Wall clock time and date at job start Mon Mar 30 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.38284 * 119.92604 * 90.00200 * 4 3 2 6 6 C 1.38101 * 120.07269 * 179.97438 * 5 4 3 7 7 C 1.38907 * 119.92859 * 359.97438 * 6 5 4 8 8 N 1.39671 * 120.07675 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00042 * 179.72674 * 8 7 6 10 10 H 1.08998 * 109.47315 * 35.27486 * 9 8 7 11 11 C 1.50697 * 109.47203 * 155.27747 * 9 8 7 12 12 H 1.08000 * 120.00017 * 5.45209 * 11 9 8 13 13 C 1.37872 * 120.00085 * 185.45138 * 11 9 8 14 14 N 1.31516 * 119.99991 * 9.49343 * 13 11 9 15 15 Si 1.86803 * 120.00017 * 189.48674 * 13 11 9 16 16 H 1.48496 * 109.47042 * 84.99878 * 15 13 11 17 17 H 1.48506 * 109.47220 * 204.99267 * 15 13 11 18 18 H 1.48495 * 109.47189 * 324.99660 * 15 13 11 19 19 C 1.52999 * 109.47144 * 275.27492 * 9 8 7 20 20 C 1.53000 * 109.47152 * 65.52804 * 19 9 8 21 21 C 1.38915 * 119.84993 * 0.25873 * 7 6 5 22 22 C 1.38110 * 119.92304 * 359.48982 * 21 7 6 23 23 H 1.09007 * 109.47113 * 60.00438 * 1 2 3 24 24 H 1.09002 * 109.47476 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47597 * 300.00242 * 1 2 3 26 26 H 1.08992 * 109.46922 * 239.99683 * 2 1 3 27 27 H 1.08998 * 109.46824 * 119.99671 * 2 1 3 28 28 H 1.09006 * 109.47482 * 59.99860 * 3 2 1 29 29 H 1.09001 * 109.47418 * 299.99811 * 3 2 1 30 30 H 1.08004 * 119.96213 * 359.95077 * 5 4 3 31 31 H 1.08003 * 120.03555 * 179.97438 * 6 5 4 32 32 H 0.97003 * 119.99741 * 0.02562 * 8 7 6 33 33 H 0.97007 * 119.99928 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.47390 * 185.52861 * 19 9 8 35 35 H 1.09000 * 109.47520 * 305.53118 * 19 9 8 36 36 H 1.09001 * 109.47020 * 300.00284 * 20 19 9 37 37 H 1.08994 * 109.47335 * 59.99806 * 20 19 9 38 38 H 1.08999 * 109.47228 * 180.02562 * 20 19 9 39 39 H 1.07997 * 120.03798 * 179.72865 * 21 7 6 40 40 H 1.07996 * 119.96099 * 180.25907 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2374 1.4422 -1.1975 6 6 5.6184 1.4427 -1.2005 7 6 6.3140 1.4439 0.0019 8 7 7.7107 1.4439 0.0025 9 6 8.4427 1.4512 1.2715 10 1 7.8975 0.8620 2.0089 11 6 9.8116 0.8558 1.0653 12 1 10.1399 0.5880 0.0719 13 6 10.6448 0.6528 2.1449 14 7 10.1844 0.8009 3.3679 15 14 12.4277 0.1674 1.8704 16 1 13.2447 1.3877 1.6503 17 1 12.9327 -0.5577 3.0640 18 1 12.5230 -0.7137 0.6789 19 6 8.5827 2.8905 1.7713 20 6 7.1995 3.4489 2.1117 21 6 5.6174 1.4392 1.2037 22 6 4.2363 1.4439 1.1995 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6959 1.4413 -2.1321 31 1 6.1570 1.4422 -2.1366 32 1 8.1961 1.4434 -0.8374 33 1 10.7708 0.6584 4.1274 34 1 9.2103 2.9063 2.6623 35 1 9.0401 3.5023 0.9937 36 1 6.5719 3.4331 1.2206 37 1 6.7420 2.8373 2.8892 38 1 7.2991 4.4745 2.4673 39 1 6.1551 1.4357 2.1402 40 1 3.6941 1.4445 2.1335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037287414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:21 Heat of formation + Delta-G solvation = -11.829971 kcal Electronic energy + Delta-G solvation = -17805.483804 eV Core-core repulsion = 15197.405382 eV Total energy + Delta-G solvation = -2608.078422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53869 -37.96123 -35.70854 -34.26012 -33.04379 -31.44715 -30.75606 -28.58257 -26.22185 -24.70264 -23.83639 -22.74553 -21.76172 -20.80549 -19.01963 -17.62348 -17.09156 -16.45560 -16.03420 -15.73094 -15.26648 -15.07294 -14.63209 -14.39432 -14.24364 -13.96106 -13.55719 -13.39966 -13.29205 -13.06891 -12.81318 -12.69843 -12.59856 -12.17158 -12.04642 -11.92388 -11.83661 -11.63490 -11.43701 -11.27673 -11.03988 -10.62016 -10.32647 -9.60234 -8.23530 -7.87837 -6.32345 0.72175 0.91880 1.40564 1.41768 1.50731 2.36947 3.02098 3.08814 3.15144 4.08479 4.10908 4.28276 4.29947 4.39800 4.47542 4.55114 4.67649 4.70030 4.71670 4.79723 4.95654 4.99742 5.03847 5.12620 5.13476 5.24754 5.30046 5.32178 5.37935 5.41515 5.53965 5.56379 5.64040 5.70316 5.76029 5.80851 6.00829 6.08847 6.30261 6.59836 6.91105 7.26963 7.39524 8.86153 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038482 B = 0.004557 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.441259 B = 6143.271152 C = 6210.870082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.062 4.062 4 C -0.160 4.160 5 C -0.071 4.071 6 C -0.218 4.218 7 C 0.207 3.793 8 N -0.733 5.733 9 C 0.283 3.717 10 H 0.011 0.989 11 C -0.552 4.552 12 H 0.059 0.941 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 0.960 3.040 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.117 4.117 20 C -0.138 4.138 21 C -0.215 4.215 22 C -0.079 4.079 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.392 0.608 33 H 0.265 0.735 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.108 0.892 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 1.690 -6.635 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.099 4.099 4 C -0.163 4.163 5 C -0.089 4.089 6 C -0.241 4.241 7 C 0.101 3.899 8 N -0.358 5.358 9 C 0.178 3.822 10 H 0.029 0.971 11 C -0.590 4.590 12 H 0.077 0.923 13 C -0.179 4.179 14 N -0.550 5.550 15 Si 0.785 3.215 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.156 4.156 20 C -0.195 4.195 21 C -0.238 4.238 22 C -0.097 4.097 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.142 0.858 32 H 0.225 0.775 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.126 0.874 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.242 1.668 -6.236 15.636 hybrid contribution 1.652 -0.314 0.051 1.683 sum -12.589 1.354 -6.185 14.092 Atomic orbital electron populations 1.21768 0.94690 1.01907 1.02226 1.21510 0.96326 0.96247 1.01562 1.20442 0.89525 0.97130 1.02846 1.19773 0.96461 1.07546 0.92473 1.20909 0.92684 0.97204 0.98138 1.20722 0.95157 1.12541 0.95724 1.18237 0.84262 0.92926 0.94477 1.45200 1.02159 1.79570 1.08848 1.18332 0.90075 0.92064 0.81688 0.97091 1.21541 1.00566 1.42829 0.94043 0.92288 1.25645 1.02646 0.94938 0.94638 1.70074 1.36883 1.49519 0.98524 0.85544 0.79870 0.78395 0.77669 1.19811 1.20917 1.19422 1.21773 0.96300 0.97752 0.99772 1.22044 0.97519 0.99304 1.00654 1.21001 0.95123 1.10861 0.96804 1.20888 0.92601 0.97930 0.98326 0.92029 0.92517 0.92445 0.92468 0.93170 0.91233 0.90466 0.84358 0.85801 0.77472 0.92569 0.93156 0.94567 0.92481 0.93748 0.93512 0.87404 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.12 -2.32 5.92 30.59 0.18 -2.14 16 3 C -0.06 -1.29 5.34 29.85 0.16 -1.13 16 4 C -0.16 -4.45 5.14 -19.84 -0.10 -4.55 16 5 C -0.07 -1.98 9.69 22.25 0.22 -1.77 16 6 C -0.22 -7.13 9.90 22.40 0.22 -6.91 16 7 C 0.21 8.06 5.49 38.21 0.21 8.27 16 8 N -0.73 -31.37 5.19 -322.51 -1.67 -33.05 16 9 C 0.28 14.13 2.06 44.24 0.09 14.22 16 10 H 0.01 0.64 6.42 -2.39 -0.02 0.62 16 11 C -0.55 -29.76 8.66 25.60 0.22 -29.54 16 12 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.02 1.19 5.15 84.65 0.44 1.63 16 14 N -0.91 -51.74 12.16 21.45 0.26 -51.48 16 15 Si 0.96 42.72 29.55 68.60 2.03 44.74 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 C -0.12 -5.51 5.50 30.59 0.17 -5.34 16 20 C -0.14 -5.60 8.23 71.98 0.59 -5.01 16 21 C -0.22 -8.31 6.71 22.40 0.15 -8.16 16 22 C -0.08 -2.53 9.69 22.25 0.22 -2.31 16 23 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.36 8.08 -2.38 -0.02 1.34 16 29 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 30 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.39 15.68 8.54 -92.71 -0.79 14.89 16 33 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 34 H 0.05 2.64 6.79 -2.39 -0.02 2.62 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.06 2.26 5.36 -2.39 -0.01 2.25 16 37 H 0.04 1.82 6.40 -2.39 -0.02 1.80 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 4.66 4.03 -2.91 -0.01 4.65 16 40 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -58.08 316.52 4.31 -53.77 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.22 Total: 30.28 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 3.47 Total: -44.27 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.41 Total: -84.52 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -58.08 4.31 -53.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037287414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.941 kcal (2) G-P(sol) polarization free energy of solvation -58.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds