Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 H 1.08999 * 109.47507 * 160.02121 * 7 6 5 9 9 C 1.52996 * 109.47298 * 280.02427 * 7 6 5 10 10 N 1.46901 * 109.47008 * 40.02510 * 7 6 5 11 11 C 1.46901 * 111.00103 * 154.99804 * 10 7 6 12 12 H 1.08997 * 109.46896 * 35.00020 * 11 10 7 13 13 C 1.52996 * 109.47085 * 274.99769 * 11 10 7 14 14 C 1.50707 * 109.47027 * 154.99647 * 11 10 7 15 15 H 1.08000 * 119.99588 * 0.02562 * 14 11 10 16 16 C 1.37869 * 119.99928 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00326 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99934 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47195 * 89.99897 * 18 16 14 20 20 H 1.48500 * 109.46819 * 210.00086 * 18 16 14 21 21 H 1.48499 * 109.46866 * 329.99636 * 18 16 14 22 22 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 23 23 C 1.38230 * 119.99880 * 359.95582 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 31 31 H 1.09004 * 109.47374 * 179.97438 * 9 7 6 32 32 H 1.09004 * 109.47160 * 299.99575 * 9 7 6 33 33 H 1.08998 * 109.47561 * 59.99687 * 9 7 6 34 34 H 1.00898 * 110.99658 * 278.95487 * 10 7 6 35 35 H 1.08997 * 109.47458 * 299.99907 * 13 11 10 36 36 H 1.09000 * 109.46994 * 60.00336 * 13 11 10 37 37 H 1.09008 * 109.46713 * 179.97438 * 13 11 10 38 38 H 0.96995 * 120.00153 * 179.97438 * 17 16 14 39 39 H 1.08008 * 119.99983 * 179.97438 * 22 6 5 40 40 H 1.08007 * 119.99843 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 1 3.2465 5.9077 0.9657 9 6 4.9660 5.4553 -0.2505 10 7 2.7805 6.2065 -1.0608 11 6 2.7613 7.6423 -0.7510 12 1 3.6818 7.9149 -0.2349 13 6 1.5618 7.9545 0.1460 14 6 2.6504 8.4308 -2.0306 15 1 2.5989 7.9166 -2.9789 16 6 2.6147 9.8085 -1.9904 17 7 2.6769 10.4346 -0.8355 18 14 2.4765 10.7858 -3.5763 19 1 1.0439 11.0058 -3.8990 20 1 3.1535 12.0970 -3.4102 21 1 3.1226 10.0316 -4.6804 22 6 2.7240 3.3755 1.1972 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1324 31 1 5.3293 6.4831 -0.2509 32 1 5.4677 4.8926 0.5368 33 1 5.1763 4.9956 -1.2161 34 1 3.2104 6.0357 -1.9575 35 1 0.6413 7.6818 -0.3701 36 1 1.6421 7.3842 1.0715 37 1 1.5479 9.0199 0.3762 38 1 2.6521 11.4038 -0.8073 39 1 2.9041 3.8846 2.1326 40 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038012751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = -11.717690 kcal Electronic energy + Delta-G solvation = -17705.160524 eV Core-core repulsion = 15097.086971 eV Total energy + Delta-G solvation = -2608.073553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52849 -38.19823 -35.65653 -34.22912 -32.19374 -31.72728 -29.50229 -28.59469 -27.27465 -25.16367 -23.58211 -22.96675 -21.66684 -20.84331 -18.69056 -17.20414 -16.83972 -16.33243 -16.07895 -15.59964 -15.26794 -14.72040 -14.52703 -14.42865 -14.15589 -13.97213 -13.92374 -13.55246 -13.37246 -12.87862 -12.79697 -12.55144 -12.46555 -12.30721 -12.26343 -12.19052 -11.91907 -11.84899 -11.55112 -11.41705 -10.88738 -10.57386 -9.70392 -9.31680 -8.98789 -8.13003 -6.26864 0.54739 0.62557 1.41967 1.43088 1.52972 2.41493 2.93545 3.15721 3.63120 3.92139 4.00683 4.09473 4.24018 4.25761 4.40981 4.44548 4.58550 4.66391 4.73605 4.79397 4.82113 4.86137 4.94129 5.06979 5.12172 5.13389 5.17444 5.23739 5.27000 5.33747 5.44113 5.47771 5.62877 5.69825 5.81947 5.84677 5.91101 6.21846 6.24277 6.50129 6.79093 7.01510 7.43539 8.92760 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035515 B = 0.004522 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.213615 B = 6190.808236 C = 6373.538030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.096 4.096 4 C -0.126 4.126 5 C -0.109 4.109 6 C -0.074 4.074 7 C 0.120 3.880 8 H 0.062 0.938 9 C -0.163 4.163 10 N -0.677 5.677 11 C 0.218 3.782 12 H -0.025 1.025 13 C -0.112 4.112 14 C -0.536 4.536 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.962 3.038 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.128 4.128 23 C -0.122 4.122 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.332 0.668 35 H 0.024 0.976 36 H 0.018 0.982 37 H 0.057 0.943 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 -18.831 2.279 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.096 4.096 4 C -0.144 4.144 5 C -0.127 4.127 6 C -0.075 4.075 7 C 0.009 3.991 8 H 0.081 0.919 9 C -0.222 4.222 10 N -0.308 5.308 11 C 0.110 3.890 12 H -0.008 1.008 13 C -0.171 4.171 14 C -0.574 4.574 15 H 0.077 0.923 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.787 3.213 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.147 4.147 23 C -0.140 4.140 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.654 -18.748 2.606 18.940 hybrid contribution 0.864 1.465 -0.759 1.863 sum 0.210 -17.283 1.847 17.383 Atomic orbital electron populations 1.21743 0.94586 1.02313 1.01652 1.20545 0.96218 0.91203 1.03646 1.20161 0.99183 0.97459 0.92800 1.21210 1.00173 0.94455 0.98514 1.20990 0.99318 0.94759 0.97645 1.19865 0.99087 0.94540 0.93989 1.20430 0.91837 0.90959 0.95837 0.91941 1.22338 0.96235 1.01126 1.02461 1.60742 1.57009 1.08975 1.04042 1.18879 0.92339 0.83447 0.94352 1.00751 1.21552 0.98298 1.00760 0.96475 1.21577 1.50752 0.91898 0.93197 0.92331 1.25715 0.94644 0.98782 0.99407 1.70023 1.51027 1.08768 1.25930 0.85502 0.78194 0.77804 0.79791 1.20267 1.20906 1.19120 1.21158 1.00500 0.95673 0.97350 1.21178 0.99991 0.94357 0.98489 0.93427 0.93170 0.90846 0.89982 0.90248 0.84844 0.86704 0.94075 0.91059 0.92004 0.84969 0.95719 0.96323 0.92414 0.92873 0.85861 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.89 71.98 0.71 -1.59 16 2 C -0.08 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.10 -2.21 5.13 -19.87 -0.10 -2.31 16 4 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 5 C -0.11 -3.31 9.32 22.27 0.21 -3.10 16 6 C -0.07 -2.40 4.96 -19.86 -0.10 -2.50 16 7 C 0.12 4.41 2.60 44.17 0.11 4.52 16 8 H 0.06 2.47 6.98 -2.39 -0.02 2.46 16 9 C -0.16 -5.39 9.12 71.98 0.66 -4.73 16 10 N -0.68 -29.30 5.51 -477.16 -2.63 -31.92 16 11 C 0.22 11.30 2.41 44.17 0.11 11.40 16 12 H -0.03 -1.42 7.11 -2.39 -0.02 -1.43 16 13 C -0.11 -5.81 9.17 71.98 0.66 -5.15 16 14 C -0.54 -29.73 8.59 25.60 0.22 -29.51 16 15 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -53.37 11.32 21.44 0.24 -53.12 16 18 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.13 -3.65 9.67 22.27 0.22 -3.44 16 23 C -0.12 -2.94 9.70 22.27 0.22 -2.72 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 28 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 29 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.11 3.54 7.25 -2.91 -0.02 3.52 16 31 H 0.04 1.52 7.43 -2.38 -0.02 1.50 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 34 H 0.33 14.00 7.31 -89.70 -0.66 13.34 16 35 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.02 0.85 7.43 -2.39 -0.02 0.84 16 37 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 38 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.12 3.23 8.04 -2.91 -0.02 3.20 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -60.93 324.00 3.74 -57.19 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.34 Total: 24.08 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 3.76 Total: -42.02 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -2.38 Total: -85.05 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -60.93 3.74 -57.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.471 kcal (2) G-P(sol) polarization free energy of solvation -60.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds