Wall clock time and date at job start Mon Mar 30 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46991 * 2 1 4 4 C 1.53003 * 109.47489 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47467 * 180.02562 * 4 3 2 6 6 C 1.38289 * 119.92781 * 89.99641 * 5 4 3 7 7 C 1.38098 * 120.07180 * 179.97438 * 6 5 4 8 8 C 1.38910 * 119.92853 * 0.02562 * 7 6 5 9 9 N 1.39672 * 120.07560 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00302 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47186 * 325.00130 * 10 9 8 12 12 C 1.53000 * 109.47265 * 84.99634 * 10 9 8 13 13 C 1.50696 * 109.47443 * 204.99589 * 10 9 8 14 14 H 1.08001 * 120.00241 * 354.36438 * 13 10 9 15 15 C 1.37885 * 120.00172 * 174.35983 * 13 10 9 16 16 N 1.31512 * 119.99792 * 156.86713 * 15 13 10 17 17 Si 1.86797 * 119.99848 * 336.86751 * 15 13 10 18 18 H 1.48501 * 109.46944 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47182 * 299.99653 * 17 15 13 20 20 H 1.48501 * 109.47156 * 59.99862 * 17 15 13 21 21 C 1.38916 * 119.85043 * 0.24509 * 8 7 6 22 22 C 1.38098 * 119.92224 * 359.49932 * 21 8 7 23 23 H 1.09004 * 109.46683 * 60.00515 * 1 2 3 24 24 H 1.08998 * 109.46961 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47123 * 300.00225 * 1 2 3 26 26 H 1.08997 * 109.47559 * 240.00066 * 2 1 3 27 27 H 1.09004 * 109.46683 * 119.99485 * 2 1 3 28 28 H 1.09007 * 109.47433 * 59.99610 * 3 2 1 29 29 H 1.09006 * 109.47154 * 299.99809 * 3 2 1 30 30 H 1.08999 * 109.46717 * 59.99718 * 4 3 2 31 31 H 1.09004 * 109.46590 * 299.99733 * 4 3 2 32 32 H 1.07997 * 119.95730 * 359.96142 * 6 5 4 33 33 H 1.08004 * 120.03374 * 179.97438 * 7 6 5 34 34 H 0.97009 * 120.00166 * 359.97438 * 9 8 7 35 35 H 1.09001 * 109.47137 * 293.11248 * 12 10 9 36 36 H 1.08998 * 109.47063 * 53.10663 * 12 10 9 37 37 H 1.09000 * 109.47182 * 173.10626 * 12 10 9 38 38 H 0.97001 * 120.00406 * 354.92575 * 16 15 13 39 39 H 1.08000 * 120.03630 * 179.73261 * 21 8 7 40 40 H 1.08004 * 119.96194 * 180.25303 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 6 4.3017 3.5136 1.2001 7 6 4.7625 4.8154 1.2041 8 6 4.9951 5.4720 0.0023 9 7 5.4606 6.7889 0.0028 10 6 5.7059 7.4796 -1.2656 11 1 6.0798 6.7672 -2.0009 12 6 4.4002 8.0964 -1.7713 13 6 6.7271 8.5677 -1.0558 14 1 7.0836 8.7893 -0.0606 15 6 7.2066 9.2805 -2.1343 16 7 7.7156 10.4800 -1.9559 17 14 7.1333 8.5424 -3.8487 18 1 7.7072 9.5022 -4.8258 19 1 7.9139 7.2795 -3.8778 20 1 5.7199 8.2591 -4.2056 21 6 4.7582 4.8179 -1.2001 22 6 4.3025 3.5143 -1.1970 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9290 0.8909 32 1 4.1200 3.0027 2.1340 33 1 4.9410 5.3227 2.1407 34 1 5.6215 7.2461 0.8431 35 1 3.7031 7.3023 -2.0391 36 1 3.9628 8.7145 -0.9873 37 1 4.6044 8.7116 -2.6476 38 1 7.6871 10.8935 -1.0790 39 1 4.9339 5.3270 -2.1362 40 1 4.1220 3.0037 -2.1315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:56 Heat of formation + Delta-G solvation = -22.099419 kcal Electronic energy + Delta-G solvation = -17344.300727 eV Core-core repulsion = 14735.776988 eV Total energy + Delta-G solvation = -2608.523739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44368 -37.86254 -36.25757 -34.70140 -32.76039 -31.68996 -30.79148 -28.08025 -26.80420 -24.55287 -23.88547 -22.31604 -21.78783 -21.11168 -19.88209 -18.06277 -16.97529 -16.23611 -16.18282 -15.56854 -15.26862 -14.90323 -14.86047 -14.60390 -14.32034 -14.08026 -13.88319 -13.61998 -13.43919 -13.32165 -13.09575 -12.53267 -12.37563 -12.15982 -12.04069 -11.91529 -11.72815 -11.60665 -11.42665 -11.29168 -11.22238 -10.60006 -10.46537 -9.72734 -8.87315 -8.03572 -6.44803 0.64186 0.83918 1.44653 1.50106 1.69632 2.43739 2.82316 2.93415 3.06720 3.98592 4.02326 4.19716 4.21764 4.31739 4.43883 4.48719 4.53044 4.66321 4.71014 4.76160 4.81442 4.86616 4.93620 4.97021 5.05098 5.08456 5.16520 5.23947 5.26305 5.38290 5.46028 5.47907 5.58424 5.58733 5.65695 5.72103 5.94242 5.95828 6.19499 6.36614 6.76529 7.08807 7.30464 8.52675 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.004193 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.041951 B = 6675.893308 C = 6972.278894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.063 4.063 5 C -0.158 4.158 6 C -0.068 4.068 7 C -0.218 4.218 8 C 0.203 3.797 9 N -0.733 5.733 10 C 0.255 3.745 11 H 0.029 0.971 12 C -0.153 4.153 13 C -0.626 4.626 14 H 0.027 0.973 15 C -0.004 4.004 16 N -0.923 5.923 17 Si 1.072 2.928 18 H -0.283 1.283 19 H -0.267 1.267 20 H -0.244 1.244 21 C -0.223 4.223 22 C -0.070 4.070 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.391 0.609 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.050 0.950 38 H 0.257 0.743 39 H 0.109 0.891 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.088 -20.308 2.709 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.100 4.100 5 C -0.160 4.160 6 C -0.086 4.086 7 C -0.241 4.241 8 C 0.097 3.903 9 N -0.358 5.358 10 C 0.150 3.850 11 H 0.047 0.953 12 C -0.212 4.212 13 C -0.663 4.663 14 H 0.045 0.955 15 C -0.205 4.205 16 N -0.557 5.557 17 Si 0.892 3.108 18 H -0.209 1.209 19 H -0.192 1.192 20 H -0.168 1.168 21 C -0.246 4.246 22 C -0.088 4.088 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.224 0.776 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.619 -19.913 0.955 23.075 hybrid contribution 0.118 0.938 2.266 2.455 sum -11.501 -18.976 3.221 22.422 Atomic orbital electron populations 1.21791 0.95846 1.01871 1.01661 1.21537 0.95912 0.96163 1.02385 1.21588 0.94546 0.97076 1.01675 1.20438 0.95341 0.91242 1.02981 1.19817 1.05840 0.97913 0.92464 1.20941 0.96247 0.93030 0.98382 1.20725 1.10437 0.97204 0.95716 1.18311 0.92152 0.84952 0.94863 1.45056 1.71268 1.10994 1.08502 1.18649 0.92334 0.90507 0.83496 0.95305 1.22401 0.98554 0.99901 1.00297 1.22231 1.28239 1.20965 0.94893 0.95513 1.27024 0.92345 0.93413 1.07723 1.70968 1.45722 1.13560 1.25460 0.83720 0.79337 0.75985 0.71766 1.20896 1.19180 1.16789 1.20818 1.10271 0.97250 0.96291 1.20952 0.96379 0.92907 0.98569 0.93077 0.92082 0.92946 0.91670 0.91506 0.92580 0.92823 0.90920 0.90620 0.84344 0.86171 0.77613 0.93265 0.94251 0.93114 0.93428 0.87268 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.68 5.93 30.59 0.18 -1.49 16 3 C -0.11 -1.91 5.20 30.59 0.16 -1.75 16 4 C -0.06 -1.16 5.34 29.85 0.16 -1.00 16 5 C -0.16 -4.03 5.14 -19.84 -0.10 -4.13 16 6 C -0.07 -1.79 9.69 22.25 0.22 -1.58 16 7 C -0.22 -6.94 9.90 22.40 0.22 -6.72 16 8 C 0.20 7.59 6.64 38.22 0.25 7.84 16 9 N -0.73 -31.03 5.24 -322.52 -1.69 -32.72 16 10 C 0.26 12.02 1.85 44.24 0.08 12.10 16 11 H 0.03 1.38 5.07 -2.39 -0.01 1.37 16 12 C -0.15 -6.64 9.15 71.98 0.66 -5.98 16 13 C -0.63 -35.08 8.95 25.60 0.23 -34.85 16 14 H 0.03 1.64 7.96 -2.91 -0.02 1.61 16 15 C 0.00 -0.24 5.19 84.66 0.44 0.20 16 16 N -0.92 -56.64 13.70 21.45 0.29 -56.35 16 17 Si 1.07 48.69 26.44 68.60 1.81 50.50 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.24 -9.83 6.15 99.48 0.61 -9.22 16 21 C -0.22 -7.90 8.89 22.40 0.20 -7.70 16 22 C -0.07 -2.00 9.69 22.25 0.22 -1.78 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 31 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 32 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 33 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.39 16.25 8.54 -92.70 -0.79 15.46 16 35 H 0.05 1.90 7.62 -2.39 -0.02 1.88 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 2.24 5.48 -2.39 -0.01 2.22 16 38 H 0.26 15.94 8.73 -92.71 -0.81 15.13 16 39 H 0.11 4.03 6.00 -2.91 -0.02 4.01 16 40 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -62.07 322.08 4.12 -57.95 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.08 Total: 28.75 kcal Atomic # 6 Polarization: -51.76 SS G_CDS: 3.63 Total: -48.14 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -1.40 Total: -89.07 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.81 Total: 50.50 kcal Total: -62.07 4.12 -57.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.848 kcal (2) G-P(sol) polarization free energy of solvation -62.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds