Wall clock time and date at job start Mon Mar 30 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46944 * 2 1 4 4 H 1.08995 * 109.47267 * 303.38137 * 3 2 1 5 5 C 1.50699 * 109.47074 * 183.37973 * 3 2 1 6 6 H 1.07994 * 120.00245 * 334.95860 * 5 3 2 7 7 C 1.37881 * 119.99844 * 154.96319 * 5 3 2 8 8 N 1.31516 * 120.00026 * 355.04499 * 7 5 3 9 9 Si 1.86799 * 119.99906 * 175.04636 * 7 5 3 10 10 H 1.48491 * 109.47303 * 59.99805 * 9 7 5 11 11 H 1.48494 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46976 * 299.99352 * 9 7 5 13 13 N 1.46500 * 109.47119 * 63.38118 * 3 2 1 14 14 C 1.46502 * 120.00108 * 65.77614 * 13 3 2 15 15 C 1.52994 * 109.46952 * 95.68362 * 14 13 3 16 16 C 1.39674 * 119.99891 * 245.78128 * 13 3 2 17 17 C 1.38927 * 120.07984 * 5.56110 * 16 13 3 18 18 C 1.38078 * 119.93009 * 179.97438 * 17 16 13 19 19 C 1.38308 * 120.07262 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.15291 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.96555 * 179.97438 * 20 19 18 22 22 C 1.38129 * 120.07294 * 359.74045 * 20 19 18 23 23 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46982 * 299.99192 * 1 2 3 25 25 H 1.09000 * 109.47480 * 59.99778 * 1 2 3 26 26 H 1.09006 * 109.46982 * 240.00808 * 2 1 3 27 27 H 1.09000 * 109.47480 * 120.00222 * 2 1 3 28 28 H 0.97004 * 119.99613 * 5.15044 * 8 7 5 29 29 H 1.09000 * 109.47176 * 215.68516 * 14 13 3 30 30 H 1.09001 * 109.46876 * 335.68161 * 14 13 3 31 31 H 1.08992 * 109.47438 * 304.87470 * 15 14 13 32 32 H 1.09005 * 109.47101 * 64.88100 * 15 14 13 33 33 H 1.09004 * 109.47336 * 184.87439 * 15 14 13 34 34 H 1.08002 * 120.03291 * 0.02562 * 17 16 13 35 35 H 1.08000 * 119.96303 * 179.97438 * 18 17 16 36 36 H 1.07999 * 119.92576 * 179.97438 * 19 18 17 37 37 H 1.09007 * 109.46549 * 89.99712 * 21 20 19 38 38 H 1.09001 * 109.47319 * 209.99451 * 21 20 19 39 39 H 1.08994 * 109.47011 * 330.00010 * 21 20 19 40 40 H 1.07989 * 120.04123 * 180.27652 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6280 1.9736 -0.8581 5 6 3.5446 1.4434 -0.0838 6 1 4.1053 0.5888 0.2647 7 6 4.2054 2.5354 -0.6053 8 7 3.5213 3.5344 -1.1188 9 14 6.0723 2.5959 -0.5825 10 1 6.6141 1.4474 -1.3522 11 1 6.5339 3.8658 -1.1984 12 1 6.5528 2.5224 0.8207 13 7 1.6192 2.1092 1.2348 14 6 2.1472 1.6610 2.5258 15 6 3.3460 2.5282 2.9153 16 6 0.7147 3.1721 1.1813 17 6 0.1245 3.5240 -0.0261 18 6 -0.7698 4.5750 -0.0754 19 6 -1.0786 5.2768 1.0757 20 6 -0.4931 4.9293 2.2791 21 6 -0.8321 5.6972 3.5306 22 6 0.3986 3.8759 2.3363 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.5528 3.5380 -1.0637 29 1 1.3716 1.7505 3.2864 30 1 2.4616 0.6202 2.4481 31 1 4.0851 2.5072 2.1145 32 1 3.0149 3.5540 3.0775 33 1 3.7919 2.1412 3.8316 34 1 0.3642 2.9756 -0.9251 35 1 -1.2286 4.8493 -1.0138 36 1 -1.7780 6.0986 1.0344 37 1 -1.6877 5.2328 4.0212 38 1 0.0234 5.6874 4.2060 39 1 -1.0775 6.7267 3.2699 40 1 0.8522 3.6022 3.2773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040234946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:06 Heat of formation + Delta-G solvation = 11.355393 kcal Electronic energy + Delta-G solvation = -18999.287117 eV Core-core repulsion = 16392.214088 eV Total energy + Delta-G solvation = -2607.073029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.08485 -36.62879 -33.20027 -32.16563 -32.04568 -30.07967 -28.22705 -26.27654 -25.99013 -23.08021 -22.71696 -20.94847 -20.68596 -18.83789 -16.85160 -16.63965 -14.96873 -14.84958 -14.11094 -13.83323 -13.76713 -13.38569 -13.23935 -13.14537 -12.69319 -12.43693 -12.21109 -12.02675 -11.74962 -11.35026 -11.29455 -11.14698 -10.92761 -10.79263 -10.63253 -10.32142 -10.24888 -10.10145 -10.00866 -9.56339 -9.11039 -8.61259 -8.36521 -7.99168 -6.45445 -6.15645 -4.22057 2.17593 2.45694 3.35666 3.37407 3.56482 4.23450 4.43188 4.65480 5.37978 5.42562 5.48731 5.68728 5.77599 5.87670 5.88694 5.90773 5.92538 6.07575 6.09593 6.16102 6.17828 6.23321 6.32032 6.38091 6.55319 6.58581 6.61500 6.71364 6.80068 6.83592 6.98649 7.08575 7.21799 7.25421 7.32577 7.39772 7.71570 7.97840 8.28141 8.56262 8.68157 8.82864 9.53097 10.93075 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.008748 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.452210 B = 3200.045598 C = 3490.244086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.242 3.758 4 H 0.057 0.943 5 C -0.600 4.600 6 H 0.050 0.950 7 C 0.035 3.965 8 N -0.893 5.893 9 Si 1.059 2.941 10 H -0.287 1.287 11 H -0.282 1.282 12 H -0.286 1.286 13 N -0.596 5.596 14 C 0.137 3.863 15 C -0.170 4.170 16 C 0.246 3.754 17 C -0.202 4.202 18 C -0.070 4.070 19 C -0.209 4.209 20 C -0.047 4.047 21 C -0.108 4.108 22 C -0.220 4.220 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.279 0.721 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 -0.682 5.934 8.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.143 3.857 4 H 0.075 0.925 5 C -0.639 4.639 6 H 0.069 0.931 7 C -0.174 4.174 8 N -0.527 5.527 9 Si 0.887 3.113 10 H -0.214 1.214 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.301 5.301 14 C 0.013 3.987 15 C -0.228 4.228 16 C 0.138 3.862 17 C -0.225 4.225 18 C -0.089 4.089 19 C -0.230 4.230 20 C -0.047 4.047 21 C -0.165 4.165 22 C -0.243 4.243 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.585 0.010 5.427 7.105 hybrid contribution -1.154 -0.847 0.549 1.533 sum -5.740 -0.838 5.976 8.328 Atomic orbital electron populations 1.21772 0.97627 0.99567 1.01357 1.21836 0.93743 0.99691 1.00712 1.19061 0.94867 0.88169 0.83565 0.92484 1.22087 0.90929 1.04495 1.46414 0.93138 1.25771 1.06654 0.92592 0.92375 1.70749 1.10396 1.32646 1.38899 0.83696 0.74725 0.76293 0.76549 1.21361 1.20728 1.21270 1.48334 1.42579 1.32015 1.07151 1.20917 0.94468 0.98060 0.85260 1.22285 1.00141 0.99396 1.01009 1.18022 0.87479 0.87641 0.93093 1.20662 1.02700 1.02160 0.96972 1.20717 0.96404 0.94562 0.97229 1.20441 1.05964 1.03757 0.92812 1.19473 0.95618 0.95048 0.94590 1.20719 1.01166 0.99115 0.95486 1.20446 1.05812 1.00674 0.97404 0.94461 0.93115 0.93584 0.92300 0.93361 0.90820 0.93680 0.91619 0.89942 0.93691 0.94163 0.86521 0.87412 0.87874 0.91967 0.92223 0.92197 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.79 37.16 0.36 -2.23 16 2 C -0.12 -2.44 5.39 -26.73 -0.14 -2.58 16 3 C 0.24 5.60 1.66 -69.08 -0.11 5.48 16 4 H 0.06 1.44 4.03 -51.93 -0.21 1.23 16 5 C -0.60 -15.38 6.51 -34.44 -0.22 -15.61 16 6 H 0.05 1.30 7.81 -52.49 -0.41 0.89 16 7 C 0.03 0.94 5.06 -17.82 -0.09 0.85 16 8 N -0.89 -25.72 13.63 55.43 0.76 -24.96 16 9 Si 1.06 24.23 29.91 -169.99 -5.08 19.15 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.60 -12.81 1.89 -165.50 -0.31 -13.12 16 14 C 0.14 2.66 5.12 -4.04 -0.02 2.64 16 15 C -0.17 -3.34 9.94 37.15 0.37 -2.97 16 16 C 0.25 5.25 6.45 -83.78 -0.54 4.71 16 17 C -0.20 -4.27 8.34 -39.39 -0.33 -4.60 16 18 C -0.07 -1.32 10.04 -39.61 -0.40 -1.72 16 19 C -0.21 -3.71 9.70 -39.55 -0.38 -4.09 16 20 C -0.05 -0.83 5.88 -104.65 -0.62 -1.44 16 21 C -0.11 -1.49 10.01 36.01 0.36 -1.13 16 22 C -0.22 -4.31 8.37 -39.38 -0.33 -4.64 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.93 7.64 -51.93 -0.40 0.54 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.95 6.85 -51.93 -0.36 0.59 16 28 H 0.28 7.96 5.51 -40.82 -0.22 7.73 16 29 H 0.04 0.79 6.77 -51.93 -0.35 0.44 16 30 H 0.07 1.26 6.73 -51.93 -0.35 0.91 16 31 H 0.08 1.89 6.24 -51.93 -0.32 1.57 16 32 H 0.04 0.89 7.12 -51.93 -0.37 0.52 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.12 2.58 5.68 -52.49 -0.30 2.28 16 35 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.11 2.06 5.77 -52.49 -0.30 1.75 16 LS Contribution 312.12 15.07 4.70 4.70 Total: -1.00 -27.78 312.12 -8.22 -36.00 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.19 Total: 5.57 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -2.10 Total: -27.33 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.44 Total: -38.09 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.08 Total: 19.15 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.78 -8.22 -36.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040234946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.354 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds