Wall clock time and date at job start Mon Mar 30 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47103 * 2 1 4 4 C 1.38236 * 119.99817 * 269.72675 * 3 2 1 5 5 C 1.38229 * 119.99653 * 179.74859 * 4 3 2 6 6 C 1.38231 * 120.00372 * 0.52501 * 5 4 3 7 7 C 1.50694 * 120.00398 * 179.76835 * 6 5 4 8 8 H 1.09003 * 109.47534 * 159.97482 * 7 6 5 9 9 C 1.53000 * 109.47417 * 279.98003 * 7 6 5 10 10 N 1.46906 * 109.46839 * 39.98215 * 7 6 5 11 11 C 1.46902 * 111.00049 * 81.63787 * 10 7 6 12 12 H 1.08997 * 109.46828 * 327.35250 * 11 10 7 13 13 C 1.52997 * 109.47088 * 87.35443 * 11 10 7 14 14 C 1.50703 * 109.46763 * 207.35518 * 11 10 7 15 15 H 1.07995 * 120.00243 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99706 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00093 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99733 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47462 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46902 * 120.00061 * 18 16 14 21 21 H 1.48501 * 109.47153 * 239.99530 * 18 16 14 22 22 C 1.38237 * 119.99847 * 359.74911 * 6 5 4 23 23 C 1.38227 * 119.99969 * 90.00016 * 3 2 1 24 24 H 1.09002 * 109.47095 * 300.00247 * 1 2 3 25 25 H 1.08997 * 109.47142 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47104 * 59.99897 * 1 2 3 27 27 H 1.08999 * 109.47104 * 120.00103 * 2 1 3 28 28 H 1.09002 * 109.46624 * 239.99998 * 2 1 3 29 29 H 1.08001 * 119.99951 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.99852 * 180.29835 * 5 4 3 31 31 H 1.08998 * 109.47290 * 175.85977 * 9 7 6 32 32 H 1.08995 * 109.46831 * 295.86048 * 9 7 6 33 33 H 1.08994 * 109.46875 * 55.86316 * 9 7 6 34 34 H 1.00896 * 111.00039 * 317.67826 * 10 7 6 35 35 H 1.09002 * 109.47027 * 180.28826 * 13 11 10 36 36 H 1.08992 * 109.47673 * 300.29333 * 13 11 10 37 37 H 1.09004 * 109.47360 * 60.29535 * 13 11 10 38 38 H 0.97002 * 120.00238 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.00203 * 179.97438 * 22 6 5 40 40 H 1.08008 * 120.00319 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7239 3.3755 -1.1972 6 6 2.9544 4.0272 -0.0001 7 6 3.4562 5.4481 -0.0001 8 1 3.2456 5.9079 0.9655 9 6 4.9656 5.4560 -0.2503 10 7 2.7800 6.2063 -1.0612 11 6 1.4545 6.6611 -0.6204 12 1 1.0290 5.9290 0.0659 13 6 1.5883 8.0092 0.0905 14 6 0.5515 6.8118 -1.8174 15 1 0.9249 6.5922 -2.8067 16 6 -0.7515 7.2301 -1.6496 17 7 -1.2064 7.4971 -0.4449 18 14 -1.8707 7.4177 -3.1334 19 1 -1.1240 7.0574 -4.3654 20 1 -3.0435 6.5189 -2.9855 21 1 -2.3346 8.8251 -3.2288 22 6 2.7240 3.3756 1.1971 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 2.0927 1.5598 -2.1324 30 1 2.9036 3.8848 -2.1325 31 1 5.3165 6.4853 -0.3235 32 1 5.4733 4.9569 0.5751 33 1 5.1823 4.9313 -1.1807 34 1 2.7123 5.6616 -1.9078 35 1 0.6055 8.3443 0.4221 36 1 2.2457 7.9015 0.9532 37 1 2.0091 8.7426 -0.5974 38 1 -2.1230 7.7918 -0.3268 39 1 2.9044 3.8846 2.1324 40 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038012749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:41 Heat of formation + Delta-G solvation = 4.321871 kcal Electronic energy + Delta-G solvation = -18106.753995 eV Core-core repulsion = 15499.375970 eV Total energy + Delta-G solvation = -2607.378026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.41360 -36.53879 -34.01939 -32.64653 -30.66649 -30.49184 -28.26666 -27.03815 -25.10556 -23.93491 -22.46349 -21.45945 -20.21035 -19.30402 -16.76922 -15.88347 -15.41487 -14.90694 -14.72092 -13.97373 -13.84927 -13.41377 -13.26073 -13.11548 -12.91835 -12.69327 -12.40294 -11.92787 -11.64146 -11.44115 -11.23304 -11.17686 -10.93494 -10.85908 -10.71101 -10.50569 -10.31747 -10.19768 -10.08757 -9.86143 -8.78247 -8.54318 -8.46382 -8.11529 -7.27899 -5.99633 -4.05454 1.71642 1.78514 3.29632 3.37373 3.41286 4.11508 4.42342 4.91305 4.99107 5.22349 5.23943 5.32828 5.34438 5.41051 5.43705 5.62465 5.76406 5.80782 5.84899 5.90342 5.99072 6.07967 6.23628 6.26252 6.32952 6.40676 6.50293 6.60393 6.80955 6.91343 6.92260 7.03066 7.18893 7.29026 7.38963 7.56411 7.80685 7.95395 8.29499 8.41417 8.70104 9.05129 9.60050 11.06815 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.007349 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.378036 B = 3809.219630 C = 4826.777415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.096 4.096 4 C -0.115 4.115 5 C -0.104 4.104 6 C -0.095 4.095 7 C 0.118 3.882 8 H 0.078 0.922 9 C -0.131 4.131 10 N -0.679 5.679 11 C 0.211 3.789 12 H 0.005 0.995 13 C -0.124 4.124 14 C -0.515 4.515 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.113 4.113 23 C -0.119 4.119 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.331 0.669 35 H 0.079 0.921 36 H 0.003 0.997 37 H 0.030 0.970 38 H 0.259 0.741 39 H 0.116 0.884 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 -11.671 2.068 13.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.096 4.096 4 C -0.134 4.134 5 C -0.123 4.123 6 C -0.097 4.097 7 C 0.007 3.993 8 H 0.096 0.904 9 C -0.189 4.189 10 N -0.310 5.310 11 C 0.104 3.896 12 H 0.022 0.978 13 C -0.183 4.183 14 C -0.554 4.554 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.132 4.132 23 C -0.138 4.138 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.098 0.902 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.334 -10.983 2.302 13.406 hybrid contribution -1.341 -0.647 -0.734 1.660 sum 5.993 -11.630 1.568 13.177 Atomic orbital electron populations 1.21757 0.94906 1.01189 1.02634 1.20479 0.96101 0.92994 1.02146 1.19765 1.00400 0.96125 0.93344 1.20908 1.00252 0.95024 0.97167 1.20910 0.99134 0.94324 0.97922 1.20890 0.97991 0.97695 0.93095 1.20636 0.93973 0.87149 0.97567 0.90396 1.21745 0.94704 1.01825 1.00627 1.61003 1.24568 1.40803 1.04643 1.19095 0.82897 0.92665 0.94947 0.97751 1.21724 1.00866 0.98981 0.96682 1.21292 0.95685 1.45310 0.93127 0.92387 1.24897 0.97952 0.95298 0.95777 1.69909 1.16064 1.46075 1.20752 0.86518 0.80619 0.77689 0.83045 1.19782 1.21152 1.20981 1.21007 0.99942 0.94622 0.97624 1.20899 1.00681 0.95073 0.97100 0.92517 0.92800 0.92378 0.91539 0.91473 0.86650 0.86133 0.91871 0.93368 0.93183 0.84991 0.90204 0.97779 0.95039 0.93067 0.86554 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.90 37.16 0.37 -1.33 16 2 C -0.08 -0.92 6.07 -27.88 -0.17 -1.09 16 3 C -0.10 -1.40 5.13 -104.63 -0.54 -1.94 16 4 C -0.12 -1.79 9.70 -39.59 -0.38 -2.18 16 5 C -0.10 -1.79 9.16 -39.59 -0.36 -2.16 16 6 C -0.09 -1.68 4.44 -104.63 -0.46 -2.14 16 7 C 0.12 2.15 2.67 -68.86 -0.18 1.97 16 8 H 0.08 1.50 7.16 -51.93 -0.37 1.13 16 9 C -0.13 -1.99 9.50 37.16 0.35 -1.63 16 10 N -0.68 -14.56 6.02 -102.17 -0.61 -15.18 16 11 C 0.21 5.41 2.40 -68.86 -0.17 5.25 16 12 H 0.00 0.14 7.48 -51.93 -0.39 -0.25 16 13 C -0.12 -3.14 9.20 37.16 0.34 -2.80 16 14 C -0.52 -14.29 8.59 -34.44 -0.30 -14.59 16 15 H 0.06 1.59 7.58 -52.49 -0.40 1.19 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.79 11.32 55.43 0.63 -25.16 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.11 -1.86 9.67 -39.58 -0.38 -2.24 16 23 C -0.12 -1.79 9.70 -39.59 -0.38 -2.17 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.12 2.01 6.50 -52.48 -0.34 1.67 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.33 6.97 5.88 -39.29 -0.23 6.74 16 35 H 0.08 2.20 6.08 -51.93 -0.32 1.88 16 36 H 0.00 0.07 7.56 -51.93 -0.39 -0.32 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 40 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -29.22 323.49 -9.13 -38.36 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.64 Total: 5.94 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -2.36 Total: -25.39 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.01 Total: -40.34 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.22 -9.13 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.680 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds