Wall clock time and date at job start Mon Mar 30 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47202 * 2 1 4 4 C 1.50701 * 109.47293 * 240.00003 * 2 1 3 5 5 H 1.08002 * 120.00045 * 239.99513 * 4 2 1 6 6 C 1.37873 * 119.99968 * 59.99981 * 4 2 1 7 7 N 1.31519 * 119.99972 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00329 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46822 * 59.99722 * 8 6 4 10 10 H 1.48498 * 109.47318 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47021 * 300.00055 * 8 6 4 12 12 N 1.46899 * 109.47460 * 119.99839 * 2 1 3 13 13 C 1.46903 * 111.00356 * 207.90468 * 12 2 1 14 14 H 1.09000 * 109.47123 * 325.37316 * 13 12 2 15 15 C 1.53008 * 109.47037 * 85.36999 * 13 12 2 16 16 C 1.52997 * 109.47539 * 205.37046 * 13 12 2 17 17 C 1.52998 * 109.46766 * 64.99541 * 16 13 12 18 18 C 1.50707 * 109.46970 * 179.97438 * 17 16 13 19 19 C 1.38235 * 120.00294 * 269.72987 * 18 17 16 20 20 C 1.38226 * 119.99960 * 179.76227 * 19 18 17 21 21 C 1.38232 * 120.00247 * 0.51476 * 20 19 18 22 22 C 1.38236 * 119.99840 * 359.73872 * 21 20 19 23 23 C 1.38232 * 120.00057 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47751 * 59.93555 * 1 2 3 25 25 H 1.09005 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47556 * 299.93055 * 1 2 3 27 27 H 0.97001 * 120.00108 * 180.02562 * 7 6 4 28 28 H 1.00901 * 111.00320 * 83.94785 * 12 2 1 29 29 H 1.08996 * 109.46807 * 55.00365 * 15 13 12 30 30 H 1.08993 * 109.46785 * 175.00817 * 15 13 12 31 31 H 1.09006 * 109.46633 * 295.00178 * 15 13 12 32 32 H 1.08997 * 109.47141 * 184.99729 * 16 13 12 33 33 H 1.09002 * 109.46732 * 305.00148 * 16 13 12 34 34 H 1.08997 * 109.47444 * 300.00003 * 17 16 13 35 35 H 1.09002 * 109.46999 * 60.00771 * 17 16 13 36 36 H 1.08002 * 119.99852 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.99980 * 180.22827 * 20 19 18 38 38 H 1.08006 * 120.00567 * 179.72472 * 21 20 19 39 39 H 1.08005 * 120.00257 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00073 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 7 2.0197 -0.6924 1.1994 13 6 3.3378 -0.1828 1.6003 14 1 3.9108 0.0815 0.7115 15 6 3.1596 1.0568 2.4794 16 6 4.0847 -1.2623 2.3862 17 6 4.3726 -2.4530 1.4697 18 6 5.1089 -3.5161 2.2437 19 6 6.4907 -3.5127 2.2799 20 6 7.1658 -4.4849 2.9939 21 6 6.4594 -5.4669 3.6629 22 6 5.0776 -5.4734 3.6223 23 6 4.4024 -4.4983 2.9124 24 1 -0.3634 0.5148 -0.8893 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5127 0.8906 27 1 0.7080 1.1608 -3.4844 28 1 2.0466 -1.6907 1.0550 29 1 2.5126 0.8143 3.3225 30 1 4.1317 1.3827 2.8493 31 1 2.7074 1.8564 1.8926 32 1 5.0244 -0.8553 2.7594 33 1 3.4716 -1.5900 3.2259 34 1 3.4329 -2.8600 1.0965 35 1 4.9857 -2.1253 0.6301 36 1 7.0428 -2.7484 1.7532 37 1 8.2454 -4.4801 3.0252 38 1 6.9869 -6.2292 4.2171 39 1 4.5256 -6.2408 4.1447 40 1 3.3229 -4.5037 2.8804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044482663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:41 Heat of formation + Delta-G solvation = 1.063190 kcal Electronic energy + Delta-G solvation = -17760.905699 eV Core-core repulsion = 15153.386366 eV Total energy + Delta-G solvation = -2607.519333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.27481 -37.05265 -34.06972 -32.45070 -30.84000 -30.63133 -28.19746 -27.05196 -25.01280 -23.77479 -22.51201 -20.85112 -20.12299 -19.49539 -16.79949 -16.50460 -15.40248 -15.13994 -14.81698 -14.54226 -13.96863 -13.49284 -13.37076 -13.00856 -12.69939 -12.59535 -12.22935 -11.85596 -11.61763 -11.35360 -11.15873 -11.07519 -11.02225 -10.88548 -10.65601 -10.50474 -10.24935 -10.08739 -9.93401 -9.62238 -9.03449 -8.88186 -8.56959 -8.37438 -7.21400 -5.97795 -4.09949 1.42169 1.44134 3.28641 3.33942 3.36275 3.83943 4.40737 4.87653 4.91160 5.01513 5.16066 5.24631 5.32034 5.46013 5.48456 5.58160 5.66901 5.68849 5.99007 6.06253 6.14263 6.20489 6.25194 6.27404 6.46032 6.53131 6.54186 6.58819 6.75675 6.81143 6.93454 6.94995 7.07345 7.20437 7.37316 7.56818 7.77326 8.13278 8.21050 8.37911 8.72665 9.03738 9.57703 11.03328 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.005503 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.663050 B = 5086.844792 C = 5792.171339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.208 3.792 3 H 0.031 0.969 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.279 1.279 12 N -0.688 5.688 13 C 0.085 3.915 14 H 0.046 0.954 15 C -0.134 4.134 16 C -0.108 4.108 17 C -0.087 4.087 18 C -0.068 4.068 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.120 4.120 23 C -0.117 4.117 24 H 0.080 0.920 25 H 0.023 0.977 26 H 0.011 0.989 27 H 0.261 0.739 28 H 0.327 0.673 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 -7.973 10.819 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.049 0.951 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.320 5.320 13 C -0.025 4.025 14 H 0.064 0.936 15 C -0.193 4.193 16 C -0.146 4.146 17 C -0.125 4.125 18 C -0.068 4.068 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.098 0.902 25 H 0.042 0.958 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.574 -7.427 11.110 15.878 hybrid contribution 0.928 -0.909 -1.699 2.139 sum 9.502 -8.337 9.411 15.760 Atomic orbital electron populations 1.21680 0.98021 0.98851 0.99721 1.19156 0.92242 0.94098 0.84543 0.95067 1.21810 1.31691 1.12685 0.91904 0.92926 1.24924 0.94885 0.94858 0.98863 1.69879 1.36377 1.22779 1.23472 0.86744 0.79145 0.79920 0.82693 1.20303 1.21247 1.20424 1.61008 1.23292 1.08668 1.39025 1.21369 0.91036 0.93688 0.96422 0.93598 1.21760 0.99864 0.97883 0.99744 1.21711 0.99814 0.94780 0.98291 1.20741 1.00388 0.93857 0.97504 1.20081 0.93723 0.95958 0.97007 1.21097 0.94007 0.98963 0.99781 1.21103 0.99595 0.95323 0.97901 1.21075 0.94399 0.99117 1.00623 1.21128 0.94459 0.98776 0.99452 1.21140 1.00136 0.94705 0.97561 0.90180 0.95829 0.96950 0.92896 0.85470 0.92817 0.93904 0.92852 0.92302 0.91664 0.90298 0.90894 0.86200 0.86458 0.86570 0.86366 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.29 37.15 0.35 -2.74 16 2 C 0.21 5.19 2.38 -68.87 -0.16 5.02 16 3 H 0.03 0.86 7.18 -51.93 -0.37 0.49 16 4 C -0.54 -14.52 8.41 -34.44 -0.29 -14.81 16 5 H 0.05 1.39 7.70 -52.49 -0.40 0.98 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.60 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.69 -14.40 6.06 -100.95 -0.61 -15.01 16 13 C 0.09 1.57 2.45 -67.71 -0.17 1.40 16 14 H 0.05 0.96 7.74 -51.93 -0.40 0.56 16 15 C -0.13 -2.28 9.38 37.16 0.35 -1.93 16 16 C -0.11 -1.64 4.79 -26.73 -0.13 -1.77 16 17 C -0.09 -1.31 5.18 -27.88 -0.14 -1.46 16 18 C -0.07 -0.93 5.13 -104.62 -0.54 -1.46 16 19 C -0.12 -1.52 9.70 -39.59 -0.38 -1.91 16 20 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 21 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 23 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 24 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.33 6.70 6.08 -39.29 -0.24 6.46 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.27 6.37 -51.93 -0.33 0.94 16 35 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -28.13 324.33 -9.57 -37.70 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.66 Total: 6.02 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -2.79 Total: -25.17 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.02 Total: -39.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.13 -9.57 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044482663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.761 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds