Wall clock time and date at job start Mon Mar 30 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46847 * 2 1 4 4 C 1.38238 * 119.99882 * 269.72519 * 3 2 1 5 5 C 1.38232 * 120.00107 * 179.78611 * 4 3 2 6 6 C 1.38234 * 119.99711 * 0.44561 * 5 4 3 7 7 C 1.50705 * 120.00065 * 179.83300 * 6 5 4 8 8 H 1.08997 * 109.47371 * 199.97576 * 7 6 5 9 9 C 1.52994 * 109.47173 * 79.97485 * 7 6 5 10 10 N 1.46906 * 109.46946 * 319.97635 * 7 6 5 11 11 C 1.46905 * 110.99890 * 276.84969 * 10 7 6 12 12 H 1.09004 * 109.46944 * 36.41527 * 11 10 7 13 13 C 1.53004 * 109.46766 * 276.41929 * 11 10 7 14 14 C 1.50693 * 109.46743 * 156.41967 * 11 10 7 15 15 H 1.07998 * 120.00546 * 5.56090 * 14 11 10 16 16 C 1.37885 * 119.99371 * 185.56276 * 14 11 10 17 17 N 1.31509 * 120.00289 * 9.37464 * 16 14 11 18 18 Si 1.86801 * 119.99531 * 189.36873 * 16 14 11 19 19 H 1.48494 * 109.47133 * 94.99812 * 18 16 14 20 20 H 1.48506 * 109.47243 * 214.99277 * 18 16 14 21 21 H 1.48500 * 109.47654 * 334.99218 * 18 16 14 22 22 C 1.38237 * 120.00400 * 359.80995 * 6 5 4 23 23 C 1.38231 * 120.00165 * 89.99996 * 3 2 1 24 24 H 1.09000 * 109.47147 * 60.00488 * 1 2 3 25 25 H 1.08998 * 109.47494 * 300.00064 * 1 2 3 26 26 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47147 * 119.99512 * 2 1 3 28 28 H 1.08998 * 109.47494 * 239.99936 * 2 1 3 29 29 H 1.07998 * 120.00079 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.00491 * 180.27268 * 5 4 3 31 31 H 1.09002 * 109.47193 * 175.02652 * 9 7 6 32 32 H 1.08999 * 109.47289 * 295.03038 * 9 7 6 33 33 H 1.08997 * 109.47346 * 55.02494 * 9 7 6 34 34 H 1.00899 * 110.99825 * 152.89445 * 10 7 6 35 35 H 1.08999 * 109.46945 * 303.78846 * 13 11 10 36 36 H 1.08993 * 109.47243 * 63.78690 * 13 11 10 37 37 H 1.08998 * 109.46659 * 183.78959 * 13 11 10 38 38 H 0.97000 * 120.00202 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.00308 * 180.02562 * 22 6 5 40 40 H 1.08005 * 120.00053 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7246 3.3754 -1.1973 6 6 2.9541 4.0273 -0.0001 7 6 3.4553 5.4486 -0.0001 8 1 3.9070 5.6746 0.9658 9 6 2.2855 6.4020 -0.2517 10 7 4.4586 5.6139 -1.0605 11 6 5.7830 5.1694 -0.6061 12 1 5.6717 4.3004 0.0425 13 6 6.4625 6.3003 0.1686 14 6 6.6258 4.8009 -1.7997 15 1 6.2522 4.9725 -2.7983 16 6 7.8742 4.2447 -1.6167 17 7 8.2556 3.8655 -0.4166 18 14 9.0234 4.0296 -3.0736 19 1 9.9434 5.1925 -3.1542 20 1 9.8138 2.7843 -2.9010 21 1 8.2269 3.9410 -4.3237 22 6 2.7234 3.3759 1.1971 23 6 2.2627 2.0725 1.1971 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0919 1.5601 -2.1325 30 1 2.9046 3.8845 -2.1326 31 1 2.6310 7.4321 -0.1642 32 1 1.8899 6.2353 -1.2536 33 1 1.5021 6.2178 0.4834 34 1 4.4890 6.5693 -1.3836 35 1 6.5130 7.1907 -0.4580 36 1 5.8877 6.5212 1.0680 37 1 7.4708 5.9948 0.4477 38 1 9.1340 3.4745 -0.2878 39 1 2.9023 3.8854 2.1324 40 1 2.0823 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038012752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:49 Heat of formation + Delta-G solvation = 3.662557 kcal Electronic energy + Delta-G solvation = -18004.396686 eV Core-core repulsion = 15396.990070 eV Total energy + Delta-G solvation = -2607.406616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.18833 -36.56429 -34.02055 -32.64580 -30.68659 -30.38389 -28.31897 -26.83281 -25.04266 -23.97394 -22.20555 -21.44558 -20.34541 -19.45862 -16.29594 -15.78025 -15.42137 -14.78886 -14.61653 -14.15946 -13.67877 -13.54816 -13.26432 -13.17903 -12.74881 -12.34756 -12.24356 -12.12228 -11.65285 -11.52602 -11.27902 -11.17001 -11.05993 -10.87723 -10.72230 -10.49862 -10.35208 -10.21369 -10.13252 -9.74076 -8.98986 -8.35576 -8.28172 -7.96382 -7.26031 -5.95561 -3.94643 1.86549 1.98084 3.34897 3.41940 3.45916 4.27363 4.48458 4.99411 5.06443 5.15917 5.37079 5.38446 5.42730 5.49611 5.54334 5.70685 5.72618 5.80090 5.89114 5.91926 6.00522 6.15927 6.22654 6.25099 6.30721 6.48164 6.55519 6.64676 6.66179 6.77347 6.95977 7.07075 7.09574 7.22893 7.47009 7.56797 7.64539 7.93345 8.27134 8.59766 8.66585 9.11357 9.68517 11.13877 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.006383 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.182010 B = 4385.387648 C = 5151.156018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.096 4.096 4 C -0.126 4.126 5 C -0.073 4.073 6 C -0.060 4.060 7 C 0.117 3.883 8 H 0.042 0.958 9 C -0.145 4.145 10 N -0.676 5.676 11 C 0.211 3.789 12 H 0.042 0.958 13 C -0.163 4.163 14 C -0.494 4.494 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.274 1.274 22 C -0.118 4.118 23 C -0.125 4.125 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.326 0.674 35 H 0.029 0.971 36 H 0.009 0.991 37 H 0.070 0.930 38 H 0.259 0.741 39 H 0.112 0.888 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.622 -2.032 2.260 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.144 4.144 5 C -0.091 4.091 6 C -0.061 4.061 7 C 0.007 3.993 8 H 0.060 0.940 9 C -0.202 4.202 10 N -0.306 5.306 11 C 0.103 3.897 12 H 0.060 0.940 13 C -0.222 4.222 14 C -0.533 4.533 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.199 1.199 22 C -0.137 4.137 23 C -0.143 4.143 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.048 0.952 36 H 0.028 0.972 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.619 -2.717 2.044 14.037 hybrid contribution 1.216 0.562 -0.002 1.340 sum -12.403 -2.155 2.042 12.753 Atomic orbital electron populations 1.21735 0.95254 1.01092 1.02046 1.20484 0.95689 0.93366 1.02414 1.19732 1.00629 0.95766 0.93433 1.20987 1.01095 0.95336 0.96946 1.21004 0.95638 0.93796 0.98687 1.19871 0.97319 0.96054 0.92820 1.20349 0.92798 0.91042 0.95123 0.94043 1.21915 0.97899 0.98302 1.02112 1.60827 1.08225 1.26504 1.35063 1.19197 0.82830 0.92801 0.94853 0.93970 1.22390 1.03031 0.99437 0.97391 1.21084 0.99554 1.39782 0.92840 0.92073 1.24931 0.98315 0.95391 0.95658 1.69975 1.20099 1.41882 1.21417 0.86595 0.80983 0.77308 0.83190 1.20939 1.21483 1.19866 1.20952 1.00367 0.94880 0.97498 1.20791 1.01639 0.94934 0.96983 0.92658 0.92770 0.92900 0.91508 0.91367 0.86887 0.85229 0.92902 0.91933 0.92763 0.85638 0.95231 0.97244 0.91087 0.93176 0.86959 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 37.16 0.37 -1.11 16 2 C -0.08 -1.00 6.07 -27.88 -0.17 -1.17 16 3 C -0.10 -1.46 5.13 -104.62 -0.54 -2.00 16 4 C -0.13 -2.07 9.70 -39.58 -0.38 -2.45 16 5 C -0.07 -1.33 9.32 -39.58 -0.37 -1.70 16 6 C -0.06 -1.10 4.50 -104.62 -0.47 -1.57 16 7 C 0.12 2.11 2.65 -68.86 -0.18 1.93 16 8 H 0.04 0.79 6.91 -51.93 -0.36 0.43 16 9 C -0.14 -2.07 9.17 37.15 0.34 -1.73 16 10 N -0.68 -14.04 5.27 -102.16 -0.54 -14.58 16 11 C 0.21 5.30 2.26 -68.86 -0.16 5.14 16 12 H 0.04 1.21 7.52 -51.93 -0.39 0.82 16 13 C -0.16 -3.87 9.03 37.16 0.34 -3.54 16 14 C -0.49 -13.72 8.76 -34.44 -0.30 -14.02 16 15 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 16 C 0.06 1.63 5.17 -17.82 -0.09 1.54 16 17 N -0.89 -26.24 12.16 55.43 0.67 -25.57 16 18 Si 0.89 21.76 29.55 -169.99 -5.02 16.74 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 22 C -0.12 -2.01 9.67 -39.58 -0.38 -2.40 16 23 C -0.13 -1.96 9.70 -39.58 -0.38 -2.34 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.13 2.42 7.72 -52.49 -0.41 2.02 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.33 6.35 8.11 -39.29 -0.32 6.03 16 35 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.01 0.19 7.36 -51.93 -0.38 -0.19 16 37 H 0.07 1.87 6.83 -51.93 -0.35 1.52 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.11 1.73 8.04 -52.49 -0.42 1.31 16 40 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -29.32 327.17 -9.16 -38.48 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.82 Total: 5.40 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -2.39 Total: -25.40 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.14 Total: -40.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.32 -9.16 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.146 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds