Wall clock time and date at job start Mon Mar 30 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 C 1.53006 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46885 * 179.97438 * 4 3 2 6 6 C 1.38283 * 119.92563 * 89.99720 * 5 4 3 7 7 C 1.38101 * 120.07597 * 180.02562 * 6 5 4 8 8 C 1.38912 * 119.92565 * 0.02562 * 7 6 5 9 9 N 1.39673 * 120.07315 * 179.97438 * 8 7 6 10 10 C 1.46506 * 119.99605 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47035 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47300 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 89.99790 * 16 14 12 18 18 H 1.48499 * 109.47134 * 210.00310 * 16 14 12 19 19 H 1.48507 * 109.46904 * 330.00133 * 16 14 12 20 20 C 1.38914 * 119.84917 * 0.25534 * 8 7 6 21 21 C 1.38106 * 119.92380 * 359.48549 * 20 8 7 22 22 H 1.08994 * 109.47378 * 300.00626 * 1 2 3 23 23 H 1.09002 * 109.46591 * 60.00326 * 1 2 3 24 24 H 1.08997 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47819 * 239.99213 * 2 1 3 26 26 H 1.09007 * 109.47029 * 119.99830 * 2 1 3 27 27 H 1.08994 * 109.47452 * 59.99419 * 3 2 1 28 28 H 1.09004 * 109.46566 * 299.99235 * 3 2 1 29 29 H 1.08994 * 109.47437 * 59.99413 * 4 3 2 30 30 H 1.09002 * 109.46656 * 299.99639 * 4 3 2 31 31 H 1.08009 * 119.96012 * 0.02562 * 6 5 4 32 32 H 1.08005 * 120.03673 * 179.97438 * 7 6 5 33 33 H 0.96999 * 120.00315 * 0.02562 * 9 8 7 34 34 H 1.09004 * 109.47073 * 299.99891 * 10 9 8 35 35 H 1.09000 * 109.47212 * 59.99974 * 10 9 8 36 36 H 1.09004 * 109.46930 * 299.99770 * 11 10 9 37 37 H 1.09004 * 109.47059 * 59.99372 * 11 10 9 38 38 H 0.97000 * 120.00540 * 179.97438 * 15 14 12 39 39 H 1.07998 * 120.03713 * 179.72784 * 20 8 7 40 40 H 1.07994 * 119.96460 * 180.25714 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3018 3.5144 1.1982 7 6 4.7616 4.8167 1.2012 8 6 4.9931 5.4726 -0.0012 9 7 5.4577 6.7898 -0.0017 10 6 5.7008 7.4802 -1.2708 11 6 6.2018 8.8988 -0.9918 12 6 6.4525 9.6088 -2.2972 13 1 6.2729 9.0991 -3.2323 14 6 6.9112 10.9090 -2.2978 15 7 7.1304 11.5294 -1.1592 16 14 7.2213 11.7893 -3.9159 17 1 5.9831 12.4883 -4.3444 18 1 8.3132 12.7801 -3.7391 19 1 7.6141 10.7992 -4.9508 20 6 4.7561 4.8175 -1.2030 21 6 4.3014 3.5135 -1.1988 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9562 -0.8901 29 1 3.9338 0.9284 -0.8890 30 1 3.9329 0.9288 0.8909 31 1 4.1211 3.0040 2.1327 32 1 4.9401 5.3248 2.1374 33 1 5.6193 7.2475 0.8381 34 1 6.4524 6.9357 -1.8425 35 1 4.7737 7.5277 -1.8420 36 1 5.4506 9.4435 -0.4200 37 1 7.1290 8.8509 -0.4207 38 1 7.4534 12.4441 -1.1595 39 1 4.9309 5.3261 -2.1395 40 1 4.1209 3.0022 -2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037249602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:39 Heat of formation + Delta-G solvation = -15.078608 kcal Electronic energy + Delta-G solvation = -16704.898552 eV Core-core repulsion = 14096.679258 eV Total energy + Delta-G solvation = -2608.219294 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.27215 -36.49028 -35.05114 -33.14607 -31.51118 -30.58789 -29.51743 -27.12019 -24.74730 -23.40320 -22.61717 -21.28349 -20.74731 -20.19011 -17.11628 -16.19658 -15.79659 -15.30321 -14.87681 -14.49100 -14.23104 -14.04040 -13.68860 -13.59953 -13.09647 -12.76416 -12.72835 -12.49126 -12.21630 -11.71901 -11.40695 -11.33162 -11.22845 -11.04971 -10.74433 -10.66550 -10.62785 -10.46097 -10.41373 -9.60368 -9.32404 -9.30956 -8.62010 -8.45225 -6.85873 -6.11074 -4.14507 1.75401 1.93195 3.27133 3.33394 3.36623 4.05168 4.16359 4.41546 4.72671 4.78459 4.96933 5.08174 5.20312 5.25748 5.30628 5.35743 5.60385 5.60977 5.64378 5.67267 5.76281 5.84861 5.95037 5.98308 6.05916 6.17323 6.23667 6.27831 6.28551 6.38714 6.67168 6.72974 6.75453 6.99295 7.22074 7.47455 7.61405 7.79186 7.95523 8.18432 8.35853 8.91436 9.50328 11.00582 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046473 B = 0.003098 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.360053 B = 9035.265555 C = 9353.703288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.067 4.067 5 C -0.162 4.162 6 C -0.068 4.068 7 C -0.207 4.207 8 C 0.225 3.775 9 N -0.741 5.741 10 C 0.126 3.874 11 C 0.013 3.987 12 C -0.523 4.523 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.200 4.200 21 C -0.067 4.067 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.397 0.603 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.121 0.879 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 -19.742 3.560 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.104 4.104 5 C -0.164 4.164 6 C -0.087 4.087 7 C -0.230 4.230 8 C 0.118 3.882 9 N -0.366 5.366 10 C 0.003 3.997 11 C -0.024 4.024 12 C -0.561 4.561 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.223 4.223 21 C -0.086 4.086 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.231 0.769 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.602 -19.445 3.421 21.536 hybrid contribution 0.293 0.894 -0.498 1.064 sum -8.309 -18.551 2.923 20.536 Atomic orbital electron populations 1.21779 0.96112 1.01297 1.01873 1.21564 0.95690 0.97287 1.01781 1.21637 0.95195 0.96071 1.02345 1.20408 0.94920 0.93226 1.01875 1.19450 1.07224 0.96615 0.93122 1.20622 0.97334 0.93782 0.96985 1.20548 1.09975 0.96273 0.96177 1.18006 0.91219 0.85251 0.93701 1.45246 1.71136 1.10605 1.09642 1.21674 0.98888 0.95238 0.83949 1.19279 0.96668 0.88552 0.97936 1.21039 1.44840 0.97953 0.92289 0.92350 1.25011 0.95301 0.97495 0.96541 1.69958 1.45545 1.12410 1.25287 0.86514 0.77963 0.79476 0.83604 1.20540 1.21133 1.19750 1.20683 1.08875 0.95961 0.96815 1.20693 0.97037 0.93821 0.97023 0.92802 0.92759 0.93036 0.92177 0.92217 0.92033 0.91969 0.91843 0.91892 0.86955 0.86711 0.76934 0.93376 0.93381 0.96027 0.96015 0.92814 0.86119 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.11 -1.07 5.20 -26.73 -0.14 -1.20 16 4 C -0.07 -0.67 5.34 -27.88 -0.15 -0.82 16 5 C -0.16 -2.08 5.14 -104.59 -0.54 -2.62 16 6 C -0.07 -0.91 9.69 -39.62 -0.38 -1.29 16 7 C -0.21 -3.06 9.90 -39.38 -0.39 -3.45 16 8 C 0.23 3.78 6.65 -83.79 -0.56 3.22 16 9 N -0.74 -13.44 5.73 -58.63 -0.34 -13.78 16 10 C 0.13 2.60 4.85 -4.04 -0.02 2.58 16 11 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 12 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.20 -3.22 9.31 -39.38 -0.37 -3.59 16 21 C -0.07 -0.93 9.69 -39.61 -0.38 -1.31 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.40 6.83 8.49 -40.82 -0.35 6.48 16 34 H 0.05 1.00 7.96 -51.93 -0.41 0.58 16 35 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 1.96 6.73 -52.49 -0.35 1.61 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -28.95 331.94 -9.87 -38.82 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.98 Total: 2.69 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.27 Total: -23.41 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.40 Total: -39.39 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.95 -9.87 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037249602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.737 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds