.25933 -11.13307 -11.00624 -10.88681 -10.74827 -10.56282 -10.50089 -10.28063 -10.12519 -9.87778 -9.12194 -8.47701 -8.45399 -8.19051 -7.30883 -6.00860 -4.02618 1.81232 1.88880 3.31734 3.39007 3.43761 4.24223 4.44524 4.84780 5.03060 5.13298 5.17252 5.31662 5.35220 5.40029 5.40761 5.55869 5.57568 5.63704 5.77657 5.85299 5.94876 6.02768 6.05785 6.08408 6.12756 6.17462 6.31833 6.44697 6.46441 6.57181 6.59636 6.88206 6.96518 7.15377 7.35625 7.44943 7.49266 7.81353 8.16258 8.43339 8.63769 9.07035 9.62136 11.10287 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.007554 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.313597 B = 3705.588291 C = 5556.008118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.112 4.112 5 C 0.120 3.880 6 H 0.043 0.957 7 N -0.682 5.682 8 C 0.197 3.803 9 C -0.512 4.512 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.058 4.058 18 C -0.080 4.080 19 C -0.130 4.130 20 C -0.132 4.132 21 C -0.129 4.129 22 C -0.121 4.121 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.331 0.669 33 H 0.028 0.972 34 H -0.015 1.015 35 H 0.260 0.740 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -13.842 -4.842 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.162 4.162 4 C -0.150 4.150 5 C 0.010 3.990 6 H 0.061 0.939 7 N -0.314 5.314 8 C 0.070 3.930 9 C -0.551 4.551 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.059 4.059 18 C -0.099 4.099 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.147 4.147 22 C -0.140 4.140 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.046 0.954 34 H 0.003 0.997 35 H 0.070 0.930 36 H 0.148 0.852 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.917 -13.633 -4.644 14.694 hybrid contribution -0.974 0.887 0.235 1.338 sum 1.943 -12.745 -4.409 13.626 Atomic orbital electron populations 1.21783 0.96151 1.01128 1.01981 1.21499 0.95604 0.97094 1.01672 1.21688 0.95552 0.96493 1.02480 1.21720 0.94980 0.96144 1.02173 1.20407 0.90843 0.94032 0.93757 0.93925 1.60695 1.37453 1.07894 1.25384 1.19561 0.96197 0.81032 0.96216 1.21214 1.45757 0.91638 0.96459 0.91988 1.24984 0.95639 0.97342 0.96608 1.69979 1.49816 1.05074 1.28788 0.86463 0.78014 0.79298 0.83757 1.19671 1.21024 1.21136 1.19945 0.95675 0.97339 0.92903 1.21065 0.92648 0.97168 0.98974 1.21145 0.95223 1.01269 0.97165 1.21007 0.99126 1.01603 0.93317 1.20963 0.93802 1.01619 0.98304 1.21006 0.94734 1.00884 0.97327 0.93163 0.92575 0.92885 0.92423 0.92086 0.92210 0.91312 0.91231 0.92067 0.84959 0.95393 0.99739 0.93026 0.85188 0.86714 0.86968 0.86849 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.33 5.93 -26.73 -0.16 -1.49 16 3 C -0.12 -1.64 5.04 -26.73 -0.13 -1.77 16 4 C -0.11 -1.59 4.78 -26.74 -0.13 -1.72 16 5 C 0.12 2.14 2.25 -68.86 -0.15 1.98 16 6 H 0.04 0.81 7.66 -51.93 -0.40 0.42 16 7 N -0.68 -14.32 5.53 -109.22 -0.60 -14.92 16 8 C 0.20 5.19 5.23 -4.98 -0.03 5.16 16 9 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 10 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 13 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 C -0.06 -1.03 4.71 -104.62 -0.49 -1.52 16 18 C -0.08 -1.41 9.33 -39.58 -0.37 -1.78 16 19 C -0.13 -2.02 10.05 -39.59 -0.40 -2.42 16 20 C -0.13 -1.93 10.05 -39.59 -0.40 -2.32 16 21 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 16 22 C -0.12 -1.98 9.67 -39.58 -0.38 -2.37 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.98 6.43 -51.93 -0.33 0.65 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.33 6.61 6.46 -39.29 -0.25 6.36 16 33 H 0.03 0.82 8.00 -51.93 -0.42 0.40 16 34 H -0.02 -0.43 8.05 -51.93 -0.42 -0.84 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.13 2.33 7.71 -52.49 -0.40 1.92 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.70 8.04 -52.49 -0.42 1.27 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -30.30 329.23 -9.86 -40.16 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.84 Total: 4.52 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.09 Total: -25.14 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.13 Total: -41.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.30 -9.86 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.185 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds