Wall clock time and date at job start Mon Mar 30 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46990 * 2 1 4 4 C 1.53000 * 109.47295 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47396 * 180.02562 * 4 3 2 6 6 C 1.38284 * 119.92910 * 89.99398 * 5 4 3 7 7 C 1.38102 * 120.07730 * 179.97438 * 6 5 4 8 8 C 1.38905 * 119.92398 * 0.28542 * 7 6 5 9 9 N 1.39669 * 120.07711 * 179.72013 * 8 7 6 10 10 C 1.46502 * 120.00681 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46536 * 35.00383 * 10 9 8 12 12 C 1.52998 * 109.47443 * 275.00602 * 10 9 8 13 13 C 1.50700 * 109.47421 * 154.99842 * 10 9 8 14 14 H 1.08001 * 119.99986 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99946 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00140 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99922 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47066 * 59.99908 * 17 15 13 19 19 H 1.48504 * 109.47080 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47258 * 299.99966 * 17 15 13 21 21 C 1.38915 * 119.85130 * 359.39707 * 8 7 6 22 22 C 1.38104 * 119.92213 * 0.62342 * 21 8 7 23 23 H 1.08993 * 109.46954 * 299.99575 * 1 2 3 24 24 H 1.09000 * 109.47174 * 60.00393 * 1 2 3 25 25 H 1.09007 * 109.46545 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47392 * 240.00269 * 2 1 3 27 27 H 1.09005 * 109.47615 * 119.99768 * 2 1 3 28 28 H 1.08996 * 109.47336 * 59.99780 * 3 2 1 29 29 H 1.09000 * 109.46842 * 299.99811 * 3 2 1 30 30 H 1.08998 * 109.47405 * 60.00074 * 4 3 2 31 31 H 1.09005 * 109.47297 * 299.99761 * 4 3 2 32 32 H 1.08000 * 119.96014 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.03497 * 180.02562 * 7 6 5 34 34 H 0.97008 * 120.00083 * 0.02562 * 9 8 7 35 35 H 1.09001 * 109.46529 * 299.99857 * 12 10 9 36 36 H 1.09002 * 109.47293 * 59.99326 * 12 10 9 37 37 H 1.08995 * 109.47245 * 179.97438 * 12 10 9 38 38 H 0.96996 * 119.99891 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.04048 * 180.29804 * 21 8 7 40 40 H 1.08007 * 119.96323 * 179.70078 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3026 3.5132 1.1987 7 6 4.7635 4.8151 1.2029 8 6 4.9900 5.4738 0.0011 9 7 5.4504 6.7924 0.0016 10 6 5.6893 7.4855 -1.2668 11 1 4.9507 7.1640 -2.0012 12 6 7.0930 7.1503 -1.7748 13 6 5.5733 8.9732 -1.0560 14 1 5.3449 9.3634 -0.0752 15 6 5.7587 9.8361 -2.1153 16 7 6.0364 9.3609 -3.3098 17 14 5.6157 11.6801 -1.8539 18 1 6.6226 12.1179 -0.8540 19 1 5.8565 12.3826 -3.1399 20 1 4.2536 12.0059 -1.3600 21 6 4.7638 4.8160 -1.2013 22 6 4.3026 3.5142 -1.1983 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9290 -0.8908 31 1 3.9337 0.9287 0.8892 32 1 4.1220 3.0020 2.1327 33 1 4.9436 5.3218 2.1395 34 1 5.6128 7.2492 0.8419 35 1 7.8315 7.4718 -1.0404 36 1 7.1769 6.0742 -1.9273 37 1 7.2705 7.6656 -2.7187 38 1 6.1672 9.9679 -4.0549 39 1 4.9435 5.3236 -2.1375 40 1 4.1220 3.0037 -2.1328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:59 Heat of formation + Delta-G solvation = -20.085647 kcal Electronic energy + Delta-G solvation = -17263.678109 eV Core-core repulsion = 14655.241694 eV Total energy + Delta-G solvation = -2608.436415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38555 -37.76539 -36.22847 -34.59910 -32.46812 -31.65696 -30.44685 -28.01654 -27.23957 -24.56727 -23.85149 -22.43171 -21.82192 -21.14723 -18.99965 -17.63740 -17.08375 -16.44122 -16.18670 -15.73324 -15.06637 -14.93251 -14.81676 -14.33637 -14.23873 -13.94566 -13.65856 -13.49294 -13.41348 -13.02366 -12.87588 -12.65820 -12.49846 -12.26192 -12.15903 -11.99419 -11.93688 -11.58128 -11.42976 -11.28796 -11.09337 -10.69937 -10.40189 -9.69471 -8.22088 -7.95724 -6.35995 0.67447 0.88213 1.41259 1.42574 1.50558 2.35987 2.97530 3.08000 3.12306 4.00003 4.05598 4.21686 4.25059 4.33483 4.49058 4.53817 4.70196 4.70949 4.82106 4.87283 4.93792 4.94799 5.03011 5.07960 5.10695 5.14011 5.23579 5.29316 5.38650 5.42790 5.47296 5.58792 5.60353 5.64293 5.71875 5.83653 5.96995 6.08581 6.26794 6.55972 6.86042 7.23636 7.37508 8.85206 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038859 B = 0.003838 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.373432 B = 7292.930326 C = 7410.408533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.061 4.061 5 C -0.160 4.160 6 C -0.067 4.067 7 C -0.216 4.216 8 C 0.205 3.795 9 N -0.735 5.735 10 C 0.278 3.722 11 H 0.007 0.993 12 C -0.138 4.138 13 C -0.551 4.551 14 H 0.061 0.939 15 C 0.018 3.982 16 N -0.914 5.914 17 Si 0.967 3.033 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.224 4.224 22 C -0.073 4.073 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.393 0.607 35 H 0.028 0.972 36 H 0.021 0.979 37 H 0.066 0.934 38 H 0.266 0.734 39 H 0.097 0.903 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 -15.532 7.249 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.162 4.162 6 C -0.085 4.085 7 C -0.239 4.239 8 C 0.099 3.901 9 N -0.360 5.360 10 C 0.174 3.826 11 H 0.024 0.976 12 C -0.197 4.197 13 C -0.589 4.589 14 H 0.079 0.921 15 C -0.182 4.182 16 N -0.553 5.553 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.248 4.248 22 C -0.091 4.091 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.227 0.773 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.064 -15.356 6.850 17.875 hybrid contribution 0.199 1.581 -0.089 1.596 sum -5.865 -13.775 6.761 16.427 Atomic orbital electron populations 1.21791 0.95858 1.01898 1.01628 1.21533 0.95905 0.96054 1.02430 1.21593 0.94658 0.97146 1.01576 1.20427 0.95261 0.91217 1.02969 1.19792 1.06090 0.97967 0.92379 1.20958 0.96195 0.93139 0.98254 1.20747 1.10439 0.97061 0.95655 1.18301 0.91976 0.85215 0.94603 1.45236 1.71271 1.10517 1.08944 1.18297 0.92187 0.90476 0.81602 0.97576 1.21993 0.98716 0.97244 1.01744 1.21536 1.49601 0.91694 0.96056 0.92105 1.25706 0.94201 1.03684 0.94638 1.69998 1.47937 1.36566 1.00771 0.85478 0.78783 0.79037 0.77530 1.19373 1.20683 1.19761 1.20767 1.10561 0.97095 0.96335 1.20903 0.96706 0.93005 0.98528 0.92875 0.93254 0.91970 0.91767 0.91266 0.92438 0.93228 0.91170 0.90288 0.84006 0.85532 0.77325 0.95279 0.95993 0.91495 0.92466 0.88528 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.12 -1.85 5.93 30.59 0.18 -1.67 16 3 C -0.11 -2.16 5.20 30.59 0.16 -2.00 16 4 C -0.06 -1.26 5.34 29.85 0.16 -1.10 16 5 C -0.16 -4.46 5.14 -19.84 -0.10 -4.56 16 6 C -0.07 -1.87 9.69 22.25 0.22 -1.66 16 7 C -0.22 -7.13 9.90 22.40 0.22 -6.91 16 8 C 0.21 8.24 6.64 38.21 0.25 8.49 16 9 N -0.73 -32.33 5.24 -322.50 -1.69 -34.02 16 10 C 0.28 14.32 2.25 44.24 0.10 14.42 16 11 H 0.01 0.37 6.50 -2.38 -0.02 0.36 16 12 C -0.14 -6.92 9.19 71.98 0.66 -6.26 16 13 C -0.55 -30.03 8.73 25.60 0.22 -29.81 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 15 C 0.02 0.97 5.30 84.65 0.45 1.42 16 16 N -0.91 -51.93 11.32 21.45 0.24 -51.68 16 17 Si 0.97 42.78 29.54 68.60 2.03 44.80 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C -0.22 -9.02 8.83 22.40 0.20 -8.82 16 22 C -0.07 -2.38 9.69 22.25 0.22 -2.17 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 31 H 0.08 1.38 8.08 -2.38 -0.02 1.36 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.39 16.03 8.55 -92.70 -0.79 15.24 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.02 1.01 7.67 -2.39 -0.02 0.99 16 37 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 38 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.10 4.34 6.09 -2.91 -0.02 4.32 16 40 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -59.01 325.58 4.43 -54.58 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.20 Total: 28.47 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 3.65 Total: -42.15 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.45 Total: -85.70 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -59.01 4.43 -54.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.495 kcal (2) G-P(sol) polarization free energy of solvation -59.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds