Wall clock time and date at job start Mon Mar 30 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 C 1.53006 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46885 * 179.97438 * 4 3 2 6 6 C 1.38283 * 119.92563 * 89.99720 * 5 4 3 7 7 C 1.38101 * 120.07597 * 180.02562 * 6 5 4 8 8 C 1.38912 * 119.92565 * 0.02562 * 7 6 5 9 9 N 1.39673 * 120.07315 * 179.97438 * 8 7 6 10 10 C 1.46506 * 119.99605 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47035 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47300 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 89.99790 * 16 14 12 18 18 H 1.48499 * 109.47134 * 210.00310 * 16 14 12 19 19 H 1.48507 * 109.46904 * 330.00133 * 16 14 12 20 20 C 1.38914 * 119.84917 * 0.25534 * 8 7 6 21 21 C 1.38106 * 119.92380 * 359.48549 * 20 8 7 22 22 H 1.08994 * 109.47378 * 300.00626 * 1 2 3 23 23 H 1.09002 * 109.46591 * 60.00326 * 1 2 3 24 24 H 1.08997 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47819 * 239.99213 * 2 1 3 26 26 H 1.09007 * 109.47029 * 119.99830 * 2 1 3 27 27 H 1.08994 * 109.47452 * 59.99419 * 3 2 1 28 28 H 1.09004 * 109.46566 * 299.99235 * 3 2 1 29 29 H 1.08994 * 109.47437 * 59.99413 * 4 3 2 30 30 H 1.09002 * 109.46656 * 299.99639 * 4 3 2 31 31 H 1.08009 * 119.96012 * 0.02562 * 6 5 4 32 32 H 1.08005 * 120.03673 * 179.97438 * 7 6 5 33 33 H 0.96999 * 120.00315 * 0.02562 * 9 8 7 34 34 H 1.09004 * 109.47073 * 299.99891 * 10 9 8 35 35 H 1.09000 * 109.47212 * 59.99974 * 10 9 8 36 36 H 1.09004 * 109.46930 * 299.99770 * 11 10 9 37 37 H 1.09004 * 109.47059 * 59.99372 * 11 10 9 38 38 H 0.97000 * 120.00540 * 179.97438 * 15 14 12 39 39 H 1.07998 * 120.03713 * 179.72784 * 20 8 7 40 40 H 1.07994 * 119.96460 * 180.25714 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3018 3.5144 1.1982 7 6 4.7616 4.8167 1.2012 8 6 4.9931 5.4726 -0.0012 9 7 5.4577 6.7898 -0.0017 10 6 5.7008 7.4802 -1.2708 11 6 6.2018 8.8988 -0.9918 12 6 6.4525 9.6088 -2.2972 13 1 6.2729 9.0991 -3.2323 14 6 6.9112 10.9090 -2.2978 15 7 7.1304 11.5294 -1.1592 16 14 7.2213 11.7893 -3.9159 17 1 5.9831 12.4883 -4.3444 18 1 8.3132 12.7801 -3.7391 19 1 7.6141 10.7992 -4.9508 20 6 4.7561 4.8175 -1.2030 21 6 4.3014 3.5135 -1.1988 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9562 -0.8901 29 1 3.9338 0.9284 -0.8890 30 1 3.9329 0.9288 0.8909 31 1 4.1211 3.0040 2.1327 32 1 4.9401 5.3248 2.1374 33 1 5.6193 7.2475 0.8381 34 1 6.4524 6.9357 -1.8425 35 1 4.7737 7.5277 -1.8420 36 1 5.4506 9.4435 -0.4200 37 1 7.1290 8.8509 -0.4207 38 1 7.4534 12.4441 -1.1595 39 1 4.9309 5.3261 -2.1395 40 1 4.1209 3.0022 -2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037249602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:38 Heat of formation + Delta-G solvation = -29.135705 kcal Electronic energy + Delta-G solvation = -16705.508113 eV Core-core repulsion = 14096.679258 eV Total energy + Delta-G solvation = -2608.828855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42686 -37.66153 -36.18276 -34.98107 -32.80131 -31.71211 -30.99417 -28.32484 -26.43195 -24.37230 -24.04980 -22.36312 -21.91499 -21.35634 -18.79452 -17.91502 -16.89693 -16.47513 -16.22316 -15.93499 -15.82832 -14.87426 -14.82273 -14.80622 -14.21358 -14.20323 -13.83169 -13.60266 -13.39518 -13.20618 -12.97572 -12.62537 -12.47670 -12.24151 -12.10468 -11.93230 -11.68409 -11.55866 -11.49413 -11.36360 -11.29625 -10.71695 -10.53468 -9.75312 -8.26254 -8.15512 -6.37789 0.61388 0.78183 1.40002 1.41160 1.52447 2.35703 2.69915 3.02780 3.08360 3.97030 4.00976 4.18747 4.20375 4.30919 4.40225 4.46855 4.50759 4.52243 4.65647 4.76068 4.82943 4.87816 4.92823 4.99762 5.07397 5.08485 5.22520 5.25109 5.36408 5.37812 5.45008 5.53855 5.55859 5.57810 5.61900 5.72034 5.91938 6.07980 6.14177 6.52245 6.76690 6.93367 7.32136 8.86135 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046473 B = 0.003098 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.360053 B = 9035.265555 C = 9353.703288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.064 4.064 5 C -0.153 4.153 6 C -0.071 4.071 7 C -0.210 4.210 8 C 0.197 3.803 9 N -0.748 5.748 10 C 0.149 3.851 11 C 0.021 3.979 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.969 3.031 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.262 1.262 20 C -0.217 4.217 21 C -0.073 4.073 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.398 0.602 34 H 0.046 0.954 35 H 0.046 0.954 36 H -0.001 1.001 37 H -0.001 1.001 38 H 0.265 0.735 39 H 0.111 0.889 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 -21.681 3.082 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.102 4.102 5 C -0.155 4.155 6 C -0.089 4.089 7 C -0.232 4.232 8 C 0.093 3.907 9 N -0.377 5.377 10 C 0.025 3.975 11 C -0.016 4.016 12 C -0.583 4.583 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.570 5.570 16 Si 0.793 3.207 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.240 4.240 21 C -0.091 4.091 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.232 0.768 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.245 -21.430 2.949 23.525 hybrid contribution 0.437 1.371 -0.285 1.467 sum -8.809 -20.058 2.665 22.069 Atomic orbital electron populations 1.21791 0.95892 1.01869 1.01659 1.21538 0.95881 0.96188 1.02407 1.21588 0.94567 0.97076 1.01690 1.20460 0.95317 0.91304 1.03089 1.19860 1.05204 0.97892 0.92559 1.20984 0.96347 0.93164 0.98427 1.20778 1.09538 0.97007 0.95902 1.18230 0.92869 0.84724 0.94897 1.44989 1.72732 1.11454 1.08476 1.21170 0.98350 0.92796 0.85156 1.19106 0.94981 0.90945 0.96596 1.21489 1.44820 0.98646 0.93345 0.91754 1.25974 0.94900 0.98404 1.00373 1.70085 1.46369 1.12881 1.27695 0.85384 0.78045 0.78230 0.79025 1.19686 1.20681 1.18632 1.20799 1.09831 0.97091 0.96307 1.20959 0.96532 0.93066 0.98547 0.92936 0.93107 0.92103 0.91681 0.91455 0.92518 0.92867 0.90890 0.90480 0.84198 0.85643 0.76785 0.93625 0.93622 0.98266 0.98244 0.92592 0.87081 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.11 -1.79 5.20 30.60 0.16 -1.63 16 4 C -0.06 -1.09 5.34 29.85 0.16 -0.93 16 5 C -0.15 -3.57 5.14 -19.84 -0.10 -3.68 16 6 C -0.07 -1.71 9.69 22.25 0.22 -1.49 16 7 C -0.21 -5.99 9.90 22.40 0.22 -5.77 16 8 C 0.20 6.62 6.65 38.22 0.25 6.88 16 9 N -0.75 -27.93 5.73 -339.39 -1.95 -29.88 16 10 C 0.15 6.38 4.85 86.38 0.42 6.80 16 11 C 0.02 1.11 5.09 29.85 0.15 1.26 16 12 C -0.54 -30.68 9.11 25.60 0.23 -30.44 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 16 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 20 C -0.22 -6.97 9.31 22.40 0.21 -6.76 16 21 C -0.07 -1.91 9.69 22.25 0.22 -1.69 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 30 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.40 14.25 8.49 -92.71 -0.79 13.47 16 34 H 0.05 1.94 7.96 -2.38 -0.02 1.92 16 35 H 0.05 1.94 7.94 -2.39 -0.02 1.92 16 36 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 37 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.19 16 39 H 0.11 3.68 6.73 -2.91 -0.02 3.66 16 40 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -62.17 331.94 4.06 -58.11 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.20 Total: 21.16 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 3.49 Total: -39.49 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.66 Total: -85.57 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -62.17 4.06 -58.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037249602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.972 kcal (2) G-P(sol) polarization free energy of solvation -62.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds