Wall clock time and date at job start Mon Mar 30 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46911 * 2 1 4 4 H 1.08998 * 109.47482 * 54.12320 * 3 2 1 5 5 C 1.50707 * 109.46729 * 174.12105 * 3 2 1 6 6 H 1.07998 * 119.99912 * 94.98878 * 5 3 2 7 7 C 1.37878 * 119.99736 * 274.98521 * 5 3 2 8 8 N 1.31507 * 120.00041 * 5.12976 * 7 5 3 9 9 Si 1.86803 * 119.99850 * 185.13323 * 7 5 3 10 10 H 1.48497 * 109.47085 * 269.99671 * 9 7 5 11 11 H 1.48505 * 109.46934 * 29.99949 * 9 7 5 12 12 H 1.48496 * 109.47044 * 149.99527 * 9 7 5 13 13 N 1.46500 * 109.47187 * 294.11716 * 3 2 1 14 14 C 1.46499 * 120.00075 * 304.77001 * 13 3 2 15 15 C 1.52998 * 109.47015 * 90.00019 * 14 13 3 16 16 C 1.39670 * 119.99763 * 124.77013 * 13 3 2 17 17 C 1.38938 * 120.07916 * 5.98332 * 16 13 3 18 18 C 1.38077 * 119.92859 * 179.97438 * 17 16 13 19 19 C 1.38311 * 120.07402 * 359.97438 * 18 17 16 20 20 C 1.38258 * 120.15206 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.96628 * 180.02562 * 20 19 18 22 22 C 1.38131 * 120.07442 * 359.75078 * 20 19 18 23 23 H 1.09000 * 109.47085 * 59.99832 * 1 2 3 24 24 H 1.08995 * 109.47518 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47287 * 300.00258 * 1 2 3 26 26 H 1.09000 * 109.46838 * 240.00031 * 2 1 3 27 27 H 1.08992 * 109.46796 * 120.00175 * 2 1 3 28 28 H 0.97001 * 120.00525 * 355.00723 * 8 7 5 29 29 H 1.09001 * 109.46729 * 210.00131 * 14 13 3 30 30 H 1.08996 * 109.47069 * 329.99535 * 14 13 3 31 31 H 1.09005 * 109.47067 * 179.97438 * 15 14 13 32 32 H 1.08999 * 109.47153 * 300.00104 * 15 14 13 33 33 H 1.08998 * 109.46893 * 60.00051 * 15 14 13 34 34 H 1.07998 * 120.03365 * 359.97438 * 17 16 13 35 35 H 1.08003 * 119.96236 * 180.02562 * 18 17 16 36 36 H 1.08001 * 119.92270 * 180.02562 * 19 18 17 37 37 H 1.08994 * 109.47045 * 90.00013 * 21 20 19 38 38 H 1.08994 * 109.47126 * 210.00229 * 21 20 19 39 39 H 1.09000 * 109.46768 * 330.00231 * 21 20 19 40 40 H 1.07998 * 120.04115 * 180.27341 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5933 1.9858 0.8327 5 6 3.5400 1.4449 0.1455 6 1 4.1676 1.4953 -0.7319 7 6 4.1110 1.3830 1.3990 8 7 3.3516 1.2202 2.4602 9 14 5.9635 1.5303 1.5897 10 1 6.5777 0.1804 1.5154 11 1 6.5069 2.3821 0.5013 12 1 6.2783 2.1458 2.9039 13 7 1.6706 2.0910 -1.2606 14 6 2.0625 1.4880 -2.5370 15 6 0.9665 0.5288 -3.0056 16 6 0.9449 3.2843 -1.2457 17 6 0.6795 3.9228 -0.0406 18 6 -0.0377 5.1026 -0.0294 19 6 -0.4915 5.6491 -1.2162 20 6 -0.2293 5.0164 -2.4172 21 6 -0.7252 5.6159 -3.7079 22 6 0.4917 3.8383 -2.4360 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.3859 1.2163 2.3696 29 1 2.2022 2.2718 -3.2814 30 1 2.9952 0.9389 -2.4082 31 1 1.2579 0.0804 -3.9555 32 1 0.8268 -0.2550 -2.2611 33 1 0.0338 1.0780 -3.1344 34 1 1.0339 3.4968 0.8864 35 1 -0.2440 5.5997 0.9070 36 1 -1.0520 6.5722 -1.2047 37 1 0.0300 6.2921 -4.1082 38 1 -0.9185 4.8203 -4.4273 39 1 -1.6459 6.1688 -3.5215 40 1 0.7000 3.3468 -3.3748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040234944.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:03 Heat of formation + Delta-G solvation = 1.538245 kcal Electronic energy + Delta-G solvation = -18737.326747 eV Core-core repulsion = 16129.828014 eV Total energy + Delta-G solvation = -2607.498733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71296 -38.42928 -35.32832 -33.68768 -33.32732 -31.77887 -30.22315 -27.62895 -27.51153 -25.09814 -24.26425 -22.50778 -22.20948 -20.72294 -18.75806 -18.38258 -16.71734 -16.54659 -15.72900 -15.58192 -15.44896 -14.77484 -14.66520 -14.61195 -14.44536 -13.87492 -13.74516 -13.73329 -13.16207 -12.95999 -12.79688 -12.72909 -12.58036 -12.46702 -12.13437 -12.00304 -11.95312 -11.86767 -11.71894 -11.24576 -10.95962 -10.54911 -10.20656 -9.51149 -8.66252 -7.87323 -6.34754 0.61991 0.87651 1.49213 1.57606 1.74434 2.46352 2.58794 3.07452 3.19718 3.99266 4.07476 4.16068 4.26465 4.34776 4.40610 4.44972 4.53933 4.57317 4.61240 4.67545 4.76280 4.82846 4.87240 4.92037 5.00309 5.04546 5.08986 5.16101 5.21373 5.29723 5.30705 5.39689 5.55105 5.62669 5.76241 5.87928 5.97634 6.07808 6.24863 6.55897 6.76615 6.98283 7.44094 8.74975 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.007668 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.441144 B = 3650.662480 C = 4073.808126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C 0.262 3.738 4 H 0.025 0.975 5 C -0.608 4.608 6 H 0.043 0.957 7 C -0.024 4.024 8 N -0.933 5.933 9 Si 1.111 2.889 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.607 5.607 14 C 0.121 3.879 15 C -0.168 4.168 16 C 0.220 3.780 17 C -0.236 4.236 18 C -0.075 4.075 19 C -0.201 4.201 20 C -0.044 4.044 21 C -0.106 4.106 22 C -0.220 4.220 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.258 0.742 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 4.298 -11.429 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.159 3.841 4 H 0.043 0.957 5 C -0.647 4.647 6 H 0.062 0.938 7 C -0.223 4.223 8 N -0.570 5.570 9 Si 0.934 3.066 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.313 5.313 14 C -0.002 4.002 15 C -0.226 4.226 16 C 0.114 3.886 17 C -0.259 4.259 18 C -0.093 4.093 19 C -0.221 4.221 20 C -0.045 4.045 21 C -0.163 4.163 22 C -0.243 4.243 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.917 4.027 -10.331 12.568 hybrid contribution -0.941 -0.205 -0.385 1.037 sum -6.858 3.822 -10.716 13.285 Atomic orbital electron populations 1.21777 0.95924 1.01016 1.00905 1.21889 0.94937 0.98707 1.00067 1.18723 0.93396 0.89495 0.82487 0.95678 1.22546 0.92949 1.54534 0.94657 0.93845 1.27016 1.10397 0.92813 0.92064 1.70889 1.06305 1.47499 1.32330 0.82985 0.70198 0.77553 0.75824 1.19770 1.20423 1.21082 1.47030 1.56167 1.21888 1.06208 1.21271 0.97611 0.96429 0.84885 1.22413 0.98823 0.99665 1.01725 1.18205 0.89885 0.86267 0.94218 1.20766 1.08689 0.99986 0.96478 1.21023 0.95335 0.93845 0.99124 1.20917 1.07093 1.02538 0.91540 1.20014 0.94716 0.93241 0.96503 1.20796 1.01624 1.01013 0.92820 1.20656 1.07576 1.00139 0.95967 0.92265 0.92127 0.94952 0.92205 0.94788 0.93107 0.90986 0.92418 0.90198 0.92307 0.92680 0.89365 0.85540 0.84408 0.90367 0.90985 0.90160 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 8.97 71.98 0.65 -4.61 16 2 C -0.12 -5.21 4.74 30.59 0.14 -5.07 16 3 C 0.26 12.87 1.56 44.25 0.07 12.94 16 4 H 0.03 1.40 4.17 -2.39 -0.01 1.39 16 5 C -0.61 -33.44 8.16 25.60 0.21 -33.23 16 6 H 0.04 2.41 6.99 -2.91 -0.02 2.39 16 7 C -0.02 -1.33 5.45 84.66 0.46 -0.87 16 8 N -0.93 -55.90 13.63 21.45 0.29 -55.60 16 9 Si 1.11 50.60 29.91 68.60 2.05 52.65 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 N -0.61 -25.75 2.02 -677.52 -1.37 -27.12 16 14 C 0.12 4.31 4.98 86.38 0.43 4.74 16 15 C -0.17 -4.89 8.76 71.98 0.63 -4.26 16 16 C 0.22 9.00 6.54 38.22 0.25 9.25 16 17 C -0.24 -10.09 9.27 22.40 0.21 -9.89 16 18 C -0.07 -2.62 10.04 22.25 0.22 -2.40 16 19 C -0.20 -6.00 9.70 22.29 0.22 -5.79 16 20 C -0.04 -1.28 5.88 -19.88 -0.12 -1.40 16 21 C -0.11 -2.11 10.01 71.24 0.71 -1.40 16 22 C -0.22 -7.46 8.74 22.40 0.20 -7.26 16 23 H 0.06 2.15 6.04 -2.39 -0.01 2.14 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 2.53 5.83 -2.39 -0.01 2.51 16 27 H 0.03 1.68 7.91 -2.39 -0.02 1.66 16 28 H 0.26 15.64 6.45 -92.71 -0.60 15.04 16 29 H 0.07 2.31 6.45 -2.39 -0.02 2.30 16 30 H 0.06 2.24 6.97 -2.39 -0.02 2.22 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.06 1.85 4.28 -2.39 -0.01 1.84 16 33 H 0.05 1.56 7.98 -2.39 -0.02 1.54 16 34 H 0.09 4.33 5.83 -2.91 -0.02 4.32 16 35 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 39 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 40 H 0.13 3.86 6.18 -2.91 -0.02 3.84 16 Total: -1.00 -63.08 309.60 6.44 -56.64 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 1.19 Total: 22.68 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 4.28 Total: -49.24 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.07 Total: -82.73 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.05 Total: 52.65 kcal Total: -63.08 6.44 -56.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040234944.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.174 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds