Wall clock time and date at job start Mon Mar 30 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47563 * 305.00337 * 5 4 3 7 7 N 1.46910 * 109.47127 * 65.00091 * 5 4 3 8 8 C 1.46900 * 111.00108 * 205.00462 * 7 5 4 9 9 C 1.50692 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.08007 * 120.00098 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00372 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99553 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00172 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47300 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47176 * 119.99628 * 13 11 9 16 16 H 1.48504 * 109.47134 * 239.99507 * 13 11 9 17 17 C 1.50700 * 109.47798 * 185.00026 * 5 4 3 18 18 C 1.38243 * 119.99881 * 279.73067 * 17 5 4 19 19 C 1.38236 * 119.99546 * 179.78181 * 18 17 5 20 20 C 1.38230 * 120.00068 * 0.44148 * 19 18 17 21 21 C 1.38228 * 120.00363 * 359.81337 * 20 19 18 22 22 C 1.38231 * 119.99932 * 359.97297 * 21 20 19 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 31 31 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 32 32 H 1.00903 * 110.99433 * 328.95625 * 7 5 4 33 33 H 1.09001 * 109.46729 * 299.99669 * 8 7 5 34 34 H 1.08996 * 109.47288 * 59.99365 * 8 7 5 35 35 H 0.97005 * 120.00092 * 180.02562 * 12 11 9 36 36 H 1.07998 * 119.99681 * 359.97438 * 18 17 5 37 37 H 1.08001 * 119.99400 * 180.27071 * 19 18 17 38 38 H 1.08007 * 119.99792 * 179.83387 * 20 19 18 39 39 H 1.07998 * 120.00222 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.00023 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6450 3.4246 -0.8413 7 7 3.6919 3.5410 1.2559 8 6 3.6129 4.9981 1.0862 9 6 3.2126 5.6349 2.3919 10 1 3.0342 5.0189 3.2609 11 6 3.0740 7.0041 2.4774 12 7 3.2918 7.7542 1.4193 13 14 2.5771 7.7934 4.0958 14 1 2.3923 6.7387 5.1248 15 1 3.6397 8.7332 4.5350 16 1 1.3039 8.5357 3.9141 17 6 5.5818 2.8870 -0.1245 18 6 6.3679 2.6506 0.9879 19 6 7.7454 2.6480 0.8728 20 6 8.3370 2.8908 -0.3527 21 6 7.5511 3.1323 -1.4639 22 6 6.1735 3.1305 -1.3498 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.9337 0.9286 0.8891 31 1 3.9330 0.9289 -0.8908 32 1 2.8204 3.1697 1.6035 33 1 4.5857 5.3811 0.7779 34 1 2.8708 5.2354 0.3240 35 1 3.1947 8.7175 1.4795 36 1 5.9056 2.4650 1.9461 37 1 8.3594 2.4591 1.7409 38 1 9.4134 2.8914 -0.4421 39 1 8.0134 3.3215 -2.4215 40 1 5.5595 3.3188 -2.2181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:57 Heat of formation + Delta-G solvation = -19.258712 kcal Electronic energy + Delta-G solvation = -17701.912966 eV Core-core repulsion = 15093.512409 eV Total energy + Delta-G solvation = -2608.400556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.38647 -38.05311 -35.90242 -34.65220 -32.38617 -31.64236 -30.85950 -28.40800 -26.27831 -23.87809 -23.47709 -23.22235 -21.85193 -21.04665 -18.55730 -17.59184 -16.91763 -16.62181 -16.26400 -15.97012 -15.60352 -14.90349 -14.78082 -14.45967 -14.15693 -14.05118 -13.82200 -13.55780 -13.43521 -13.25582 -12.89130 -12.69834 -12.36449 -12.21427 -12.05538 -11.94990 -11.85791 -11.74991 -11.42083 -11.32470 -11.19002 -10.68068 -9.70146 -9.47138 -9.13731 -8.22979 -6.34164 0.56269 0.63737 1.39350 1.40262 1.54075 2.38892 2.98695 3.10407 3.51258 3.82486 4.01526 4.05881 4.15638 4.24662 4.29590 4.38998 4.46631 4.52944 4.58032 4.75615 4.82150 4.85382 4.92482 5.02671 5.06373 5.11684 5.17613 5.22552 5.28907 5.30632 5.34426 5.42202 5.50611 5.60299 5.66197 5.72101 5.87582 6.05353 6.24779 6.47739 6.74246 6.91223 7.36975 8.89005 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.007554 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.313597 B = 3705.588291 C = 5556.008118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.122 4.122 4 C -0.099 4.099 5 C 0.121 3.879 6 H 0.024 0.976 7 N -0.675 5.675 8 C 0.218 3.782 9 C -0.532 4.532 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.972 3.028 14 H -0.261 1.261 15 H -0.279 1.279 16 H -0.277 1.277 17 C -0.082 4.082 18 C -0.103 4.103 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.138 4.138 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.337 0.663 33 H -0.008 1.008 34 H -0.045 1.045 35 H 0.264 0.736 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -14.857 -4.364 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.160 4.160 4 C -0.137 4.137 5 C 0.011 3.989 6 H 0.042 0.958 7 N -0.307 5.307 8 C 0.090 3.910 9 C -0.570 4.570 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.796 3.204 14 H -0.185 1.185 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.082 4.082 18 C -0.121 4.121 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.157 4.157 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.010 0.990 34 H -0.027 1.027 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.561 -14.678 -4.169 15.669 hybrid contribution -1.109 1.183 0.016 1.622 sum 2.452 -13.494 -4.153 14.330 Atomic orbital electron populations 1.21785 0.95536 1.02109 1.01623 1.21458 0.96118 0.95237 1.02503 1.21662 0.94803 0.98141 1.01383 1.21628 0.95528 0.93548 1.03017 1.20480 0.91549 0.95651 0.91253 0.95791 1.60554 1.37648 1.05053 1.27485 1.19102 0.93028 0.84119 0.94702 1.21569 1.45983 0.92334 0.97113 0.91673 1.25963 0.95304 0.97942 1.00568 1.70114 1.50631 1.05547 1.31258 0.85294 0.77796 0.78309 0.78959 1.18492 1.20494 1.20249 1.20029 0.95390 0.98886 0.93924 1.21095 0.93904 0.98777 0.98363 1.21451 0.94540 1.00565 0.98690 1.21427 1.00893 1.00039 0.92554 1.21354 0.93121 1.00279 0.99892 1.21227 0.95996 1.01333 0.97103 0.91502 0.93230 0.93009 0.91251 0.91542 0.92874 0.92864 0.90955 0.90456 0.84299 0.98996 1.02704 0.92706 0.86455 0.84516 0.83633 0.83928 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.91 71.98 0.71 -2.23 16 2 C -0.12 -2.38 5.93 30.59 0.18 -2.20 16 3 C -0.12 -3.21 5.04 30.59 0.15 -3.06 16 4 C -0.10 -2.81 4.78 30.59 0.15 -2.67 16 5 C 0.12 4.46 2.25 44.16 0.10 4.56 16 6 H 0.02 0.97 7.66 -2.39 -0.02 0.95 16 7 N -0.67 -29.52 5.53 -499.47 -2.76 -32.28 16 8 C 0.22 12.09 5.23 85.55 0.45 12.54 16 9 C -0.53 -30.96 9.32 25.60 0.24 -30.72 16 10 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 11 C 0.00 0.01 5.46 84.66 0.46 0.47 16 12 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 13 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 14 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 C -0.08 -2.96 4.71 -19.86 -0.09 -3.05 16 18 C -0.10 -3.65 9.33 22.27 0.21 -3.44 16 19 C -0.13 -4.02 10.05 22.27 0.22 -3.79 16 20 C -0.13 -3.51 10.05 22.27 0.22 -3.28 16 21 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 22 C -0.14 -4.51 9.67 22.27 0.22 -4.30 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.55 6.43 -2.39 -0.02 1.54 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.34 13.93 6.46 -89.69 -0.58 13.35 16 33 H -0.01 -0.50 8.00 -2.39 -0.02 -0.52 16 34 H -0.04 -2.68 8.05 -2.39 -0.02 -2.70 16 35 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.12 4.33 7.71 -2.91 -0.02 4.31 16 37 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.12 3.63 8.04 -2.91 -0.02 3.60 16 Total: -1.00 -66.37 329.23 3.40 -62.97 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.40 Total: 24.39 kcal Atomic # 6 Polarization: -47.97 SS G_CDS: 3.44 Total: -44.53 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -2.48 Total: -89.93 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -66.37 3.40 -62.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.715 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds