Wall clock time and date at job start Mon Mar 30 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 13 13 C 1.46903 * 110.99880 * 85.00797 * 12 2 1 14 14 H 1.09008 * 109.46643 * 324.99496 * 13 12 2 15 15 C 1.52991 * 109.47675 * 84.99764 * 13 12 2 16 16 C 1.53007 * 109.46857 * 205.00062 * 13 12 2 17 17 C 1.52996 * 109.47111 * 64.99607 * 16 13 12 18 18 C 1.50710 * 109.46967 * 180.02562 * 17 16 13 19 19 C 1.38230 * 119.99460 * 269.72595 * 18 17 16 20 20 C 1.38243 * 119.99425 * 179.76492 * 19 18 17 21 21 C 1.38236 * 120.00152 * 0.50429 * 20 19 18 22 22 C 1.38240 * 119.99598 * 359.74745 * 21 20 19 23 23 C 1.38234 * 119.99733 * 89.99804 * 18 17 16 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99967 * 208.95457 * 12 2 1 29 29 H 1.09004 * 109.47193 * 180.02562 * 15 13 12 30 30 H 1.09002 * 109.47159 * 299.99608 * 15 13 12 31 31 H 1.09000 * 109.47151 * 59.99871 * 15 13 12 32 32 H 1.08996 * 109.46663 * 184.99410 * 16 13 12 33 33 H 1.08999 * 109.46708 * 304.99367 * 16 13 12 34 34 H 1.08996 * 109.47196 * 299.99476 * 17 16 13 35 35 H 1.08999 * 109.47531 * 60.00263 * 17 16 13 36 36 H 1.08002 * 120.00778 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.99793 * 180.22981 * 20 19 18 38 38 H 1.07991 * 120.00027 * 179.72413 * 21 20 19 39 39 H 1.08000 * 119.99394 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.00477 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 1 1.2576 0.9329 -2.2906 15 6 3.4111 0.9807 -2.3224 16 6 1.9769 -0.5798 -3.6454 17 6 0.5982 -1.2380 -3.7276 18 6 0.4945 -2.0288 -5.0063 19 6 0.0139 -1.4267 -6.1541 20 6 -0.0766 -2.1508 -7.3283 21 6 0.3036 -3.4796 -7.3520 22 6 0.7793 -4.0830 -6.2028 23 6 0.8747 -3.3576 -5.0299 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9040 -0.5274 4.4375 28 1 2.9173 -1.1206 -1.0287 29 1 3.4575 1.6600 -3.1736 30 1 3.4863 1.5524 -1.3974 31 1 4.2359 0.2703 -2.3786 32 1 2.1124 0.0873 -4.4967 33 1 2.7486 -1.3495 -3.6606 34 1 0.4628 -1.9051 -2.8764 35 1 -0.1734 -0.4683 -3.7124 36 1 -0.2876 -0.3899 -6.1345 37 1 -0.4486 -1.6794 -8.2260 38 1 0.2286 -4.0464 -8.2682 39 1 1.0759 -5.1213 -6.2213 40 1 1.2456 -3.8292 -4.1320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044482661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:36 Heat of formation + Delta-G solvation = 9.074911 kcal Electronic energy + Delta-G solvation = -17665.425308 eV Core-core repulsion = 15058.253390 eV Total energy + Delta-G solvation = -2607.171918 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.26682 -37.28293 -34.18645 -32.55836 -31.06058 -30.84885 -28.46068 -27.41021 -25.05803 -23.87743 -22.51929 -20.93020 -20.39509 -19.66230 -16.73272 -16.66307 -15.51559 -15.17505 -15.11443 -14.43786 -13.87728 -13.66934 -13.39496 -13.18624 -12.87593 -12.65981 -12.52666 -12.42581 -12.12237 -11.77776 -11.37471 -11.24958 -11.10246 -10.91898 -10.70200 -10.56062 -10.35608 -10.13740 -10.07810 -9.45845 -9.01494 -8.89570 -8.62933 -8.57860 -7.42165 -6.09368 -4.08727 1.41086 1.42816 3.27022 3.36279 3.38703 3.82810 4.38883 4.86574 4.90615 4.99876 5.03555 5.14748 5.24844 5.33159 5.49555 5.54390 5.60144 5.68771 5.78609 5.92424 6.00310 6.02774 6.15471 6.17597 6.28174 6.39063 6.45885 6.50054 6.50892 6.53443 6.59786 6.67691 6.76204 6.85665 6.88183 7.07019 7.41935 7.60155 7.98771 8.39360 8.64128 8.96094 9.53468 11.03748 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035389 B = 0.004480 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.009439 B = 6248.040955 C = 6368.316190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.182 3.818 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.078 0.922 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.299 1.299 11 H -0.269 1.269 12 N -0.671 5.671 13 C 0.078 3.922 14 H 0.069 0.931 15 C -0.179 4.179 16 C -0.094 4.094 17 C -0.077 4.077 18 C -0.069 4.069 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.116 4.116 24 H 0.035 0.965 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.264 0.736 28 H 0.339 0.661 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -0.658 -19.312 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.073 3.927 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.302 5.302 13 C -0.033 4.033 14 H 0.087 0.913 15 C -0.238 4.238 16 C -0.132 4.132 17 C -0.114 4.114 18 C -0.069 4.069 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.153 4.153 22 C -0.138 4.138 23 C -0.134 4.134 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.320 -0.912 -19.269 19.574 hybrid contribution 0.146 1.336 0.451 1.418 sum -3.174 0.424 -18.818 19.088 Atomic orbital electron populations 1.22077 0.98870 1.00915 0.97572 1.19508 0.91547 0.93058 0.88604 0.98193 1.21119 1.32160 1.13679 0.88658 0.90428 1.24934 0.95708 0.96675 0.95797 1.69893 1.45642 1.40311 0.97918 0.86807 0.80709 0.83643 0.76683 1.20547 1.22633 1.19433 1.60612 1.32862 1.31874 1.04865 1.21599 0.96053 0.93583 0.92019 0.91266 1.22490 0.98988 1.00786 1.01558 1.21503 0.96496 0.98834 0.96362 1.20596 0.97606 0.99070 0.94169 1.20186 0.96608 0.94300 0.95851 1.21090 1.00565 0.99812 0.92664 1.21102 1.00460 0.94624 0.97872 1.21071 1.00756 0.95265 0.98191 1.21152 0.99823 0.99757 0.93113 1.21174 0.99906 0.94084 0.98247 0.94668 0.95637 0.92413 0.92631 0.84265 0.93256 0.92418 0.92742 0.92822 0.92095 0.89000 0.91794 0.86366 0.86554 0.86620 0.86379 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.88 37.16 0.33 -2.69 16 2 C 0.18 4.22 2.00 -68.86 -0.14 4.08 16 3 H 0.00 0.01 6.17 -51.93 -0.32 -0.31 16 4 C -0.52 -14.32 9.17 -34.44 -0.32 -14.64 16 5 H 0.08 2.32 7.86 -52.49 -0.41 1.90 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 7 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 8 Si 0.89 22.09 24.37 -169.99 -4.14 17.95 16 9 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 10 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.67 -13.04 5.50 -100.95 -0.56 -13.60 16 13 C 0.08 1.26 2.40 -67.71 -0.16 1.10 16 14 H 0.07 1.16 7.11 -51.92 -0.37 0.79 16 15 C -0.18 -2.70 9.15 37.15 0.34 -2.36 16 16 C -0.09 -1.29 4.87 -26.73 -0.13 -1.42 16 17 C -0.08 -1.06 5.23 -27.88 -0.15 -1.20 16 18 C -0.07 -0.89 5.13 -104.62 -0.54 -1.43 16 19 C -0.12 -1.44 9.70 -39.58 -0.38 -1.83 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 24 H 0.03 0.81 3.27 -51.93 -0.17 0.64 16 25 H 0.02 0.49 7.43 -51.93 -0.39 0.10 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.34 6.72 7.96 -39.29 -0.31 6.41 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.97 7.43 -51.93 -0.39 0.58 16 31 H 0.05 0.79 8.13 -51.93 -0.42 0.36 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.43 7.69 -51.93 -0.40 1.03 16 35 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -29.39 318.48 -8.53 -37.91 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.58 Total: 5.06 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -2.82 Total: -25.51 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.22 Total: -40.21 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.39 -8.53 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044482661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.988 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds