Wall clock time and date at job start Mon Mar 30 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46845 * 2 1 4 4 C 1.38234 * 120.00196 * 90.00215 * 3 2 1 5 5 C 1.38235 * 119.99814 * 179.97438 * 4 3 2 6 6 C 1.38230 * 120.00326 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00309 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47057 * 19.99708 * 7 6 5 9 9 C 1.53004 * 109.47005 * 260.00219 * 7 6 5 10 10 N 1.46897 * 109.47403 * 140.00233 * 7 6 5 11 11 C 1.46905 * 110.99938 * 205.00397 * 10 7 6 12 12 H 1.08998 * 109.46788 * 324.99410 * 11 10 7 13 13 C 1.52998 * 109.47465 * 84.99801 * 11 10 7 14 14 C 1.50706 * 109.46928 * 204.99821 * 11 10 7 15 15 H 1.08005 * 119.99684 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99892 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99821 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00041 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47172 * 60.00157 * 18 16 14 20 20 H 1.48495 * 109.47098 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47024 * 300.00450 * 18 16 14 22 22 C 1.38243 * 120.00092 * 359.97438 * 6 5 4 23 23 C 1.38234 * 119.99618 * 359.97438 * 22 6 5 24 24 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47302 * 300.00119 * 1 2 3 26 26 H 1.08998 * 109.47012 * 60.00201 * 1 2 3 27 27 H 1.08998 * 109.47302 * 239.99881 * 2 1 3 28 28 H 1.08998 * 109.47012 * 119.99799 * 2 1 3 29 29 H 1.08000 * 119.99516 * 0.24808 * 4 3 2 30 30 H 1.08000 * 119.99297 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47484 * 60.00136 * 9 7 6 32 32 H 1.09001 * 109.46875 * 179.97438 * 9 7 6 33 33 H 1.09000 * 109.47253 * 299.99860 * 9 7 6 34 34 H 1.00900 * 110.99635 * 328.95188 * 10 7 6 35 35 H 1.09005 * 109.46512 * 300.00194 * 13 11 10 36 36 H 1.08996 * 109.47061 * 59.99334 * 13 11 10 37 37 H 1.08999 * 109.47261 * 180.02562 * 13 11 10 38 38 H 0.97002 * 119.99687 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.00235 * 179.97438 * 22 6 5 40 40 H 1.08005 * 119.99804 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7239 3.3757 1.1970 6 6 2.9553 4.0270 -0.0001 7 6 3.4575 5.4478 -0.0002 8 1 3.9092 5.6735 0.9658 9 6 2.2883 6.4020 -0.2519 10 7 4.4608 5.6125 -1.0604 11 6 5.3780 6.7173 -0.7502 12 1 4.8330 7.5081 -0.2348 13 6 6.5065 6.2066 0.1478 14 6 5.9608 7.2605 -2.0295 15 1 5.6784 6.8279 -2.9780 16 6 6.8544 8.3096 -1.9890 17 7 7.1986 8.8360 -0.8339 18 14 7.5774 8.9825 -3.5746 19 1 6.4823 9.4775 -4.4470 20 1 8.5044 10.0994 -3.2611 21 1 8.3205 7.9050 -4.2762 22 6 2.7259 3.3750 -1.1973 23 6 2.2656 2.0715 -1.1972 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0866 1.5620 2.1324 30 1 2.9035 3.8849 2.1324 31 1 1.5437 6.2799 0.5348 32 1 2.6515 7.4297 -0.2515 33 1 1.8365 6.1763 -1.2178 34 1 4.9681 4.7540 -1.2147 35 1 6.0849 5.8137 1.0730 36 1 7.0514 5.4158 -0.3677 37 1 7.1868 7.0265 0.3783 38 1 7.8276 9.5739 -0.8054 39 1 2.9062 3.8839 -2.1326 40 1 2.0860 1.5622 -2.1326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038012750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:44 Heat of formation + Delta-G solvation = -10.613777 kcal Electronic energy + Delta-G solvation = -17692.027549 eV Core-core repulsion = 15084.001865 eV Total energy + Delta-G solvation = -2608.025684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60446 -38.18375 -35.66234 -34.18719 -32.26411 -31.77067 -29.39784 -28.70289 -27.23939 -25.11025 -23.61428 -22.94179 -21.75396 -20.87859 -18.56443 -17.21694 -16.93314 -16.47169 -16.14150 -15.45406 -15.10381 -14.94867 -14.47838 -14.39110 -14.26584 -14.02202 -13.72741 -13.33123 -13.25540 -12.99395 -12.87705 -12.78183 -12.42752 -12.31975 -12.26876 -12.14646 -11.92483 -11.86396 -11.58603 -11.36568 -11.03206 -10.47181 -9.75411 -9.36962 -8.98299 -8.08780 -6.19768 0.46848 0.57075 1.43533 1.45327 1.53033 2.44622 2.89189 3.19549 3.58447 3.80854 3.99783 4.03614 4.21756 4.32144 4.46287 4.54836 4.59315 4.65571 4.72303 4.75553 4.77921 4.84140 4.91811 4.97333 5.11193 5.12777 5.15472 5.22498 5.26516 5.35286 5.42283 5.43548 5.57853 5.68855 5.76237 5.79076 5.88720 6.18762 6.28922 6.66525 6.83007 6.95044 7.50059 8.96810 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041461 B = 0.004395 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.176884 B = 6369.576167 C = 6559.558728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.096 4.096 7 C 0.122 3.878 8 H 0.029 0.971 9 C -0.123 4.123 10 N -0.675 5.675 11 C 0.218 3.782 12 H 0.005 0.995 13 C -0.156 4.156 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.108 4.108 23 C -0.124 4.124 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.329 0.671 35 H 0.021 0.979 36 H 0.029 0.971 37 H 0.063 0.937 38 H 0.261 0.739 39 H 0.120 0.880 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 -15.972 3.222 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.096 4.096 7 C 0.013 3.987 8 H 0.047 0.953 9 C -0.181 4.181 10 N -0.305 5.305 11 C 0.109 3.891 12 H 0.023 0.977 13 C -0.215 4.215 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.190 4.190 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.126 4.126 23 C -0.142 4.142 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.986 -15.429 2.895 19.751 hybrid contribution 1.276 0.611 0.087 1.417 sum -10.710 -14.818 2.982 18.525 Atomic orbital electron populations 1.21730 0.94174 1.02389 1.01833 1.20572 0.96553 0.91123 1.03615 1.20200 0.98699 0.97358 0.92773 1.21198 0.99972 0.94237 0.98573 1.21184 1.00111 0.95611 0.97279 1.19975 1.00455 0.94985 0.94215 1.20384 0.93338 0.91854 0.93168 0.95269 1.21674 0.96759 0.97958 1.01682 1.60839 1.18138 1.08385 1.43129 1.18945 0.88057 0.88419 0.93672 0.97741 1.22247 1.01586 1.00219 0.97471 1.21421 1.24392 1.15936 0.93524 0.92687 1.25721 0.96982 0.96963 0.99318 1.70009 1.34977 1.25615 1.25814 0.85570 0.78124 0.77795 0.79853 1.19876 1.21033 1.19673 1.21100 0.98590 0.95132 0.97811 1.21242 1.00008 0.94365 0.98599 0.90963 0.92910 0.93131 0.90363 0.90108 0.84168 0.85817 0.91410 0.94451 0.92448 0.85349 0.96005 0.95190 0.91868 0.93035 0.86236 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.08 -1.25 6.07 29.85 0.18 -1.07 16 3 C -0.09 -1.96 5.13 -19.86 -0.10 -2.07 16 4 C -0.12 -2.78 9.70 22.27 0.22 -2.56 16 5 C -0.12 -3.36 9.67 22.27 0.22 -3.15 16 6 C -0.10 -3.02 4.71 -19.87 -0.09 -3.11 16 7 C 0.12 4.55 2.63 44.17 0.12 4.66 16 8 H 0.03 1.15 6.97 -2.39 -0.02 1.14 16 9 C -0.12 -4.34 9.38 71.98 0.67 -3.67 16 10 N -0.67 -29.27 5.43 -477.15 -2.59 -31.85 16 11 C 0.22 11.27 2.38 44.17 0.11 11.37 16 12 H 0.00 0.27 7.11 -2.39 -0.02 0.25 16 13 C -0.16 -7.76 8.92 71.98 0.64 -7.12 16 14 C -0.51 -29.07 8.84 25.60 0.23 -28.84 16 15 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 16 C 0.01 0.46 5.30 84.65 0.45 0.90 16 17 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 18 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 C -0.11 -3.21 9.01 22.27 0.20 -3.01 16 23 C -0.12 -3.04 9.70 22.27 0.22 -2.82 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 28 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 29 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.12 3.12 8.04 -2.91 -0.02 3.10 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.47 7.43 -2.39 -0.02 1.45 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.33 13.88 7.73 -89.69 -0.69 13.19 16 35 H 0.02 0.96 7.43 -2.38 -0.02 0.94 16 36 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 37 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 38 H 0.26 14.56 8.31 -92.71 -0.77 13.78 16 39 H 0.12 3.80 7.72 -2.91 -0.02 3.78 16 40 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -61.05 324.69 3.74 -57.31 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.30 Total: 23.53 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 3.76 Total: -41.75 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -2.35 Total: -85.72 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -61.05 3.74 -57.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.696 kcal (2) G-P(sol) polarization free energy of solvation -61.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds