Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.38284 * 119.92604 * 90.00200 * 4 3 2 6 6 C 1.38101 * 120.07269 * 179.97438 * 5 4 3 7 7 C 1.38907 * 119.92859 * 359.97438 * 6 5 4 8 8 N 1.39671 * 120.07675 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00042 * 179.72674 * 8 7 6 10 10 H 1.08998 * 109.47315 * 35.27486 * 9 8 7 11 11 C 1.50697 * 109.47203 * 155.27747 * 9 8 7 12 12 H 1.08000 * 120.00017 * 5.45209 * 11 9 8 13 13 C 1.37872 * 120.00085 * 185.45138 * 11 9 8 14 14 N 1.31516 * 119.99991 * 9.49343 * 13 11 9 15 15 Si 1.86803 * 120.00017 * 189.48674 * 13 11 9 16 16 H 1.48496 * 109.47042 * 84.99878 * 15 13 11 17 17 H 1.48506 * 109.47220 * 204.99267 * 15 13 11 18 18 H 1.48495 * 109.47189 * 324.99660 * 15 13 11 19 19 C 1.52999 * 109.47144 * 275.27492 * 9 8 7 20 20 C 1.53000 * 109.47152 * 65.52804 * 19 9 8 21 21 C 1.38915 * 119.84993 * 0.25873 * 7 6 5 22 22 C 1.38110 * 119.92304 * 359.48982 * 21 7 6 23 23 H 1.09007 * 109.47113 * 60.00438 * 1 2 3 24 24 H 1.09002 * 109.47476 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47597 * 300.00242 * 1 2 3 26 26 H 1.08992 * 109.46922 * 239.99683 * 2 1 3 27 27 H 1.08998 * 109.46824 * 119.99671 * 2 1 3 28 28 H 1.09006 * 109.47482 * 59.99860 * 3 2 1 29 29 H 1.09001 * 109.47418 * 299.99811 * 3 2 1 30 30 H 1.08004 * 119.96213 * 359.95077 * 5 4 3 31 31 H 1.08003 * 120.03555 * 179.97438 * 6 5 4 32 32 H 0.97003 * 119.99741 * 0.02562 * 8 7 6 33 33 H 0.97007 * 119.99928 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.47390 * 185.52861 * 19 9 8 35 35 H 1.09000 * 109.47520 * 305.53118 * 19 9 8 36 36 H 1.09001 * 109.47020 * 300.00284 * 20 19 9 37 37 H 1.08994 * 109.47335 * 59.99806 * 20 19 9 38 38 H 1.08999 * 109.47228 * 180.02562 * 20 19 9 39 39 H 1.07997 * 120.03798 * 179.72865 * 21 7 6 40 40 H 1.07996 * 119.96099 * 180.25907 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2374 1.4422 -1.1975 6 6 5.6184 1.4427 -1.2005 7 6 6.3140 1.4439 0.0019 8 7 7.7107 1.4439 0.0025 9 6 8.4427 1.4512 1.2715 10 1 7.8975 0.8620 2.0089 11 6 9.8116 0.8558 1.0653 12 1 10.1399 0.5880 0.0719 13 6 10.6448 0.6528 2.1449 14 7 10.1844 0.8009 3.3679 15 14 12.4277 0.1674 1.8704 16 1 13.2447 1.3877 1.6503 17 1 12.9327 -0.5577 3.0640 18 1 12.5230 -0.7137 0.6789 19 6 8.5827 2.8905 1.7713 20 6 7.1995 3.4489 2.1117 21 6 5.6174 1.4392 1.2037 22 6 4.2363 1.4439 1.1995 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6959 1.4413 -2.1321 31 1 6.1570 1.4422 -2.1366 32 1 8.1961 1.4434 -0.8374 33 1 10.7708 0.6584 4.1274 34 1 9.2103 2.9063 2.6623 35 1 9.0401 3.5023 0.9937 36 1 6.5719 3.4331 1.2206 37 1 6.7420 2.8373 2.8892 38 1 7.2991 4.4745 2.4673 39 1 6.1551 1.4357 2.1402 40 1 3.6941 1.4445 2.1335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037287414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = 0.723282 kcal Electronic energy + Delta-G solvation = -17804.939454 eV Core-core repulsion = 15197.405382 eV Total energy + Delta-G solvation = -2607.534072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.14225 -36.45896 -34.45247 -32.55015 -31.41624 -30.06516 -29.40146 -26.95194 -24.88067 -22.94468 -22.39543 -21.65052 -20.46270 -19.22237 -17.25386 -16.00638 -15.43266 -14.97547 -14.86570 -14.18258 -13.84698 -13.60456 -13.40010 -13.14827 -12.89415 -12.44871 -12.21588 -11.95155 -11.80499 -11.58857 -11.41039 -11.11350 -11.01127 -10.79604 -10.66258 -10.52398 -10.39565 -10.20908 -10.14372 -9.64937 -9.21994 -8.91470 -8.45134 -8.25318 -6.39523 -6.18520 -4.23219 2.07009 2.26114 3.22926 3.29838 3.31771 4.26773 4.48276 4.62845 5.05943 5.09309 5.14206 5.22556 5.41889 5.56335 5.66150 5.72655 5.87883 5.92937 5.99813 6.05965 6.12623 6.19692 6.25009 6.36061 6.41266 6.46937 6.53301 6.63504 6.91604 6.93216 7.01907 7.11896 7.18190 7.28093 7.39773 7.60173 7.67823 7.74974 8.04505 8.38985 8.74680 8.93057 9.42449 10.88896 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038482 B = 0.004557 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.441259 B = 6143.271152 C = 6210.870082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.064 4.064 4 C -0.171 4.171 5 C -0.070 4.070 6 C -0.220 4.220 7 C 0.235 3.765 8 N -0.725 5.725 9 C 0.271 3.729 10 H 0.047 0.953 11 C -0.534 4.534 12 H 0.060 0.940 13 C 0.069 3.931 14 N -0.883 5.883 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.125 4.125 20 C -0.153 4.153 21 C -0.198 4.198 22 C -0.072 4.072 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.388 0.612 33 H 0.265 0.735 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.028 0.972 39 H 0.133 0.867 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 1.444 -5.172 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.101 4.101 4 C -0.174 4.174 5 C -0.089 4.089 6 C -0.243 4.243 7 C 0.126 3.874 8 N -0.347 5.347 9 C 0.168 3.832 10 H 0.065 0.935 11 C -0.572 4.572 12 H 0.078 0.922 13 C -0.135 4.135 14 N -0.520 5.520 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.164 4.164 20 C -0.210 4.210 21 C -0.220 4.220 22 C -0.091 4.091 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.221 0.779 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.150 0.850 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.566 1.421 -4.753 13.510 hybrid contribution 1.299 -0.213 -0.372 1.368 sum -11.268 1.208 -5.124 12.437 Atomic orbital electron populations 1.21804 0.96448 1.01220 1.01485 1.21543 0.94786 0.97175 1.02252 1.20377 0.92053 0.96194 1.01517 1.19351 0.94543 1.10311 0.93196 1.20519 0.93271 0.98488 0.96651 1.20474 0.94236 1.13546 0.96074 1.18023 0.84992 0.91050 0.93367 1.45524 1.01434 1.77677 1.10077 1.18733 0.91172 0.92292 0.80977 0.93533 1.21174 0.99287 1.42704 0.94020 0.92186 1.24867 0.98827 0.94863 0.94894 1.69956 1.35623 1.48593 0.97843 0.86536 0.84666 0.78605 0.77775 1.20437 1.21139 1.19920 1.21942 0.95125 0.98061 1.01263 1.22207 0.99434 0.98727 1.00612 1.21065 0.93988 1.09270 0.97714 1.20658 0.93512 0.98228 0.96732 0.93015 0.93093 0.92928 0.92148 0.92004 0.92081 0.92212 0.87518 0.87265 0.77904 0.92567 0.90308 0.94473 0.92892 0.93249 0.95245 0.84974 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 3 C -0.06 -0.77 5.34 -27.88 -0.15 -0.92 16 4 C -0.17 -2.60 5.14 -104.58 -0.54 -3.13 16 5 C -0.07 -1.09 9.69 -39.61 -0.38 -1.47 16 6 C -0.22 -3.76 9.90 -39.38 -0.39 -4.15 16 7 C 0.23 4.54 5.49 -83.79 -0.46 4.08 16 8 N -0.73 -15.15 5.19 -53.29 -0.28 -15.42 16 9 C 0.27 6.51 2.06 -69.08 -0.14 6.37 16 10 H 0.05 1.25 6.42 -51.93 -0.33 0.91 16 11 C -0.53 -14.01 8.66 -34.44 -0.30 -14.31 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 14 N -0.88 -24.29 12.16 55.43 0.67 -23.61 16 15 Si 0.90 20.58 29.55 -169.99 -5.02 15.55 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.12 -2.85 5.50 -26.73 -0.15 -3.00 16 20 C -0.15 -3.04 8.23 37.16 0.31 -2.74 16 21 C -0.20 -3.76 6.71 -39.38 -0.26 -4.02 16 22 C -0.07 -1.20 9.69 -39.61 -0.38 -1.58 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 32 H 0.39 7.63 8.54 -40.82 -0.35 7.28 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.08 1.99 6.79 -51.93 -0.35 1.64 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 1.04 5.36 -51.93 -0.28 0.76 16 37 H 0.05 0.98 6.40 -51.93 -0.33 0.64 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.13 2.70 4.03 -52.49 -0.21 2.49 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -26.66 316.52 -9.05 -35.71 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.47 Total: 8.65 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -2.73 Total: -25.65 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.40 Total: -39.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.66 -9.05 -35.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037287414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.432 kcal (2) G-P(sol) polarization free energy of solvation -26.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds