Wall clock time and date at job start Mon Mar 30 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47310 * 2 1 4 4 C 1.50698 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.38288 * 119.92407 * 90.00356 * 4 3 2 6 6 C 1.38111 * 120.07382 * 179.69843 * 5 4 3 7 7 C 1.38906 * 119.92343 * 0.28047 * 6 5 4 8 8 N 1.39676 * 120.07135 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99636 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47705 * 324.99549 * 9 8 7 11 11 C 1.50708 * 109.47001 * 204.99486 * 9 8 7 12 12 H 1.08002 * 119.99779 * 0.02562 * 11 9 8 13 13 C 1.37878 * 120.00231 * 179.97438 * 11 9 8 14 14 N 1.31507 * 120.00064 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 119.99675 * 0.02562 * 13 11 9 16 16 H 1.48498 * 109.47379 * 89.99788 * 15 13 11 17 17 H 1.48507 * 109.47040 * 209.99682 * 15 13 11 18 18 H 1.48499 * 109.47297 * 329.99458 * 15 13 11 19 19 C 1.53004 * 109.47294 * 85.00037 * 9 8 7 20 20 C 1.52996 * 109.46775 * 294.99833 * 19 9 8 21 21 C 1.38908 * 119.85606 * 359.97438 * 7 6 5 22 22 C 1.38112 * 119.92096 * 0.02562 * 21 7 6 23 23 H 1.09002 * 109.47433 * 59.99395 * 1 2 3 24 24 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47324 * 299.99866 * 1 2 3 26 26 H 1.09008 * 109.46939 * 240.00370 * 2 1 3 27 27 H 1.08993 * 109.47308 * 120.00847 * 2 1 3 28 28 H 1.09001 * 109.47106 * 60.00544 * 3 2 1 29 29 H 1.09003 * 109.47500 * 300.00111 * 3 2 1 30 30 H 1.08002 * 119.96530 * 359.97438 * 5 4 3 31 31 H 1.07999 * 120.03725 * 180.25498 * 6 5 4 32 32 H 0.96995 * 120.00298 * 359.97438 * 8 7 6 33 33 H 0.97006 * 120.00013 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47149 * 54.99674 * 19 9 8 35 35 H 1.08999 * 109.47133 * 174.99906 * 19 9 8 36 36 H 1.08999 * 109.47153 * 299.99839 * 20 19 9 37 37 H 1.09000 * 109.47710 * 59.99907 * 20 19 9 38 38 H 1.09003 * 109.47344 * 180.02562 * 20 19 9 39 39 H 1.07998 * 120.04186 * 180.02562 * 21 7 6 40 40 H 1.08002 * 119.96339 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2363 1.4426 -1.1994 6 6 5.6174 1.4488 -1.2036 7 6 6.3140 1.4489 -0.0019 8 7 7.7107 1.4558 -0.0025 9 6 8.4437 1.4565 1.2659 10 1 7.8939 2.0416 2.0031 11 6 9.8071 2.0640 1.0579 12 1 10.0983 2.4149 0.0788 13 6 10.6824 2.1729 2.1176 14 7 11.8720 2.7034 1.9361 15 14 10.1786 1.5666 3.8111 16 1 10.5639 0.1404 3.9613 17 1 10.8632 2.3765 4.8507 18 1 8.7080 1.7012 3.9678 19 6 8.5971 0.0191 1.7672 20 6 7.2181 -0.5558 2.0969 21 6 5.6185 1.4434 1.2005 22 6 4.2374 1.4372 1.1975 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8898 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.6941 1.4424 -2.1335 31 1 6.1551 1.4531 -2.1402 32 1 8.1953 1.4600 -0.8427 33 1 12.4879 2.7797 2.6816 34 1 9.0680 -0.5873 0.9934 35 1 9.2178 0.0110 2.6631 36 1 6.7473 0.0505 2.8707 37 1 6.5973 -0.5478 1.2011 38 1 7.3273 -1.5798 2.4545 39 1 6.1570 1.4439 2.1367 40 1 3.6959 1.4333 2.1320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037287413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:19 Heat of formation + Delta-G solvation = -4.470505 kcal Electronic energy + Delta-G solvation = -17931.161690 eV Core-core repulsion = 15323.402398 eV Total energy + Delta-G solvation = -2607.759292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62508 -38.13927 -35.74817 -34.38165 -33.31339 -31.56070 -30.86161 -28.94314 -26.23908 -24.43610 -23.96642 -22.82666 -21.84324 -20.90530 -19.34178 -17.64343 -17.49383 -16.48040 -16.09660 -15.75027 -15.52031 -14.96060 -14.78807 -14.60539 -14.25910 -14.03671 -13.92243 -13.68099 -13.53073 -12.90079 -12.89394 -12.70751 -12.68302 -12.29623 -12.05837 -11.91139 -11.70965 -11.59903 -11.38015 -11.24570 -11.08148 -10.90433 -10.47213 -9.63158 -8.38710 -7.96756 -6.44813 0.69367 0.87871 1.27934 1.33166 1.43196 2.25152 2.84318 2.96463 3.11490 4.03775 4.09429 4.20128 4.28049 4.32697 4.35087 4.40419 4.43163 4.66284 4.67991 4.75851 4.77559 4.92369 4.98125 5.06431 5.07735 5.13134 5.13850 5.25192 5.27680 5.33658 5.39011 5.48203 5.52965 5.56410 5.65845 5.70953 5.98588 5.98939 6.28378 6.55225 6.76198 7.10662 7.25936 8.77644 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039575 B = 0.005091 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.354310 B = 5498.861687 C = 5837.646563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.064 4.064 4 C -0.158 4.158 5 C -0.071 4.071 6 C -0.217 4.217 7 C 0.206 3.794 8 N -0.729 5.729 9 C 0.258 3.742 10 H 0.029 0.971 11 C -0.537 4.537 12 H 0.041 0.959 13 C 0.021 3.979 14 N -0.941 5.941 15 Si 0.946 3.054 16 H -0.263 1.263 17 H -0.295 1.295 18 H -0.246 1.246 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.216 4.216 22 C -0.076 4.076 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.394 0.606 33 H 0.269 0.731 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.577 -5.909 -1.949 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.101 4.101 4 C -0.160 4.160 5 C -0.089 4.089 6 C -0.240 4.240 7 C 0.101 3.899 8 N -0.354 5.354 9 C 0.152 3.848 10 H 0.047 0.953 11 C -0.575 4.575 12 H 0.059 0.941 13 C -0.178 4.178 14 N -0.580 5.580 15 Si 0.773 3.227 16 H -0.189 1.189 17 H -0.222 1.222 18 H -0.170 1.170 19 C -0.180 4.180 20 C -0.205 4.205 21 C -0.238 4.238 22 C -0.094 4.094 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.227 0.773 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.305 -5.854 -1.681 21.199 hybrid contribution 1.171 0.028 0.332 1.218 sum -19.134 -5.826 -1.348 20.047 Atomic orbital electron populations 1.21775 0.94888 1.01900 1.02151 1.21501 0.96169 0.96109 1.01719 1.20456 0.89578 0.97263 1.02815 1.19796 0.96449 1.07184 0.92559 1.20910 0.92623 0.97146 0.98239 1.20721 0.95172 1.12239 0.95831 1.18207 0.83768 0.93264 0.94687 1.44912 1.02241 1.79972 1.08253 1.18737 0.90130 0.92131 0.83785 0.95317 1.21376 0.99051 1.40392 0.96676 0.94077 1.25722 0.94403 0.94644 1.03033 1.70014 1.08380 1.46014 1.33609 0.85884 0.79918 0.78190 0.78738 1.18868 1.22237 1.16957 1.22278 0.97409 0.98601 0.99700 1.22134 0.96499 1.00193 1.01626 1.21027 0.95154 1.10984 0.96670 1.20915 0.92579 0.97579 0.98369 0.92253 0.92478 0.92442 0.92477 0.92751 0.91125 0.90757 0.84556 0.86076 0.77269 0.92161 0.92642 0.93872 0.92616 0.91755 0.92406 0.86651 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 3 C -0.06 -1.19 5.34 29.85 0.16 -1.03 16 4 C -0.16 -3.97 5.14 -19.84 -0.10 -4.07 16 5 C -0.07 -1.84 9.69 22.25 0.22 -1.63 16 6 C -0.22 -6.68 9.90 22.40 0.22 -6.46 16 7 C 0.21 7.40 5.48 38.21 0.21 7.61 16 8 N -0.73 -29.65 5.18 -322.50 -1.67 -31.32 16 9 C 0.26 11.86 1.79 44.25 0.08 11.94 16 10 H 0.03 1.39 5.54 -2.39 -0.01 1.37 16 11 C -0.54 -30.04 9.31 25.60 0.24 -29.80 16 12 H 0.04 2.54 7.98 -2.91 -0.02 2.51 16 13 C 0.02 1.19 5.45 84.66 0.46 1.65 16 14 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 15 Si 0.95 43.86 24.41 68.60 1.67 45.53 16 16 H -0.26 -11.56 6.83 99.48 0.68 -10.89 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.25 -10.56 6.53 99.48 0.65 -9.91 16 19 C -0.14 -5.89 5.11 30.59 0.16 -5.74 16 20 C -0.15 -5.06 8.22 71.98 0.59 -4.47 16 21 C -0.22 -7.34 6.72 22.40 0.15 -7.19 16 22 C -0.08 -2.13 9.69 22.25 0.22 -1.92 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 29 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 30 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.39 15.70 8.55 -92.71 -0.79 14.91 16 33 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 34 H 0.05 2.33 8.14 -2.39 -0.02 2.32 16 35 H 0.04 1.87 3.22 -2.39 -0.01 1.87 16 36 H 0.05 1.84 6.35 -2.39 -0.02 1.82 16 37 H 0.06 2.21 5.39 -2.39 -0.01 2.19 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.12 4.17 4.01 -2.91 -0.01 4.16 16 40 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -61.82 308.37 3.94 -57.88 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.14 Total: 29.59 kcal Atomic # 6 Polarization: -47.73 SS G_CDS: 3.49 Total: -44.24 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -1.37 Total: -88.77 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.67 Total: 45.53 kcal Total: -61.82 3.94 -57.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037287413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.414 kcal (2) G-P(sol) polarization free energy of solvation -61.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds