Wall clock time and date at job start Mon Mar 30 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 H 1.08999 * 109.47507 * 160.02121 * 7 6 5 9 9 C 1.52996 * 109.47298 * 280.02427 * 7 6 5 10 10 N 1.46901 * 109.47008 * 40.02510 * 7 6 5 11 11 C 1.46901 * 111.00103 * 154.99804 * 10 7 6 12 12 H 1.08997 * 109.46896 * 35.00020 * 11 10 7 13 13 C 1.52996 * 109.47085 * 274.99769 * 11 10 7 14 14 C 1.50707 * 109.47027 * 154.99647 * 11 10 7 15 15 H 1.08000 * 119.99588 * 0.02562 * 14 11 10 16 16 C 1.37869 * 119.99928 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00326 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99934 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47195 * 89.99897 * 18 16 14 20 20 H 1.48500 * 109.46819 * 210.00086 * 18 16 14 21 21 H 1.48499 * 109.46866 * 329.99636 * 18 16 14 22 22 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 23 23 C 1.38230 * 119.99880 * 359.95582 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 31 31 H 1.09004 * 109.47374 * 179.97438 * 9 7 6 32 32 H 1.09004 * 109.47160 * 299.99575 * 9 7 6 33 33 H 1.08998 * 109.47561 * 59.99687 * 9 7 6 34 34 H 1.00898 * 110.99658 * 278.95487 * 10 7 6 35 35 H 1.08997 * 109.47458 * 299.99907 * 13 11 10 36 36 H 1.09000 * 109.46994 * 60.00336 * 13 11 10 37 37 H 1.09008 * 109.46713 * 179.97438 * 13 11 10 38 38 H 0.96995 * 120.00153 * 179.97438 * 17 16 14 39 39 H 1.08008 * 119.99983 * 179.97438 * 22 6 5 40 40 H 1.08007 * 119.99843 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 1 3.2465 5.9077 0.9657 9 6 4.9660 5.4553 -0.2505 10 7 2.7805 6.2065 -1.0608 11 6 2.7613 7.6423 -0.7510 12 1 3.6818 7.9149 -0.2349 13 6 1.5618 7.9545 0.1460 14 6 2.6504 8.4308 -2.0306 15 1 2.5989 7.9166 -2.9789 16 6 2.6147 9.8085 -1.9904 17 7 2.6769 10.4346 -0.8355 18 14 2.4765 10.7858 -3.5763 19 1 1.0439 11.0058 -3.8990 20 1 3.1535 12.0970 -3.4102 21 1 3.1226 10.0316 -4.6804 22 6 2.7240 3.3755 1.1972 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1324 31 1 5.3293 6.4831 -0.2509 32 1 5.4677 4.8926 0.5368 33 1 5.1763 4.9956 -1.2161 34 1 3.2104 6.0357 -1.9575 35 1 0.6413 7.6818 -0.3701 36 1 1.6421 7.3842 1.0715 37 1 1.5479 9.0199 0.3762 38 1 2.6521 11.4038 -0.8073 39 1 2.9041 3.8846 2.1326 40 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038012751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:47 Heat of formation + Delta-G solvation = 2.859768 kcal Electronic energy + Delta-G solvation = -17704.528398 eV Core-core repulsion = 15097.086971 eV Total energy + Delta-G solvation = -2607.441427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.37935 -36.64765 -34.18890 -32.71494 -30.65065 -30.50220 -28.30834 -26.88957 -25.18107 -24.08863 -22.46694 -21.69407 -20.16240 -19.33387 -16.84015 -15.74143 -15.46686 -14.90515 -14.74265 -13.99942 -13.90910 -13.56482 -13.32545 -13.14703 -12.99049 -12.68884 -12.43997 -12.15114 -11.68769 -11.44021 -11.35043 -11.23359 -10.95482 -10.85694 -10.72356 -10.54075 -10.34908 -10.30546 -10.11499 -9.85022 -8.83105 -8.60452 -8.47579 -8.17024 -7.24306 -6.02258 -4.08527 1.66015 1.72797 3.30037 3.36439 3.39213 4.05357 4.40551 4.83659 4.91379 5.10362 5.26272 5.29148 5.30557 5.35035 5.47447 5.54062 5.67782 5.75266 5.76972 5.82099 5.87142 6.02347 6.12645 6.17290 6.29131 6.36727 6.43258 6.55041 6.76508 6.85109 6.91908 7.05537 7.17779 7.26066 7.33103 7.54211 7.78835 7.90896 8.28212 8.40636 8.67881 9.02260 9.57428 11.04067 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035515 B = 0.004522 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.213615 B = 6190.808236 C = 6373.538030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.121 4.121 5 C -0.094 4.094 6 C -0.053 4.053 7 C 0.117 3.883 8 H 0.079 0.921 9 C -0.172 4.172 10 N -0.679 5.679 11 C 0.212 3.788 12 H 0.003 0.997 13 C -0.124 4.124 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.118 4.118 23 C -0.121 4.121 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.330 0.670 35 H 0.031 0.969 36 H 0.003 0.997 37 H 0.080 0.920 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 -16.783 2.695 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.139 4.139 5 C -0.112 4.112 6 C -0.054 4.054 7 C 0.006 3.994 8 H 0.097 0.903 9 C -0.231 4.231 10 N -0.310 5.310 11 C 0.105 3.895 12 H 0.021 0.979 13 C -0.183 4.183 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.137 4.137 23 C -0.139 4.139 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.353 -16.678 3.021 16.953 hybrid contribution 0.780 0.927 -0.940 1.533 sum 0.427 -15.751 2.080 15.894 Atomic orbital electron populations 1.21750 0.95017 1.01216 1.02399 1.20477 0.96003 0.93104 1.02219 1.19756 1.00736 0.96063 0.93377 1.20960 1.00758 0.95132 0.97078 1.20940 0.98373 0.93707 0.98215 1.20028 0.96977 0.95593 0.92804 1.20465 0.90931 0.90121 0.97859 0.90295 1.22453 0.97257 1.02173 1.01199 1.60837 1.55961 1.11151 1.03021 1.19109 0.93839 0.81248 0.95334 0.97930 1.21724 0.98605 1.02104 0.95823 1.21254 1.50634 0.91190 0.92501 0.92284 1.24908 0.95063 0.97754 0.96241 1.69896 1.50494 1.08511 1.23986 0.86534 0.78190 0.79314 0.83567 1.20641 1.21307 1.19958 1.20990 1.00309 0.94744 0.97657 1.20864 1.00980 0.94996 0.97087 0.92491 0.92586 0.92808 0.91534 0.91468 0.86761 0.86046 0.91860 0.93146 0.92851 0.85180 0.95022 0.97788 0.90156 0.92954 0.86552 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.00 16 2 C -0.08 -0.80 6.06 -27.89 -0.17 -0.97 16 3 C -0.10 -1.27 5.13 -104.63 -0.54 -1.81 16 4 C -0.12 -1.66 9.70 -39.58 -0.38 -2.04 16 5 C -0.09 -1.46 9.32 -39.59 -0.37 -1.83 16 6 C -0.05 -0.87 4.96 -104.62 -0.52 -1.39 16 7 C 0.12 2.13 2.60 -68.87 -0.18 1.95 16 8 H 0.08 1.52 6.98 -51.93 -0.36 1.16 16 9 C -0.17 -2.82 9.12 37.16 0.34 -2.48 16 10 N -0.68 -14.40 5.51 -102.17 -0.56 -14.97 16 11 C 0.21 5.34 2.41 -68.86 -0.17 5.17 16 12 H 0.00 0.08 7.11 -51.93 -0.37 -0.29 16 13 C -0.12 -3.14 9.17 37.16 0.34 -2.80 16 14 C -0.52 -14.13 8.59 -34.44 -0.30 -14.43 16 15 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 C -0.12 -1.76 9.67 -39.58 -0.38 -2.14 16 23 C -0.12 -1.60 9.70 -39.59 -0.38 -1.99 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 30 H 0.12 1.88 7.25 -52.49 -0.38 1.49 16 31 H 0.06 1.14 7.43 -51.93 -0.39 0.75 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.33 6.83 7.31 -39.29 -0.29 6.54 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.00 0.07 7.43 -51.93 -0.39 -0.31 16 37 H 0.08 2.19 6.07 -51.92 -0.32 1.88 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 39 H 0.12 1.57 8.04 -52.48 -0.42 1.15 16 40 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -28.47 324.00 -9.17 -37.64 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.66 Total: 5.13 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -2.43 Total: -24.14 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.07 Total: -39.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.47 -9.17 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.502 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds