Wall clock time and date at job start Mon Mar 30 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46847 * 2 1 4 4 C 1.38238 * 119.99882 * 269.72519 * 3 2 1 5 5 C 1.38232 * 120.00107 * 179.78611 * 4 3 2 6 6 C 1.38234 * 119.99711 * 0.44561 * 5 4 3 7 7 C 1.50705 * 120.00065 * 179.83300 * 6 5 4 8 8 H 1.08997 * 109.47371 * 199.97576 * 7 6 5 9 9 C 1.52994 * 109.47173 * 79.97485 * 7 6 5 10 10 N 1.46906 * 109.46946 * 319.97635 * 7 6 5 11 11 C 1.46905 * 110.99890 * 276.84969 * 10 7 6 12 12 H 1.09004 * 109.46944 * 36.41527 * 11 10 7 13 13 C 1.53004 * 109.46766 * 276.41929 * 11 10 7 14 14 C 1.50693 * 109.46743 * 156.41967 * 11 10 7 15 15 H 1.07998 * 120.00546 * 5.56090 * 14 11 10 16 16 C 1.37885 * 119.99371 * 185.56276 * 14 11 10 17 17 N 1.31509 * 120.00289 * 9.37464 * 16 14 11 18 18 Si 1.86801 * 119.99531 * 189.36873 * 16 14 11 19 19 H 1.48494 * 109.47133 * 94.99812 * 18 16 14 20 20 H 1.48506 * 109.47243 * 214.99277 * 18 16 14 21 21 H 1.48500 * 109.47654 * 334.99218 * 18 16 14 22 22 C 1.38237 * 120.00400 * 359.80995 * 6 5 4 23 23 C 1.38231 * 120.00165 * 89.99996 * 3 2 1 24 24 H 1.09000 * 109.47147 * 60.00488 * 1 2 3 25 25 H 1.08998 * 109.47494 * 300.00064 * 1 2 3 26 26 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47147 * 119.99512 * 2 1 3 28 28 H 1.08998 * 109.47494 * 239.99936 * 2 1 3 29 29 H 1.07998 * 120.00079 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.00491 * 180.27268 * 5 4 3 31 31 H 1.09002 * 109.47193 * 175.02652 * 9 7 6 32 32 H 1.08999 * 109.47289 * 295.03038 * 9 7 6 33 33 H 1.08997 * 109.47346 * 55.02494 * 9 7 6 34 34 H 1.00899 * 110.99825 * 152.89445 * 10 7 6 35 35 H 1.08999 * 109.46945 * 303.78846 * 13 11 10 36 36 H 1.08993 * 109.47243 * 63.78690 * 13 11 10 37 37 H 1.08998 * 109.46659 * 183.78959 * 13 11 10 38 38 H 0.97000 * 120.00202 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.00308 * 180.02562 * 22 6 5 40 40 H 1.08005 * 120.00053 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1972 5 6 2.7246 3.3754 -1.1973 6 6 2.9541 4.0273 -0.0001 7 6 3.4553 5.4486 -0.0001 8 1 3.9070 5.6746 0.9658 9 6 2.2855 6.4020 -0.2517 10 7 4.4586 5.6139 -1.0605 11 6 5.7830 5.1694 -0.6061 12 1 5.6717 4.3004 0.0425 13 6 6.4625 6.3003 0.1686 14 6 6.6258 4.8009 -1.7997 15 1 6.2522 4.9725 -2.7983 16 6 7.8742 4.2447 -1.6167 17 7 8.2556 3.8655 -0.4166 18 14 9.0234 4.0296 -3.0736 19 1 9.9434 5.1925 -3.1542 20 1 9.8138 2.7843 -2.9010 21 1 8.2269 3.9410 -4.3237 22 6 2.7234 3.3759 1.1971 23 6 2.2627 2.0725 1.1971 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0919 1.5601 -2.1325 30 1 2.9046 3.8845 -2.1326 31 1 2.6310 7.4321 -0.1642 32 1 1.8899 6.2353 -1.2536 33 1 1.5021 6.2178 0.4834 34 1 4.4890 6.5693 -1.3836 35 1 6.5130 7.1907 -0.4580 36 1 5.8877 6.5212 1.0680 37 1 7.4708 5.9948 0.4477 38 1 9.1340 3.4745 -0.2878 39 1 2.9023 3.8854 2.1324 40 1 2.0823 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038012752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:49 Heat of formation + Delta-G solvation = -11.836508 kcal Electronic energy + Delta-G solvation = -18005.068776 eV Core-core repulsion = 15396.990070 eV Total energy + Delta-G solvation = -2608.078706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49370 -38.13256 -35.56904 -34.21584 -32.37715 -31.68031 -29.54691 -28.46323 -27.16519 -25.08690 -23.49873 -22.76343 -22.12854 -20.85945 -18.35509 -17.08985 -16.88729 -16.55364 -16.01376 -15.58847 -15.28650 -14.77930 -14.45286 -14.33943 -14.18457 -14.00763 -13.77471 -13.36049 -13.27065 -13.06482 -12.81390 -12.77771 -12.35629 -12.34151 -12.23596 -12.16753 -11.93292 -11.67499 -11.56617 -11.44358 -11.03052 -10.44737 -9.66675 -9.25721 -8.96812 -8.10412 -6.16902 0.57529 0.66861 1.41487 1.42330 1.53284 2.44616 2.97428 3.19953 3.61770 3.92286 4.04058 4.11679 4.26043 4.36039 4.42171 4.48473 4.58279 4.68127 4.73596 4.80192 4.81515 4.82846 4.93434 4.99573 5.06679 5.12093 5.15417 5.29021 5.29498 5.33412 5.43490 5.45910 5.64163 5.69140 5.75861 5.83435 5.95469 6.25945 6.29468 6.70332 6.90707 6.99052 7.51183 8.98013 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.006383 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.182010 B = 4385.387648 C = 5151.156018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.096 4.096 4 C -0.136 4.136 5 C -0.094 4.094 6 C -0.082 4.082 7 C 0.118 3.882 8 H 0.029 0.971 9 C -0.134 4.134 10 N -0.676 5.676 11 C 0.221 3.779 12 H 0.000 1.000 13 C -0.151 4.151 14 C -0.509 4.509 15 H 0.055 0.945 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.269 1.269 22 C -0.133 4.133 23 C -0.129 4.129 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.335 0.665 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.040 0.960 38 H 0.259 0.741 39 H 0.122 0.878 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -2.388 2.058 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.154 4.154 5 C -0.112 4.112 6 C -0.083 4.083 7 C 0.008 3.992 8 H 0.047 0.953 9 C -0.192 4.192 10 N -0.307 5.307 11 C 0.113 3.887 12 H 0.018 0.982 13 C -0.210 4.210 14 C -0.548 4.548 15 H 0.073 0.927 16 C -0.188 4.188 17 N -0.565 5.565 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.193 1.193 22 C -0.151 4.151 23 C -0.147 4.147 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.140 0.860 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.662 -3.058 1.835 15.089 hybrid contribution 1.476 0.630 0.094 1.608 sum -13.185 -2.428 1.929 13.545 Atomic orbital electron populations 1.21699 0.93625 1.02404 1.01928 1.20557 0.97012 0.91167 1.03163 1.20136 0.99402 0.97281 0.92801 1.21237 1.00908 0.94864 0.98347 1.21020 0.97146 0.94879 0.98203 1.20009 0.98391 0.96452 0.93455 1.20414 0.93114 0.92231 0.93462 0.95255 1.21831 0.96723 0.97968 1.02645 1.60657 1.06721 1.27029 1.36253 1.18859 0.84730 0.91828 0.93331 0.98203 1.22207 1.01298 0.99305 0.98229 1.21401 1.00262 1.39755 0.93350 0.92710 1.25695 0.99805 0.95180 0.98164 1.70099 1.20429 1.42655 1.23339 0.85600 0.78945 0.77341 0.80079 1.20048 1.21367 1.19335 1.21186 1.00685 0.95753 0.97483 1.21142 1.00732 0.94505 0.98313 0.93002 0.92696 0.90887 0.90487 0.90930 0.85369 0.86568 0.91490 0.91815 0.91194 0.84721 0.93891 0.95422 0.94056 0.93207 0.85995 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.08 -1.80 6.07 29.85 0.18 -1.62 16 3 C -0.10 -2.82 5.13 -19.86 -0.10 -2.92 16 4 C -0.14 -4.42 9.70 22.27 0.22 -4.20 16 5 C -0.09 -3.49 9.32 22.27 0.21 -3.28 16 6 C -0.08 -3.04 4.50 -19.86 -0.09 -3.13 16 7 C 0.12 4.24 2.65 44.17 0.12 4.36 16 8 H 0.03 1.12 6.91 -2.39 -0.02 1.11 16 9 C -0.13 -3.67 9.17 71.98 0.66 -3.01 16 10 N -0.68 -28.29 5.27 -477.14 -2.52 -30.81 16 11 C 0.22 11.33 2.26 44.17 0.10 11.43 16 12 H 0.00 0.00 7.52 -2.38 -0.02 -0.02 16 13 C -0.15 -7.21 9.03 71.98 0.65 -6.56 16 14 C -0.51 -28.65 8.76 25.60 0.22 -28.43 16 15 H 0.05 3.09 7.83 -2.91 -0.02 3.06 16 16 C 0.01 0.55 5.17 84.66 0.44 0.98 16 17 N -0.92 -55.25 12.16 21.45 0.26 -54.99 16 18 Si 0.95 44.85 29.55 68.60 2.03 46.88 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C -0.13 -4.47 9.67 22.27 0.22 -4.26 16 23 C -0.13 -3.88 9.70 22.27 0.22 -3.66 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 28 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 29 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.12 4.49 7.72 -2.91 -0.02 4.47 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.33 12.87 8.11 -89.69 -0.73 12.14 16 35 H 0.04 1.88 8.07 -2.39 -0.02 1.87 16 36 H 0.03 1.17 7.36 -2.39 -0.02 1.15 16 37 H 0.04 2.20 6.83 -2.39 -0.02 2.18 16 38 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.12 3.74 8.04 -2.91 -0.02 3.71 16 40 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -63.33 327.17 3.78 -59.54 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.26 Total: 25.47 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 3.75 Total: -46.09 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.25 Total: -85.80 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.33 3.78 -59.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038012752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.707 kcal (2) G-P(sol) polarization free energy of solvation -63.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds