Wall clock time and date at job start Mon Mar 30 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46990 * 2 1 4 4 C 1.53000 * 109.47295 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47396 * 180.02562 * 4 3 2 6 6 C 1.38284 * 119.92910 * 89.99398 * 5 4 3 7 7 C 1.38102 * 120.07730 * 179.97438 * 6 5 4 8 8 C 1.38905 * 119.92398 * 0.28542 * 7 6 5 9 9 N 1.39669 * 120.07711 * 179.72013 * 8 7 6 10 10 C 1.46502 * 120.00681 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46536 * 35.00383 * 10 9 8 12 12 C 1.52998 * 109.47443 * 275.00602 * 10 9 8 13 13 C 1.50700 * 109.47421 * 154.99842 * 10 9 8 14 14 H 1.08001 * 119.99986 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99946 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00140 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99922 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47066 * 59.99908 * 17 15 13 19 19 H 1.48504 * 109.47080 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47258 * 299.99966 * 17 15 13 21 21 C 1.38915 * 119.85130 * 359.39707 * 8 7 6 22 22 C 1.38104 * 119.92213 * 0.62342 * 21 8 7 23 23 H 1.08993 * 109.46954 * 299.99575 * 1 2 3 24 24 H 1.09000 * 109.47174 * 60.00393 * 1 2 3 25 25 H 1.09007 * 109.46545 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47392 * 240.00269 * 2 1 3 27 27 H 1.09005 * 109.47615 * 119.99768 * 2 1 3 28 28 H 1.08996 * 109.47336 * 59.99780 * 3 2 1 29 29 H 1.09000 * 109.46842 * 299.99811 * 3 2 1 30 30 H 1.08998 * 109.47405 * 60.00074 * 4 3 2 31 31 H 1.09005 * 109.47297 * 299.99761 * 4 3 2 32 32 H 1.08000 * 119.96014 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.03497 * 180.02562 * 7 6 5 34 34 H 0.97008 * 120.00083 * 0.02562 * 9 8 7 35 35 H 1.09001 * 109.46529 * 299.99857 * 12 10 9 36 36 H 1.09002 * 109.47293 * 59.99326 * 12 10 9 37 37 H 1.08995 * 109.47245 * 179.97438 * 12 10 9 38 38 H 0.96996 * 119.99891 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.04048 * 180.29804 * 21 8 7 40 40 H 1.08007 * 119.96323 * 179.70078 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3026 3.5132 1.1987 7 6 4.7635 4.8151 1.2029 8 6 4.9900 5.4738 0.0011 9 7 5.4504 6.7924 0.0016 10 6 5.6893 7.4855 -1.2668 11 1 4.9507 7.1640 -2.0012 12 6 7.0930 7.1503 -1.7748 13 6 5.5733 8.9732 -1.0560 14 1 5.3449 9.3634 -0.0752 15 6 5.7587 9.8361 -2.1153 16 7 6.0364 9.3609 -3.3098 17 14 5.6157 11.6801 -1.8539 18 1 6.6226 12.1179 -0.8540 19 1 5.8565 12.3826 -3.1399 20 1 4.2536 12.0059 -1.3600 21 6 4.7638 4.8160 -1.2013 22 6 4.3026 3.5142 -1.1983 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9290 -0.8908 31 1 3.9337 0.9287 0.8892 32 1 4.1220 3.0020 2.1327 33 1 4.9436 5.3218 2.1395 34 1 5.6128 7.2492 0.8419 35 1 7.8315 7.4718 -1.0404 36 1 7.1769 6.0742 -1.9273 37 1 7.2705 7.6656 -2.7187 38 1 6.1672 9.9679 -4.0549 39 1 4.9435 5.3236 -2.1375 40 1 4.1220 3.0037 -2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:00 Heat of formation + Delta-G solvation = -7.591629 kcal Electronic energy + Delta-G solvation = -17263.136328 eV Core-core repulsion = 14655.241694 eV Total energy + Delta-G solvation = -2607.894634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.00116 -36.36445 -34.99959 -32.88808 -31.09028 -30.31004 -28.90109 -26.68926 -25.24767 -23.46579 -22.38913 -21.21315 -20.67476 -19.65257 -17.21714 -15.98377 -15.58291 -15.07329 -14.90527 -14.27440 -14.01919 -13.58179 -13.42732 -12.93438 -12.78685 -12.60402 -12.44593 -12.25589 -11.85628 -11.50508 -11.24809 -11.21728 -11.03804 -10.93094 -10.80865 -10.59222 -10.42890 -10.37985 -10.23191 -10.00812 -9.19276 -8.98527 -8.48941 -8.32915 -6.43931 -6.15986 -4.24428 2.04589 2.24793 3.23909 3.28789 3.30839 4.25963 4.45858 4.62329 4.88013 4.91280 5.10027 5.16198 5.27704 5.39334 5.52830 5.60798 5.73068 5.75622 5.80468 5.86928 5.98117 6.03545 6.10285 6.17883 6.36501 6.40601 6.48409 6.60006 6.72823 6.93418 7.00543 7.07144 7.09364 7.26310 7.38115 7.58160 7.69350 7.86232 8.08024 8.39282 8.72740 8.92917 9.42778 10.89638 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038859 B = 0.003838 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.373432 B = 7292.930326 C = 7410.408533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.064 4.064 5 C -0.173 4.173 6 C -0.068 4.068 7 C -0.218 4.218 8 C 0.235 3.765 9 N -0.727 5.727 10 C 0.268 3.732 11 H 0.040 0.960 12 C -0.152 4.152 13 C -0.531 4.531 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.201 4.201 22 C -0.067 4.067 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.388 0.612 35 H 0.028 0.972 36 H 0.013 0.987 37 H 0.089 0.911 38 H 0.265 0.735 39 H 0.124 0.876 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 -14.089 5.627 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.101 4.101 5 C -0.175 4.175 6 C -0.087 4.087 7 C -0.242 4.242 8 C 0.126 3.874 9 N -0.349 5.349 10 C 0.165 3.835 11 H 0.057 0.943 12 C -0.211 4.211 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.224 4.224 22 C -0.086 4.086 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.221 0.779 35 H 0.047 0.953 36 H 0.032 0.968 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.392 -13.871 5.208 15.767 hybrid contribution 0.054 1.298 0.397 1.359 sum -5.338 -12.572 5.605 14.764 Atomic orbital electron populations 1.21781 0.96203 1.01186 1.01865 1.21566 0.95603 0.97442 1.01689 1.21641 0.95441 0.95858 1.02320 1.20363 0.94725 0.93484 1.01555 1.19349 1.08497 0.96511 0.93167 1.20538 0.97601 0.93861 0.96686 1.20486 1.11306 0.96322 0.96080 1.18052 0.90304 0.85630 0.93417 1.45580 1.69406 1.09669 1.10195 1.18694 0.93144 0.90940 0.80711 0.94278 1.22183 0.98771 0.97130 1.03044 1.21190 1.49454 0.90466 0.95842 0.92227 1.24876 0.94627 0.99250 0.94941 1.69868 1.47391 1.35135 1.00085 0.86505 0.78693 0.84442 0.77469 1.20173 1.21089 1.20157 1.20786 1.08650 0.95688 0.97272 1.20670 0.97120 0.93994 0.96785 0.92836 0.92755 0.93122 0.92224 0.92297 0.92101 0.91981 0.92051 0.92169 0.87423 0.87181 0.77865 0.95312 0.96768 0.89257 0.92526 0.85788 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.14 5.93 -26.73 -0.16 -1.30 16 3 C -0.11 -1.26 5.20 -26.73 -0.14 -1.40 16 4 C -0.06 -0.76 5.34 -27.88 -0.15 -0.91 16 5 C -0.17 -2.62 5.14 -104.59 -0.54 -3.15 16 6 C -0.07 -1.05 9.69 -39.61 -0.38 -1.43 16 7 C -0.22 -3.77 9.90 -39.38 -0.39 -4.16 16 8 C 0.24 4.66 6.64 -83.79 -0.56 4.10 16 9 N -0.73 -15.56 5.24 -53.29 -0.28 -15.84 16 10 C 0.27 6.61 2.25 -69.08 -0.16 6.45 16 11 H 0.04 1.06 6.50 -51.92 -0.34 0.72 16 12 C -0.15 -3.68 9.19 37.16 0.34 -3.34 16 13 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 17 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.20 -3.92 8.83 -39.38 -0.35 -4.27 16 22 C -0.07 -1.11 9.69 -39.61 -0.38 -1.50 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.39 7.79 8.55 -40.82 -0.35 7.44 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.01 0.30 7.67 -51.93 -0.40 -0.09 16 37 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.12 2.59 6.09 -52.49 -0.32 2.27 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -27.11 325.58 -9.40 -36.51 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.75 Total: 7.23 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.89 Total: -24.61 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.35 Total: -39.75 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.11 -9.40 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.920 kcal (2) G-P(sol) polarization free energy of solvation -27.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds