Wall clock time and date at job start Mon Mar 30 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47316 * 2 1 4 4 C 1.53003 * 109.47395 * 240.00344 * 2 1 3 5 5 C 1.53004 * 109.47245 * 174.99935 * 4 2 1 6 6 C 1.50703 * 109.46894 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99688 * 269.72653 * 6 5 4 8 8 C 1.38238 * 119.99826 * 179.76838 * 7 6 5 9 9 C 1.38244 * 119.99907 * 0.50265 * 8 7 6 10 10 C 1.38238 * 119.99609 * 359.74897 * 9 8 7 11 11 C 1.38227 * 120.00145 * 359.97438 * 10 9 8 12 12 N 1.46898 * 109.47522 * 119.99994 * 2 1 3 13 13 C 1.46902 * 110.99802 * 263.64120 * 12 2 1 14 14 H 1.09002 * 109.47487 * 337.65191 * 13 12 2 15 15 C 1.53001 * 109.47066 * 97.65053 * 13 12 2 16 16 C 1.50700 * 109.47017 * 217.64986 * 13 12 2 17 17 H 1.08001 * 120.00220 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99958 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00068 * 179.97438 * 18 16 13 20 20 Si 1.86796 * 119.99908 * 359.97438 * 18 16 13 21 21 H 1.48499 * 109.47446 * 89.99771 * 20 18 16 22 22 H 1.48497 * 109.47332 * 210.00103 * 20 18 16 23 23 H 1.48504 * 109.47445 * 329.99960 * 20 18 16 24 24 H 1.09000 * 109.47324 * 66.07011 * 1 2 3 25 25 H 1.09005 * 109.46865 * 186.06416 * 1 2 3 26 26 H 1.08999 * 109.46949 * 306.05850 * 1 2 3 27 27 H 1.09003 * 109.46913 * 294.99650 * 4 2 1 28 28 H 1.09000 * 109.47353 * 54.99452 * 4 2 1 29 29 H 1.08996 * 109.47048 * 299.99312 * 5 4 2 30 30 H 1.08997 * 109.47373 * 60.00048 * 5 4 2 31 31 H 1.08000 * 120.00651 * 359.97438 * 7 6 5 32 32 H 1.08000 * 120.00261 * 180.22277 * 8 7 6 33 33 H 1.07997 * 119.99923 * 179.72195 * 9 8 7 34 34 H 1.08002 * 119.99621 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.00167 * 179.97438 * 11 10 9 36 36 H 1.00902 * 111.00120 * 27.59140 * 12 2 1 37 37 H 1.09003 * 109.47230 * 303.31342 * 15 13 12 38 38 H 1.09003 * 109.47428 * 63.30894 * 15 13 12 39 39 H 1.08994 * 109.47491 * 183.30604 * 15 13 12 40 40 H 0.96999 * 120.00184 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0673 -1.3241 -2.5439 7 6 4.4014 -2.6639 -2.4798 8 6 4.8577 -3.3172 -3.6094 9 6 4.9897 -2.6281 -4.8005 10 6 4.6604 -1.2869 -4.8632 11 6 4.1988 -0.6351 -3.7351 12 7 2.0197 -0.6925 1.1994 13 6 2.3384 0.2651 2.2668 14 1 2.5231 1.2470 1.8310 15 6 1.1621 0.3528 3.2412 16 6 3.5687 -0.1964 3.0048 17 1 4.0640 -1.1099 2.7106 18 6 4.0613 0.5471 4.0563 19 7 5.1346 0.1441 4.7007 20 14 3.2042 2.1267 4.5657 21 1 2.1721 1.8222 5.5890 22 1 4.2009 3.0699 5.1332 23 1 2.5580 2.7441 3.3796 24 1 -0.3634 0.4168 -0.9393 25 1 -0.3633 -1.0220 0.1086 26 1 -0.3633 0.6049 0.8308 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8532 0.4371 -1.3574 30 1 3.9995 -1.0727 -0.4260 31 1 4.3029 -3.2012 -1.5482 32 1 5.1153 -4.3649 -3.5603 33 1 5.3504 -3.1374 -5.6819 34 1 4.7640 -0.7484 -5.7937 35 1 3.9419 0.4128 -3.7839 36 1 1.3532 -1.3799 1.5175 37 1 0.2592 0.6296 2.6969 38 1 1.0147 -0.6148 3.7210 39 1 1.3741 1.1060 4.0000 40 1 5.4814 0.6673 5.4402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044482662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:38 Heat of formation + Delta-G solvation = -4.573844 kcal Electronic energy + Delta-G solvation = -17715.945121 eV Core-core repulsion = 15108.181348 eV Total energy + Delta-G solvation = -2607.763773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16747 -38.78002 -35.74628 -34.16350 -32.68300 -31.69558 -29.50331 -28.94481 -27.02382 -24.91332 -23.36953 -22.25247 -21.82369 -21.42412 -18.62992 -17.52660 -17.03716 -16.42120 -15.98923 -15.81865 -15.71665 -14.84830 -14.65103 -14.48243 -14.19533 -14.10012 -13.95328 -13.63810 -13.48169 -13.03863 -12.87740 -12.78918 -12.46449 -12.27935 -12.01538 -11.95929 -11.73175 -11.59339 -11.48000 -11.39265 -10.93646 -10.69478 -9.75536 -9.51023 -8.88738 -8.23617 -6.24363 0.54216 0.56583 1.29690 1.35042 1.44903 2.33918 2.95930 3.10553 3.54718 3.85452 4.04583 4.15391 4.24910 4.33501 4.36857 4.45617 4.50660 4.56633 4.59954 4.69269 4.73712 4.76912 4.81489 4.89773 4.98818 5.05369 5.15238 5.22336 5.24359 5.33585 5.38154 5.44846 5.55521 5.65943 5.68165 5.72773 5.89418 6.13695 6.21583 6.78186 6.83268 6.89232 7.40509 8.94185 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.005127 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.665469 B = 5460.498950 C = 6030.222293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 H 0.057 0.943 4 C -0.081 4.081 5 C -0.072 4.072 6 C -0.085 4.085 7 C -0.137 4.137 8 C -0.126 4.126 9 C -0.135 4.135 10 C -0.123 4.123 11 C -0.133 4.133 12 N -0.676 5.676 13 C 0.189 3.811 14 H 0.022 0.978 15 C -0.175 4.175 16 C -0.494 4.494 17 H 0.034 0.966 18 C 0.006 3.994 19 N -0.955 5.955 20 Si 0.951 3.049 21 H -0.268 1.268 22 H -0.301 1.301 23 H -0.251 1.251 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.336 0.664 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.032 0.968 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 -1.391 -18.141 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.033 4.033 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.110 4.110 6 C -0.085 4.085 7 C -0.155 4.155 8 C -0.144 4.144 9 C -0.153 4.153 10 C -0.141 4.141 11 C -0.151 4.151 12 N -0.307 5.307 13 C 0.080 3.920 14 H 0.040 0.960 15 C -0.233 4.233 16 C -0.533 4.533 17 H 0.052 0.948 18 C -0.190 4.190 19 N -0.596 5.596 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.230 1.230 23 H -0.175 1.175 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.926 -1.396 -18.243 19.563 hybrid contribution -0.620 0.785 1.321 1.657 sum -7.546 -0.611 -16.921 18.538 Atomic orbital electron populations 1.22453 0.95527 1.02363 1.02500 1.21776 0.93676 0.96813 0.91044 0.92510 1.21421 0.93610 1.00580 0.96317 1.20440 0.96821 0.99170 0.94538 1.20145 0.98299 0.94446 0.95654 1.21246 1.00448 0.94722 0.99100 1.21411 0.99322 1.00774 0.92873 1.21451 1.00605 0.94901 0.98359 1.21450 0.98676 0.95175 0.98780 1.21272 1.00725 1.00500 0.92554 1.60435 1.48256 1.16244 1.05733 1.19489 0.92105 0.91567 0.88862 0.96027 1.22757 0.99263 1.01027 1.00287 1.21358 1.10135 1.08379 1.13429 0.94808 1.25809 0.95656 1.01112 0.96458 1.70058 1.25027 1.41121 1.23415 0.85835 0.77429 0.79565 0.79317 1.19450 1.22951 1.17498 0.90758 0.91814 0.93097 0.92293 0.90763 0.92415 0.92431 0.86921 0.84567 0.83769 0.83803 0.85250 0.84560 0.91771 0.92732 0.94924 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 9.18 71.98 0.66 -3.45 16 2 C 0.08 2.37 2.68 44.92 0.12 2.49 16 3 H 0.06 1.90 7.11 -2.39 -0.02 1.88 16 4 C -0.08 -2.26 4.87 30.60 0.15 -2.12 16 5 C -0.07 -2.31 5.23 29.85 0.16 -2.15 16 6 C -0.09 -2.45 5.13 -19.87 -0.10 -2.56 16 7 C -0.14 -3.86 9.70 22.27 0.22 -3.64 16 8 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 9 C -0.14 -2.72 10.05 22.27 0.22 -2.50 16 10 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 11 C -0.13 -3.23 9.70 22.27 0.22 -3.02 16 12 N -0.68 -26.02 5.57 -473.31 -2.64 -28.66 16 13 C 0.19 8.62 2.27 44.17 0.10 8.72 16 14 H 0.02 1.03 6.16 -2.39 -0.01 1.01 16 15 C -0.17 -7.03 8.57 71.98 0.62 -6.41 16 16 C -0.49 -28.47 9.42 25.60 0.24 -28.23 16 17 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 18 C 0.01 0.33 5.45 84.66 0.46 0.79 16 19 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 20 Si 0.95 45.42 24.34 68.60 1.67 47.09 16 21 H -0.27 -12.17 6.90 99.48 0.69 -11.49 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 23 H -0.25 -11.06 6.53 99.48 0.65 -10.41 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.44 8.00 -2.38 -0.02 1.42 16 26 H 0.05 1.27 6.53 -2.39 -0.02 1.25 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.86 8.09 -2.39 -0.02 1.84 16 30 H 0.06 2.27 7.69 -2.39 -0.02 2.26 16 31 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.34 12.00 7.78 -89.69 -0.70 11.31 16 37 H 0.06 2.12 6.49 -2.39 -0.02 2.10 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.03 1.37 3.35 -2.39 -0.01 1.36 16 40 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -66.79 317.19 3.07 -63.72 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.23 Total: 25.52 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 3.51 Total: -47.05 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.34 Total: -89.28 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.09 kcal Total: -66.79 3.07 -63.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044482662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.144 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds