Wall clock time and date at job start Mon Mar 30 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47103 * 2 1 4 4 C 1.38236 * 119.99817 * 269.72675 * 3 2 1 5 5 C 1.38229 * 119.99653 * 179.74859 * 4 3 2 6 6 C 1.38231 * 120.00372 * 0.52501 * 5 4 3 7 7 C 1.50694 * 120.00398 * 179.76835 * 6 5 4 8 8 H 1.09003 * 109.47534 * 159.97482 * 7 6 5 9 9 C 1.53000 * 109.47417 * 279.98003 * 7 6 5 10 10 N 1.46906 * 109.46839 * 39.98215 * 7 6 5 11 11 C 1.46902 * 111.00049 * 81.63787 * 10 7 6 12 12 H 1.08997 * 109.46828 * 327.35250 * 11 10 7 13 13 C 1.52997 * 109.47088 * 87.35443 * 11 10 7 14 14 C 1.50703 * 109.46763 * 207.35518 * 11 10 7 15 15 H 1.07995 * 120.00243 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99706 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00093 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99733 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47462 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46902 * 120.00061 * 18 16 14 21 21 H 1.48501 * 109.47153 * 239.99530 * 18 16 14 22 22 C 1.38237 * 119.99847 * 359.74911 * 6 5 4 23 23 C 1.38227 * 119.99969 * 90.00016 * 3 2 1 24 24 H 1.09002 * 109.47095 * 300.00247 * 1 2 3 25 25 H 1.08997 * 109.47142 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47104 * 59.99897 * 1 2 3 27 27 H 1.08999 * 109.47104 * 120.00103 * 2 1 3 28 28 H 1.09002 * 109.46624 * 239.99998 * 2 1 3 29 29 H 1.08001 * 119.99951 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.99852 * 180.29835 * 5 4 3 31 31 H 1.08998 * 109.47290 * 175.85977 * 9 7 6 32 32 H 1.08995 * 109.46831 * 295.86048 * 9 7 6 33 33 H 1.08994 * 109.46875 * 55.86316 * 9 7 6 34 34 H 1.00896 * 111.00039 * 317.67826 * 10 7 6 35 35 H 1.09002 * 109.47027 * 180.28826 * 13 11 10 36 36 H 1.08992 * 109.47673 * 300.29333 * 13 11 10 37 37 H 1.09004 * 109.47360 * 60.29535 * 13 11 10 38 38 H 0.97002 * 120.00238 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.00203 * 179.97438 * 22 6 5 40 40 H 1.08008 * 120.00319 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7239 3.3755 -1.1972 6 6 2.9544 4.0272 -0.0001 7 6 3.4562 5.4481 -0.0001 8 1 3.2456 5.9079 0.9655 9 6 4.9656 5.4560 -0.2503 10 7 2.7800 6.2063 -1.0612 11 6 1.4545 6.6611 -0.6204 12 1 1.0290 5.9290 0.0659 13 6 1.5883 8.0092 0.0905 14 6 0.5515 6.8118 -1.8174 15 1 0.9249 6.5922 -2.8067 16 6 -0.7515 7.2301 -1.6496 17 7 -1.2064 7.4971 -0.4449 18 14 -1.8707 7.4177 -3.1334 19 1 -1.1240 7.0574 -4.3654 20 1 -3.0435 6.5189 -2.9855 21 1 -2.3346 8.8251 -3.2288 22 6 2.7240 3.3756 1.1971 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 2.0927 1.5598 -2.1324 30 1 2.9036 3.8848 -2.1325 31 1 5.3165 6.4853 -0.3235 32 1 5.4733 4.9569 0.5751 33 1 5.1823 4.9313 -1.1807 34 1 2.7123 5.6616 -1.9078 35 1 0.6055 8.3443 0.4221 36 1 2.2457 7.9015 0.9532 37 1 2.0091 8.7426 -0.5974 38 1 -2.1230 7.7918 -0.3268 39 1 2.9044 3.8846 2.1324 40 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038012749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:41 Heat of formation + Delta-G solvation = -11.119948 kcal Electronic energy + Delta-G solvation = -18107.423603 eV Core-core repulsion = 15499.375970 eV Total energy + Delta-G solvation = -2608.047633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68352 -38.08576 -35.63739 -34.15507 -32.30838 -31.81678 -29.46216 -28.78578 -27.23277 -25.06318 -23.69919 -22.79726 -21.87369 -20.81612 -18.63694 -17.43509 -16.92780 -16.40267 -16.13291 -15.45668 -15.33669 -14.79994 -14.64559 -14.37132 -14.14999 -13.98719 -13.92063 -13.45555 -13.25871 -12.99114 -12.85000 -12.55754 -12.43315 -12.29219 -12.22795 -12.18437 -11.93092 -11.74028 -11.61952 -11.53397 -10.86687 -10.58549 -9.78358 -9.38279 -9.04584 -8.13259 -6.26707 0.48117 0.54225 1.38630 1.40255 1.51854 2.40231 2.87777 3.15569 3.64647 3.82501 3.92932 4.02589 4.15956 4.26707 4.45237 4.51977 4.54524 4.64089 4.71258 4.74483 4.84433 4.94379 5.03611 5.05049 5.08507 5.09761 5.19188 5.24157 5.25719 5.35266 5.38823 5.48380 5.57856 5.64722 5.74388 5.78562 5.89969 6.17711 6.22363 6.48494 6.78903 7.01945 7.43279 8.92682 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.007349 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.378036 B = 3809.219630 C = 4826.777415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.097 4.097 4 C -0.124 4.124 5 C -0.123 4.123 6 C -0.116 4.116 7 C 0.118 3.882 8 H 0.063 0.937 9 C -0.121 4.121 10 N -0.676 5.676 11 C 0.221 3.779 12 H -0.031 1.031 13 C -0.114 4.114 14 C -0.533 4.533 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.279 1.279 22 C -0.129 4.129 23 C -0.124 4.124 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.332 0.668 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.124 0.876 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -13.237 1.609 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.097 4.097 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.118 4.118 7 C 0.007 3.993 8 H 0.081 0.919 9 C -0.179 4.179 10 N -0.307 5.307 11 C 0.113 3.887 12 H -0.014 1.014 13 C -0.172 4.172 14 C -0.572 4.572 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.205 1.205 22 C -0.147 4.147 23 C -0.142 4.142 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.152 0.848 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.142 0.858 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.622 -12.556 1.843 14.804 hybrid contribution -1.406 -0.219 -0.542 1.523 sum 6.216 -12.775 1.301 14.267 Atomic orbital electron populations 1.21754 0.94928 1.02391 1.01363 1.20544 0.95889 0.91074 1.03887 1.20188 0.99066 0.97665 0.92757 1.21203 0.99844 0.94570 0.98603 1.21021 1.00181 0.95337 0.97621 1.20854 0.99495 0.97431 0.93982 1.20662 0.95579 0.87356 0.95679 0.91916 1.21658 0.92293 1.02163 1.01764 1.60938 1.22145 1.42017 1.05633 1.18816 0.84480 0.91814 0.93617 1.01376 1.21557 0.99748 0.98722 0.97178 1.21607 0.96515 1.45377 0.93666 0.92526 1.25701 0.99416 0.94948 0.98481 1.70037 1.16447 1.46590 1.22637 0.85505 0.78570 0.77717 0.79848 1.18990 1.20797 1.20458 1.21226 1.00339 0.95594 0.97559 1.21239 0.99812 0.94594 0.98506 0.93565 0.90399 0.93878 0.89642 0.89937 0.84800 0.86500 0.91927 0.91328 0.92602 0.84866 0.92625 0.96096 0.95289 0.92960 0.85789 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.90 71.98 0.71 -2.34 16 2 C -0.08 -1.54 6.07 29.85 0.18 -1.36 16 3 C -0.10 -2.65 5.13 -19.87 -0.10 -2.75 16 4 C -0.12 -3.73 9.70 22.27 0.22 -3.51 16 5 C -0.12 -4.22 9.16 22.27 0.20 -4.02 16 6 C -0.12 -4.12 4.44 -19.87 -0.09 -4.21 16 7 C 0.12 4.33 2.67 44.17 0.12 4.45 16 8 H 0.06 2.46 7.16 -2.39 -0.02 2.45 16 9 C -0.12 -3.55 9.50 71.98 0.68 -2.87 16 10 N -0.68 -29.38 6.02 -477.15 -2.87 -32.26 16 11 C 0.22 11.59 2.40 44.17 0.11 11.69 16 12 H -0.03 -1.85 7.48 -2.39 -0.02 -1.86 16 13 C -0.11 -5.86 9.20 71.98 0.66 -5.20 16 14 C -0.53 -29.95 8.59 25.60 0.22 -29.73 16 15 H 0.06 3.12 7.58 -2.91 -0.02 3.10 16 16 C 0.01 0.77 5.30 84.65 0.45 1.21 16 17 N -0.92 -54.07 11.32 21.45 0.24 -53.82 16 18 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.13 -4.18 9.67 22.27 0.22 -3.97 16 23 C -0.12 -3.52 9.70 22.27 0.22 -3.31 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 28 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 29 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 30 H 0.12 3.96 6.50 -2.91 -0.02 3.94 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.33 14.19 5.88 -89.70 -0.53 13.67 16 35 H 0.05 3.13 6.08 -2.39 -0.01 3.12 16 36 H 0.02 0.95 7.56 -2.39 -0.02 0.93 16 37 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.12 3.69 8.04 -2.91 -0.02 3.67 16 40 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -62.62 323.49 3.66 -58.96 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.47 Total: 26.66 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.79 Total: -45.90 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -2.63 Total: -86.08 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.62 3.66 -58.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.841 kcal (2) G-P(sol) polarization free energy of solvation -62.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds