Wall clock time and date at job start Mon Mar 30 2020 05:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46991 * 2 1 4 4 C 1.53003 * 109.47489 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47467 * 180.02562 * 4 3 2 6 6 C 1.38289 * 119.92781 * 89.99641 * 5 4 3 7 7 C 1.38098 * 120.07180 * 179.97438 * 6 5 4 8 8 C 1.38910 * 119.92853 * 0.02562 * 7 6 5 9 9 N 1.39672 * 120.07560 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00302 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47186 * 325.00130 * 10 9 8 12 12 C 1.53000 * 109.47265 * 84.99634 * 10 9 8 13 13 C 1.50696 * 109.47443 * 204.99589 * 10 9 8 14 14 H 1.08001 * 120.00241 * 354.36438 * 13 10 9 15 15 C 1.37885 * 120.00172 * 174.35983 * 13 10 9 16 16 N 1.31512 * 119.99792 * 156.86713 * 15 13 10 17 17 Si 1.86797 * 119.99848 * 336.86751 * 15 13 10 18 18 H 1.48501 * 109.46944 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47182 * 299.99653 * 17 15 13 20 20 H 1.48501 * 109.47156 * 59.99862 * 17 15 13 21 21 C 1.38916 * 119.85043 * 0.24509 * 8 7 6 22 22 C 1.38098 * 119.92224 * 359.49932 * 21 8 7 23 23 H 1.09004 * 109.46683 * 60.00515 * 1 2 3 24 24 H 1.08998 * 109.46961 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47123 * 300.00225 * 1 2 3 26 26 H 1.08997 * 109.47559 * 240.00066 * 2 1 3 27 27 H 1.09004 * 109.46683 * 119.99485 * 2 1 3 28 28 H 1.09007 * 109.47433 * 59.99610 * 3 2 1 29 29 H 1.09006 * 109.47154 * 299.99809 * 3 2 1 30 30 H 1.08999 * 109.46717 * 59.99718 * 4 3 2 31 31 H 1.09004 * 109.46590 * 299.99733 * 4 3 2 32 32 H 1.07997 * 119.95730 * 359.96142 * 6 5 4 33 33 H 1.08004 * 120.03374 * 179.97438 * 7 6 5 34 34 H 0.97009 * 120.00166 * 359.97438 * 9 8 7 35 35 H 1.09001 * 109.47137 * 293.11248 * 12 10 9 36 36 H 1.08998 * 109.47063 * 53.10663 * 12 10 9 37 37 H 1.09000 * 109.47182 * 173.10626 * 12 10 9 38 38 H 0.97001 * 120.00406 * 354.92575 * 16 15 13 39 39 H 1.08000 * 120.03630 * 179.73261 * 21 8 7 40 40 H 1.08004 * 119.96194 * 180.25303 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 6 4.3017 3.5136 1.2001 7 6 4.7625 4.8154 1.2041 8 6 4.9951 5.4720 0.0023 9 7 5.4606 6.7889 0.0028 10 6 5.7059 7.4796 -1.2656 11 1 6.0798 6.7672 -2.0009 12 6 4.4002 8.0964 -1.7713 13 6 6.7271 8.5677 -1.0558 14 1 7.0836 8.7893 -0.0606 15 6 7.2066 9.2805 -2.1343 16 7 7.7156 10.4800 -1.9559 17 14 7.1333 8.5424 -3.8487 18 1 7.7072 9.5022 -4.8258 19 1 7.9139 7.2795 -3.8778 20 1 5.7199 8.2591 -4.2056 21 6 4.7582 4.8179 -1.2001 22 6 4.3025 3.5143 -1.1970 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9290 0.8909 32 1 4.1200 3.0027 2.1340 33 1 4.9410 5.3227 2.1407 34 1 5.6215 7.2461 0.8431 35 1 3.7031 7.3023 -2.0391 36 1 3.9628 8.7145 -0.9873 37 1 4.6044 8.7116 -2.6476 38 1 7.6871 10.8935 -1.0790 39 1 4.9339 5.3270 -2.1362 40 1 4.1220 3.0037 -2.1315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:57 Heat of formation + Delta-G solvation = -7.302899 kcal Electronic energy + Delta-G solvation = -17343.659102 eV Core-core repulsion = 14735.776988 eV Total energy + Delta-G solvation = -2607.882114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14350 -36.51122 -35.11764 -32.91474 -31.35219 -30.44796 -29.38935 -26.89729 -24.83823 -23.51104 -22.53394 -21.26305 -20.65116 -19.61814 -17.91158 -16.51571 -15.73043 -15.18071 -14.85752 -14.10810 -14.05357 -13.77414 -13.37832 -13.05721 -12.99704 -12.76974 -12.61758 -12.31810 -12.04662 -11.99999 -11.47402 -11.37953 -11.24885 -11.14476 -10.66431 -10.56692 -10.50302 -10.40633 -10.04243 -9.91482 -9.37352 -9.01071 -8.46723 -8.32894 -6.72447 -6.51040 -4.22730 1.91500 2.11702 3.32297 3.37973 3.53734 4.32771 4.36398 4.41106 4.80277 4.84510 5.03166 5.07643 5.18778 5.30503 5.42041 5.49016 5.66553 5.68108 5.72650 5.77186 5.89749 5.92464 6.03747 6.07125 6.21493 6.27950 6.30431 6.35332 6.47850 6.55920 6.61968 6.80374 6.91961 6.93557 7.14079 7.28712 7.42269 7.72602 8.13181 8.27948 8.62418 8.80935 9.43564 10.75723 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.004193 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.041951 B = 6675.893308 C = 6972.278894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.065 4.065 5 C -0.170 4.170 6 C -0.066 4.066 7 C -0.215 4.215 8 C 0.233 3.767 9 N -0.720 5.720 10 C 0.248 3.752 11 H 0.030 0.970 12 C -0.160 4.160 13 C -0.622 4.622 14 H 0.061 0.939 15 C 0.043 3.957 16 N -0.891 5.891 17 Si 1.034 2.966 18 H -0.282 1.282 19 H -0.280 1.280 20 H -0.274 1.274 21 C -0.205 4.205 22 C -0.066 4.066 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.393 0.607 35 H 0.027 0.973 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.271 0.729 39 H 0.120 0.880 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -17.110 3.151 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.172 4.172 6 C -0.085 4.085 7 C -0.238 4.238 8 C 0.124 3.876 9 N -0.342 5.342 10 C 0.144 3.856 11 H 0.048 0.952 12 C -0.219 4.219 13 C -0.660 4.660 14 H 0.079 0.921 15 C -0.164 4.164 16 N -0.523 5.523 17 Si 0.861 3.139 18 H -0.207 1.207 19 H -0.206 1.206 20 H -0.200 1.200 21 C -0.228 4.228 22 C -0.084 4.084 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.226 0.774 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.083 -16.666 1.370 19.527 hybrid contribution -0.317 0.072 1.991 2.018 sum -10.399 -16.594 3.361 19.870 Atomic orbital electron populations 1.21781 0.96172 1.01241 1.01841 1.21566 0.95627 0.97379 1.01746 1.21640 0.95370 0.95940 1.02282 1.20377 0.94768 0.93378 1.01701 1.19377 1.08187 0.96548 0.93125 1.20571 0.97354 0.93782 0.96805 1.20500 1.10835 0.96374 0.96100 1.18074 0.90400 0.85602 0.93534 1.45309 1.69275 1.09916 1.09724 1.18929 0.92940 0.91599 0.82170 0.95249 1.22530 0.98884 0.99593 1.00915 1.22012 1.27505 1.20001 0.96464 0.92088 1.25660 0.93149 0.93800 1.03815 1.70851 1.43210 1.12031 1.26218 0.84188 0.77315 0.76303 0.76135 1.20725 1.20646 1.20047 1.20721 1.09128 0.95994 0.96981 1.20667 0.97079 0.93806 0.96897 0.92784 0.93073 0.92824 0.92198 0.92248 0.92097 0.92014 0.91967 0.92047 0.87232 0.87026 0.77379 0.95436 0.93631 0.92428 0.91919 0.86165 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.11 -1.17 5.20 -26.73 -0.14 -1.31 16 4 C -0.06 -0.73 5.34 -27.88 -0.15 -0.88 16 5 C -0.17 -2.44 5.14 -104.58 -0.54 -2.97 16 6 C -0.07 -0.98 9.69 -39.61 -0.38 -1.36 16 7 C -0.21 -3.58 9.90 -39.38 -0.39 -3.97 16 8 C 0.23 4.43 6.64 -83.79 -0.56 3.87 16 9 N -0.72 -15.05 5.24 -53.29 -0.28 -15.33 16 10 C 0.25 5.81 1.85 -69.09 -0.13 5.68 16 11 H 0.03 0.71 5.07 -51.93 -0.26 0.45 16 12 C -0.16 -3.54 9.15 37.16 0.34 -3.20 16 13 C -0.62 -16.95 8.95 -34.44 -0.31 -17.26 16 14 H 0.06 1.78 7.96 -52.49 -0.42 1.36 16 15 C 0.04 1.21 5.19 -17.82 -0.09 1.12 16 16 N -0.89 -26.49 13.70 55.43 0.76 -25.73 16 17 Si 1.03 24.33 26.44 -169.99 -4.50 19.84 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -5.97 6.15 56.52 0.35 -5.62 16 21 C -0.21 -3.76 8.89 -39.38 -0.35 -4.11 16 22 C -0.07 -1.03 9.69 -39.61 -0.38 -1.41 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.39 7.89 8.54 -40.82 -0.35 7.54 16 35 H 0.03 0.54 7.62 -51.93 -0.40 0.15 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.30 5.48 -51.93 -0.28 1.02 16 38 H 0.27 8.00 8.73 -40.82 -0.36 7.65 16 39 H 0.12 2.28 6.00 -52.49 -0.31 1.96 16 40 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -28.38 322.08 -8.75 -37.13 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.72 Total: 7.10 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.87 Total: -27.86 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.48 Total: -41.06 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.50 Total: 19.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.38 -8.75 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.823 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds