Wall clock time and date at job start Mon Mar 30 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46845 * 2 1 4 4 C 1.38234 * 120.00196 * 90.00215 * 3 2 1 5 5 C 1.38235 * 119.99814 * 179.97438 * 4 3 2 6 6 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00309 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47057 * 19.99708 * 7 6 5 9 9 C 1.53004 * 109.47005 * 260.00219 * 7 6 5 10 10 N 1.46897 * 109.47403 * 140.00233 * 7 6 5 11 11 C 1.46905 * 110.99938 * 205.00397 * 10 7 6 12 12 H 1.08998 * 109.46788 * 324.99410 * 11 10 7 13 13 C 1.52998 * 109.47465 * 84.99801 * 11 10 7 14 14 C 1.50706 * 109.46928 * 204.99821 * 11 10 7 15 15 H 1.08005 * 119.99684 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99892 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99821 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00041 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47172 * 60.00157 * 18 16 14 20 20 H 1.48495 * 109.47098 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47024 * 300.00450 * 18 16 14 22 22 C 1.38243 * 120.00092 * 359.97438 * 6 5 4 23 23 C 1.38234 * 119.99618 * 359.97438 * 22 6 5 24 24 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47302 * 300.00119 * 1 2 3 26 26 H 1.08998 * 109.47012 * 60.00201 * 1 2 3 27 27 H 1.08998 * 109.47302 * 239.99881 * 2 1 3 28 28 H 1.08998 * 109.47012 * 119.99799 * 2 1 3 29 29 H 1.08000 * 119.99516 * 0.24808 * 4 3 2 30 30 H 1.08000 * 119.99297 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47484 * 60.00136 * 9 7 6 32 32 H 1.09001 * 109.46875 * 179.97438 * 9 7 6 33 33 H 1.09000 * 109.47253 * 299.99860 * 9 7 6 34 34 H 1.00900 * 110.99635 * 328.95188 * 10 7 6 35 35 H 1.09005 * 109.46512 * 300.00194 * 13 11 10 36 36 H 1.08996 * 109.47061 * 59.99334 * 13 11 10 37 37 H 1.08999 * 109.47261 * 180.02562 * 13 11 10 38 38 H 0.97002 * 119.99687 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.00235 * 179.97438 * 22 6 5 40 40 H 1.08005 * 119.99804 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7239 3.3757 1.1970 6 6 2.9553 4.0270 -0.0001 7 6 3.4575 5.4478 -0.0002 8 1 3.9092 5.6735 0.9658 9 6 2.2883 6.4020 -0.2519 10 7 4.4608 5.6125 -1.0604 11 6 5.3780 6.7173 -0.7502 12 1 4.8330 7.5081 -0.2348 13 6 6.5065 6.2066 0.1478 14 6 5.9608 7.2605 -2.0295 15 1 5.6784 6.8279 -2.9780 16 6 6.8544 8.3096 -1.9890 17 7 7.1986 8.8360 -0.8339 18 14 7.5774 8.9825 -3.5746 19 1 6.4823 9.4775 -4.4470 20 1 8.5044 10.0994 -3.2611 21 1 8.3205 7.9050 -4.2762 22 6 2.7259 3.3750 -1.1973 23 6 2.2656 2.0715 -1.1972 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0866 1.5620 2.1324 30 1 2.9035 3.8849 2.1324 31 1 1.5437 6.2799 0.5348 32 1 2.6515 7.4297 -0.2515 33 1 1.8365 6.1763 -1.2178 34 1 4.9681 4.7540 -1.2147 35 1 6.0849 5.8137 1.0730 36 1 7.0514 5.4158 -0.3677 37 1 7.1868 7.0265 0.3783 38 1 7.8276 9.5739 -0.8054 39 1 2.9062 3.8839 -2.1326 40 1 2.0860 1.5622 -2.1326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038012750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:44 Heat of formation + Delta-G solvation = 3.949788 kcal Electronic energy + Delta-G solvation = -17691.396025 eV Core-core repulsion = 15084.001865 eV Total energy + Delta-G solvation = -2607.394160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.47761 -36.63303 -34.23403 -32.64513 -30.73119 -30.59052 -28.28153 -26.94035 -25.11861 -24.07947 -22.52733 -21.63770 -20.24236 -19.43354 -16.73854 -15.74706 -15.59416 -15.02924 -14.63594 -14.22596 -13.82102 -13.58648 -13.42989 -13.11985 -12.97196 -12.65087 -12.24423 -12.01160 -11.66351 -11.38391 -11.34516 -11.27510 -11.15359 -10.89818 -10.77503 -10.71102 -10.37183 -10.35743 -10.04925 -9.74748 -8.97680 -8.68753 -8.32735 -8.27193 -7.22048 -5.95551 -3.98582 1.54934 1.63904 3.36348 3.40098 3.43550 3.96693 4.46384 4.76130 4.85309 5.06961 5.18193 5.22967 5.28914 5.35166 5.36447 5.48065 5.67490 5.69183 5.78633 5.87971 5.98689 6.04303 6.04929 6.24302 6.27267 6.38851 6.50455 6.65584 6.72544 6.78010 6.81901 6.87647 6.95612 7.15043 7.25165 7.43037 7.77416 7.92332 8.31567 8.57854 8.65551 9.08370 9.66555 11.11547 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041461 B = 0.004395 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.176884 B = 6369.576167 C = 6559.558728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.095 4.095 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.077 4.077 7 C 0.120 3.880 8 H 0.042 0.958 9 C -0.129 4.129 10 N -0.676 5.676 11 C 0.211 3.789 12 H 0.035 0.965 13 C -0.169 4.169 14 C -0.494 4.494 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.096 4.096 23 C -0.122 4.122 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.327 0.673 35 H 0.004 0.996 36 H 0.027 0.973 37 H 0.088 0.912 38 H 0.260 0.740 39 H 0.133 0.867 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 -13.949 3.355 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.095 4.095 4 C -0.140 4.140 5 C -0.134 4.134 6 C -0.078 4.078 7 C 0.009 3.991 8 H 0.060 0.940 9 C -0.187 4.187 10 N -0.307 5.307 11 C 0.104 3.896 12 H 0.053 0.947 13 C -0.228 4.228 14 C -0.532 4.532 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.114 4.114 23 C -0.140 4.140 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.023 0.977 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.151 0.849 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.158 -13.393 3.027 17.693 hybrid contribution 1.090 0.058 0.005 1.091 sum -10.068 -13.334 3.032 16.981 Atomic orbital electron populations 1.21744 0.95016 1.01313 1.02232 1.20499 0.95960 0.93069 1.02446 1.19810 1.00312 0.96022 0.93381 1.20890 1.01024 0.94940 0.97178 1.21045 0.99968 0.94738 0.97699 1.20206 0.98340 0.96230 0.93017 1.20419 0.94098 0.89594 0.94940 0.94007 1.21735 0.96512 0.99685 1.00765 1.60967 1.18672 1.09315 1.41697 1.19205 0.87715 0.87932 0.94786 0.94706 1.22435 1.02345 1.01241 0.96796 1.21118 1.23892 1.15352 0.92883 0.92020 1.24947 0.96662 0.96741 0.96200 1.69879 1.34634 1.25348 1.23977 0.86574 0.78857 0.78352 0.83656 1.20307 1.21515 1.20410 1.21144 0.97533 0.94074 0.98657 1.21018 1.00633 0.95165 0.97150 0.92721 0.92657 0.92550 0.91299 0.91419 0.86717 0.86491 0.93849 0.91979 0.92412 0.85611 0.97719 0.95416 0.89293 0.93065 0.84918 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.08 -0.78 6.07 -27.88 -0.17 -0.95 16 3 C -0.10 -1.17 5.13 -104.62 -0.54 -1.70 16 4 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 5 C -0.12 -1.66 9.67 -39.59 -0.38 -2.05 16 6 C -0.08 -1.24 4.71 -104.63 -0.49 -1.73 16 7 C 0.12 2.19 2.63 -68.87 -0.18 2.01 16 8 H 0.04 0.81 6.97 -51.93 -0.36 0.45 16 9 C -0.13 -2.24 9.38 37.16 0.35 -1.89 16 10 N -0.68 -14.33 5.43 -102.17 -0.55 -14.89 16 11 C 0.21 5.31 2.38 -68.86 -0.16 5.15 16 12 H 0.04 0.96 7.11 -51.93 -0.37 0.59 16 13 C -0.17 -4.13 8.92 37.16 0.33 -3.80 16 14 C -0.49 -13.69 8.84 -34.44 -0.30 -14.00 16 15 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 16 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 17 N -0.90 -25.86 11.32 55.43 0.63 -25.23 16 18 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.10 -1.45 9.01 -39.58 -0.36 -1.81 16 23 C -0.12 -1.60 9.70 -39.58 -0.38 -1.98 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.18 7.43 -51.93 -0.39 0.79 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.33 6.79 7.73 -39.29 -0.30 6.48 16 35 H 0.00 0.09 7.43 -51.93 -0.39 -0.30 16 36 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.13 2.09 7.72 -52.49 -0.41 1.68 16 40 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -28.41 324.69 -9.17 -37.58 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.71 Total: 5.16 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.40 Total: -24.13 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.07 Total: -40.12 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.41 -9.17 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.533 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds