Wall clock time and date at job start Mon Mar 30 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38287 * 119.92498 * 59.72499 * 4 2 1 6 6 C 1.38103 * 120.07544 * 179.72708 * 5 4 2 7 7 C 1.38910 * 119.92428 * 0.54143 * 6 5 4 8 8 N 1.39676 * 120.07857 * 179.70545 * 7 6 5 9 9 C 1.46507 * 119.99552 * 0.02698 * 8 7 6 10 10 C 1.52994 * 109.47078 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47523 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47424 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00139 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00094 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00047 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00197 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47139 * 59.99705 * 16 14 12 18 18 H 1.48496 * 109.47204 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46637 * 299.99959 * 16 14 12 20 20 C 1.38909 * 119.84779 * 359.73239 * 7 6 5 21 21 C 1.38099 * 119.93044 * 359.97438 * 20 7 6 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08004 * 119.96348 * 359.97438 * 5 4 2 30 30 H 1.08005 * 120.03631 * 180.27369 * 6 5 4 31 31 H 0.96997 * 120.00339 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.46992 * 299.99873 * 9 8 7 33 33 H 1.08993 * 109.47129 * 59.99837 * 9 8 7 34 34 H 1.09005 * 109.46904 * 300.00259 * 10 9 8 35 35 H 1.09001 * 109.47611 * 59.99345 * 10 9 8 36 36 H 1.08997 * 109.47517 * 300.00411 * 11 10 9 37 37 H 1.09005 * 109.47107 * 59.99928 * 11 10 9 38 38 H 0.96993 * 119.99985 * 180.02562 * 15 14 12 39 39 H 1.08006 * 120.03388 * 179.97438 * 20 7 6 40 40 H 1.07999 * 119.97120 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2399 -2.4857 6 6 2.1558 -0.8852 -3.6154 7 6 2.9546 -2.0146 -3.4898 8 7 3.4199 -2.6734 -4.6302 9 6 3.0659 -2.1728 -5.9609 10 6 3.6980 -3.0689 -7.0277 11 6 3.3279 -2.5466 -8.4172 12 6 3.9511 -3.4289 -9.4680 13 1 4.5508 -4.2776 -9.1742 14 6 3.7556 -3.1527 -10.8046 15 7 3.0248 -2.1194 -11.1626 16 14 4.5275 -4.2468 -12.1072 17 1 4.0232 -5.6346 -11.9502 18 1 4.1693 -3.7390 -13.4559 19 1 6.0042 -4.2360 -11.9508 20 6 3.2893 -2.4879 -2.2274 21 6 2.8277 -1.8343 -1.1019 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.0676 0.6356 -2.5827 30 1 1.8937 -0.5146 -4.5954 31 1 3.9773 -3.4622 -4.5413 32 1 1.9819 -2.1811 -6.0756 33 1 3.4356 -1.1540 -6.0760 34 1 4.7820 -3.0610 -6.9130 35 1 3.3280 -4.0877 -6.9124 36 1 2.2440 -2.5547 -8.5317 37 1 3.6977 -1.5278 -8.5328 38 1 2.8870 -1.9253 -12.1028 39 1 3.9099 -3.3660 -2.1263 40 1 3.0871 -2.2019 -0.1200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042221173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:01 Heat of formation + Delta-G solvation = -25.306023 kcal Electronic energy + Delta-G solvation = -16866.812594 eV Core-core repulsion = 14258.149806 eV Total energy + Delta-G solvation = -2608.662788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55807 -37.94642 -36.12760 -34.87213 -32.98607 -31.74542 -29.67695 -27.89189 -27.66412 -25.05202 -24.08548 -22.69576 -21.87379 -20.78303 -18.53397 -18.20427 -16.75766 -16.49237 -16.39411 -16.32631 -15.33886 -15.00369 -14.55125 -14.52674 -14.19054 -14.08243 -14.00962 -13.73175 -13.41874 -13.22856 -12.92439 -12.69915 -12.57947 -12.38290 -12.02623 -12.00969 -11.69281 -11.58361 -11.45079 -11.36690 -11.21330 -10.69837 -10.56958 -9.76456 -8.22109 -8.19210 -6.33551 0.60069 0.76189 1.39567 1.42446 1.50447 2.38555 2.58039 3.01934 3.11364 3.91807 3.98896 4.13627 4.19757 4.20904 4.28184 4.44267 4.53698 4.59844 4.66882 4.71927 4.86604 4.87930 4.94083 5.06035 5.07422 5.08127 5.12948 5.20421 5.23968 5.40685 5.47274 5.47304 5.52916 5.64214 5.68567 5.81312 5.91982 6.04963 6.20754 6.46992 6.82663 6.91715 7.35916 8.89710 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.055197 B = 0.003101 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.152855 B = 9027.123704 C = 9332.614504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C -0.143 4.143 4 C -0.146 4.146 5 C -0.071 4.071 6 C -0.218 4.218 7 C 0.198 3.802 8 N -0.745 5.745 9 C 0.138 3.862 10 C -0.103 4.103 11 C 0.027 3.973 12 C -0.546 4.546 13 H 0.062 0.938 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.204 4.204 21 C -0.074 4.074 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.404 0.596 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.059 0.941 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.264 0.736 39 H 0.131 0.869 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 2.944 23.187 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.148 4.148 5 C -0.090 4.090 6 C -0.240 4.240 7 C 0.094 3.906 8 N -0.374 5.374 9 C 0.014 3.986 10 C -0.141 4.141 11 C -0.011 4.011 12 C -0.584 4.584 13 H 0.080 0.920 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.227 4.227 21 C -0.092 4.092 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.128 0.872 31 H 0.239 0.761 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.211 3.124 22.846 23.164 hybrid contribution 0.429 -0.607 -1.315 1.511 sum -1.782 2.518 21.531 21.751 Atomic orbital electron populations 1.21853 0.94377 1.01672 1.02088 1.20014 0.95867 0.95876 0.94683 1.21851 1.00834 0.95214 1.02082 1.19841 1.02065 0.98099 0.94791 1.20850 0.97865 0.98753 0.91515 1.20802 1.05070 0.98749 0.99426 1.18126 0.93094 0.91996 0.87344 1.44766 1.57369 1.32666 1.02639 1.21185 0.98644 0.97304 0.81489 1.21560 0.99974 0.98617 0.93952 1.18912 0.95205 0.95282 0.91669 1.21654 1.31843 1.12806 0.92079 0.92025 1.25995 0.95725 0.96793 1.01360 1.70088 1.40400 1.29365 1.17465 0.85489 0.79085 0.78965 0.77452 1.19132 1.20845 1.19142 1.20780 1.07387 1.03910 0.90623 1.21044 0.95628 0.94237 0.98319 0.93165 0.91294 0.93056 0.89860 0.93167 0.93074 0.91288 0.85505 0.87189 0.76086 0.93365 0.93359 0.92253 0.92256 0.98739 0.98747 0.92699 0.85084 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.00 71.98 0.65 -1.46 16 2 C -0.05 -0.74 3.09 -11.54 -0.04 -0.77 16 3 C -0.14 -2.11 9.01 71.98 0.65 -1.46 16 4 C -0.15 -3.12 4.79 -19.84 -0.09 -3.22 16 5 C -0.07 -1.74 8.70 22.25 0.19 -1.55 16 6 C -0.22 -6.29 9.31 22.40 0.21 -6.08 16 7 C 0.20 5.69 6.65 38.21 0.25 5.94 16 8 N -0.74 -22.11 5.73 -339.42 -1.95 -24.06 16 9 C 0.14 4.82 4.91 86.38 0.42 5.24 16 10 C -0.10 -4.13 5.27 30.59 0.16 -3.97 16 11 C 0.03 1.41 4.97 29.85 0.15 1.56 16 12 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 15 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 16 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.20 -4.95 9.90 22.40 0.22 -4.73 16 21 C -0.07 -1.57 9.66 22.25 0.21 -1.35 16 22 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.80 7.37 -2.39 -0.02 0.79 16 25 H 0.08 1.14 7.87 -2.39 -0.02 1.12 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.80 7.40 -2.39 -0.02 0.79 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.13 2.69 7.09 -2.91 -0.02 2.67 16 30 H 0.11 3.33 6.74 -2.91 -0.02 3.31 16 31 H 0.40 10.61 8.49 -92.71 -0.79 9.82 16 32 H 0.05 1.73 7.95 -2.39 -0.02 1.72 16 33 H 0.05 1.74 7.95 -2.39 -0.02 1.72 16 34 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.14 2.21 7.94 -2.91 -0.02 2.19 16 Total: -1.00 -63.43 327.74 4.26 -59.17 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.21 Total: 17.55 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 3.69 Total: -42.18 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.66 Total: -80.68 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -63.43 4.26 -59.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.863 kcal (2) G-P(sol) polarization free energy of solvation -63.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds