Wall clock time and date at job start Mon Mar 30 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47316 * 2 1 4 4 C 1.53003 * 109.47395 * 240.00344 * 2 1 3 5 5 C 1.53004 * 109.47245 * 174.99935 * 4 2 1 6 6 C 1.50703 * 109.46894 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99688 * 269.72653 * 6 5 4 8 8 C 1.38238 * 119.99826 * 179.76838 * 7 6 5 9 9 C 1.38244 * 119.99907 * 0.50265 * 8 7 6 10 10 C 1.38238 * 119.99609 * 359.74897 * 9 8 7 11 11 C 1.38227 * 120.00145 * 359.97438 * 10 9 8 12 12 N 1.46898 * 109.47522 * 119.99994 * 2 1 3 13 13 C 1.46902 * 110.99802 * 263.64120 * 12 2 1 14 14 H 1.09002 * 109.47487 * 337.65191 * 13 12 2 15 15 C 1.53001 * 109.47066 * 97.65053 * 13 12 2 16 16 C 1.50700 * 109.47017 * 217.64986 * 13 12 2 17 17 H 1.08001 * 120.00220 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99958 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00068 * 179.97438 * 18 16 13 20 20 Si 1.86796 * 119.99908 * 359.97438 * 18 16 13 21 21 H 1.48499 * 109.47446 * 89.99771 * 20 18 16 22 22 H 1.48497 * 109.47332 * 210.00103 * 20 18 16 23 23 H 1.48504 * 109.47445 * 329.99960 * 20 18 16 24 24 H 1.09000 * 109.47324 * 66.07011 * 1 2 3 25 25 H 1.09005 * 109.46865 * 186.06416 * 1 2 3 26 26 H 1.08999 * 109.46949 * 306.05850 * 1 2 3 27 27 H 1.09003 * 109.46913 * 294.99650 * 4 2 1 28 28 H 1.09000 * 109.47353 * 54.99452 * 4 2 1 29 29 H 1.08996 * 109.47048 * 299.99312 * 5 4 2 30 30 H 1.08997 * 109.47373 * 60.00048 * 5 4 2 31 31 H 1.08000 * 120.00651 * 359.97438 * 7 6 5 32 32 H 1.08000 * 120.00261 * 180.22277 * 8 7 6 33 33 H 1.07997 * 119.99923 * 179.72195 * 9 8 7 34 34 H 1.08002 * 119.99621 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.00167 * 179.97438 * 11 10 9 36 36 H 1.00902 * 111.00120 * 27.59140 * 12 2 1 37 37 H 1.09003 * 109.47230 * 303.31342 * 15 13 12 38 38 H 1.09003 * 109.47428 * 63.30894 * 15 13 12 39 39 H 1.08994 * 109.47491 * 183.30604 * 15 13 12 40 40 H 0.96999 * 120.00184 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0673 -1.3241 -2.5439 7 6 4.4014 -2.6639 -2.4798 8 6 4.8577 -3.3172 -3.6094 9 6 4.9897 -2.6281 -4.8005 10 6 4.6604 -1.2869 -4.8632 11 6 4.1988 -0.6351 -3.7351 12 7 2.0197 -0.6925 1.1994 13 6 2.3384 0.2651 2.2668 14 1 2.5231 1.2470 1.8310 15 6 1.1621 0.3528 3.2412 16 6 3.5687 -0.1964 3.0048 17 1 4.0640 -1.1099 2.7106 18 6 4.0613 0.5471 4.0563 19 7 5.1346 0.1441 4.7007 20 14 3.2042 2.1267 4.5657 21 1 2.1721 1.8222 5.5890 22 1 4.2009 3.0699 5.1332 23 1 2.5580 2.7441 3.3796 24 1 -0.3634 0.4168 -0.9393 25 1 -0.3633 -1.0220 0.1086 26 1 -0.3633 0.6049 0.8308 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8532 0.4371 -1.3574 30 1 3.9995 -1.0727 -0.4260 31 1 4.3029 -3.2012 -1.5482 32 1 5.1153 -4.3649 -3.5603 33 1 5.3504 -3.1374 -5.6819 34 1 4.7640 -0.7484 -5.7937 35 1 3.9419 0.4128 -3.7839 36 1 1.3532 -1.3799 1.5175 37 1 0.2592 0.6296 2.6969 38 1 1.0147 -0.6148 3.7210 39 1 1.3741 1.1060 4.0000 40 1 5.4814 0.6673 5.4402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044482662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:38 Heat of formation + Delta-G solvation = 13.115607 kcal Electronic energy + Delta-G solvation = -17715.178049 eV Core-core repulsion = 15108.181348 eV Total energy + Delta-G solvation = -2606.996701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.15527 -37.32768 -34.17302 -32.50171 -31.05836 -30.74114 -28.28161 -27.53379 -24.96800 -23.78855 -22.40742 -20.78874 -20.31087 -20.13829 -16.60434 -16.52042 -15.39455 -15.01315 -14.95901 -14.49278 -14.12275 -13.55210 -13.29956 -13.03538 -12.86864 -12.72387 -12.51575 -12.44096 -12.04917 -11.75472 -11.35460 -11.22930 -11.02222 -10.96451 -10.69691 -10.51337 -10.24808 -10.23009 -10.05773 -9.42416 -9.08421 -8.78833 -8.52254 -8.48285 -7.34847 -6.00681 -3.96873 1.52186 1.53820 3.27137 3.36409 3.39688 3.93927 4.43242 4.96008 4.99679 5.02943 5.09139 5.23894 5.28773 5.37913 5.52414 5.61233 5.66307 5.74843 5.77814 5.97412 6.03431 6.06074 6.13498 6.23118 6.26062 6.31923 6.34907 6.47579 6.56123 6.60023 6.61619 6.64778 6.77394 6.80424 7.00155 7.14450 7.19088 7.78304 7.99229 8.38463 8.75800 9.12453 9.62855 11.13086 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.005127 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.665469 B = 5460.498950 C = 6030.222293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.069 0.931 4 C -0.091 4.091 5 C -0.079 4.079 6 C -0.067 4.067 7 C -0.115 4.115 8 C -0.121 4.121 9 C -0.136 4.136 10 C -0.123 4.123 11 C -0.124 4.124 12 N -0.665 5.665 13 C 0.183 3.817 14 H 0.028 0.972 15 C -0.181 4.181 16 C -0.492 4.492 17 H 0.082 0.918 18 C 0.065 3.935 19 N -0.903 5.903 20 Si 0.884 3.116 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.271 1.271 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.329 0.671 37 H 0.028 0.972 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -2.306 -15.912 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.033 4.033 3 H 0.087 0.913 4 C -0.130 4.130 5 C -0.117 4.117 6 C -0.067 4.067 7 C -0.133 4.133 8 C -0.139 4.139 9 C -0.154 4.154 10 C -0.141 4.141 11 C -0.142 4.142 12 N -0.294 5.294 13 C 0.074 3.926 14 H 0.046 0.954 15 C -0.239 4.239 16 C -0.531 4.531 17 H 0.100 0.900 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.716 3.284 21 H -0.209 1.209 22 H -0.225 1.225 23 H -0.196 1.196 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.839 -2.299 -15.987 16.861 hybrid contribution -1.345 1.187 0.744 1.942 sum -6.184 -1.111 -15.243 16.487 Atomic orbital electron populations 1.22562 0.98123 1.01596 1.01378 1.21723 0.91598 0.97767 0.92186 0.91264 1.21495 0.94588 1.00637 0.96232 1.20609 0.95878 0.99916 0.95249 1.20208 0.96760 0.94121 0.95577 1.21188 0.99028 0.94495 0.98605 1.21144 0.99921 0.99710 0.93121 1.21054 1.01763 0.94791 0.97817 1.21082 0.99955 0.94868 0.98220 1.21087 1.00551 0.99846 0.92685 1.60624 1.46833 1.16275 1.05671 1.19755 0.93297 0.91599 0.87967 0.95383 1.22895 0.98864 1.01274 1.00912 1.21046 1.08521 1.10219 1.13281 0.90024 1.24950 0.94980 0.97280 0.96315 1.69886 1.22841 1.39150 1.22317 0.86924 0.78430 0.84226 0.78868 1.20904 1.22546 1.19640 0.93006 0.92723 0.92803 0.92198 0.93072 0.91746 0.88442 0.85724 0.86450 0.86705 0.86634 0.86404 0.85302 0.95353 0.92592 0.93944 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.18 37.16 0.34 -2.08 16 2 C 0.08 1.25 2.68 -67.71 -0.18 1.07 16 3 H 0.07 1.19 7.11 -51.93 -0.37 0.83 16 4 C -0.09 -1.31 4.87 -26.73 -0.13 -1.44 16 5 C -0.08 -1.23 5.23 -27.88 -0.15 -1.37 16 6 C -0.07 -0.95 5.13 -104.62 -0.54 -1.49 16 7 C -0.12 -1.59 9.70 -39.58 -0.38 -1.97 16 8 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 9 C -0.14 -1.55 10.05 -39.58 -0.40 -1.95 16 10 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 11 C -0.12 -1.59 9.70 -39.59 -0.38 -1.98 16 12 N -0.66 -12.76 5.57 -100.95 -0.56 -13.32 16 13 C 0.18 4.18 2.27 -68.86 -0.16 4.02 16 14 H 0.03 0.68 6.16 -51.93 -0.32 0.36 16 15 C -0.18 -3.82 8.57 37.16 0.32 -3.50 16 16 C -0.49 -13.66 9.42 -34.44 -0.32 -13.99 16 17 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16 19 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 20 Si 0.88 21.96 24.34 -169.99 -4.14 17.82 16 21 H -0.28 -6.85 6.90 56.52 0.39 -6.46 16 22 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.70 8.00 -51.93 -0.42 0.29 16 26 H 0.05 0.77 6.53 -51.93 -0.34 0.43 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 30 H 0.10 1.78 7.69 -51.93 -0.40 1.38 16 31 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.33 5.96 7.78 -39.29 -0.31 5.66 16 37 H 0.03 0.51 6.49 -51.93 -0.34 0.17 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.04 0.95 3.35 -51.93 -0.17 0.78 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 317.19 15.07 4.78 4.78 Total: -1.00 -29.72 317.19 -8.51 -38.23 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.49 Total: 6.02 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -2.87 Total: -26.60 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.21 Total: -40.25 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.72 -8.51 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044482662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.346 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds