Wall clock time and date at job start Mon Mar 30 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47202 * 2 1 4 4 C 1.50701 * 109.47293 * 240.00003 * 2 1 3 5 5 H 1.08002 * 120.00045 * 239.99513 * 4 2 1 6 6 C 1.37873 * 119.99968 * 59.99981 * 4 2 1 7 7 N 1.31519 * 119.99972 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00329 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46822 * 59.99722 * 8 6 4 10 10 H 1.48498 * 109.47318 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47021 * 300.00055 * 8 6 4 12 12 N 1.46899 * 109.47460 * 119.99839 * 2 1 3 13 13 C 1.46903 * 111.00356 * 207.90468 * 12 2 1 14 14 H 1.09000 * 109.47123 * 325.37316 * 13 12 2 15 15 C 1.53008 * 109.47037 * 85.36999 * 13 12 2 16 16 C 1.52997 * 109.47539 * 205.37046 * 13 12 2 17 17 C 1.52998 * 109.46766 * 64.99541 * 16 13 12 18 18 C 1.50707 * 109.46970 * 179.97438 * 17 16 13 19 19 C 1.38235 * 120.00294 * 269.72987 * 18 17 16 20 20 C 1.38226 * 119.99960 * 179.76227 * 19 18 17 21 21 C 1.38232 * 120.00247 * 0.51476 * 20 19 18 22 22 C 1.38236 * 119.99840 * 359.73872 * 21 20 19 23 23 C 1.38232 * 120.00057 * 0.02562 * 22 21 20 24 24 H 1.08996 * 109.47751 * 59.93555 * 1 2 3 25 25 H 1.09005 * 109.46795 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47556 * 299.93055 * 1 2 3 27 27 H 0.97001 * 120.00108 * 180.02562 * 7 6 4 28 28 H 1.00901 * 111.00320 * 83.94785 * 12 2 1 29 29 H 1.08996 * 109.46807 * 55.00365 * 15 13 12 30 30 H 1.08993 * 109.46785 * 175.00817 * 15 13 12 31 31 H 1.09006 * 109.46633 * 295.00178 * 15 13 12 32 32 H 1.08997 * 109.47141 * 184.99729 * 16 13 12 33 33 H 1.09002 * 109.46732 * 305.00148 * 16 13 12 34 34 H 1.08997 * 109.47444 * 300.00003 * 17 16 13 35 35 H 1.09002 * 109.46999 * 60.00771 * 17 16 13 36 36 H 1.08002 * 119.99852 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.99980 * 180.22827 * 20 19 18 38 38 H 1.08006 * 120.00567 * 179.72472 * 21 20 19 39 39 H 1.08005 * 120.00257 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00073 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 7 2.0197 -0.6924 1.1994 13 6 3.3378 -0.1828 1.6003 14 1 3.9108 0.0815 0.7115 15 6 3.1596 1.0568 2.4794 16 6 4.0847 -1.2623 2.3862 17 6 4.3726 -2.4530 1.4697 18 6 5.1089 -3.5161 2.2437 19 6 6.4907 -3.5127 2.2799 20 6 7.1658 -4.4849 2.9939 21 6 6.4594 -5.4669 3.6629 22 6 5.0776 -5.4734 3.6223 23 6 4.4024 -4.4983 2.9124 24 1 -0.3634 0.5148 -0.8893 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5127 0.8906 27 1 0.7080 1.1608 -3.4844 28 1 2.0466 -1.6907 1.0550 29 1 2.5126 0.8143 3.3225 30 1 4.1317 1.3827 2.8493 31 1 2.7074 1.8564 1.8926 32 1 5.0244 -0.8553 2.7594 33 1 3.4716 -1.5900 3.2259 34 1 3.4329 -2.8600 1.0965 35 1 4.9857 -2.1253 0.6301 36 1 7.0428 -2.7484 1.7532 37 1 8.2454 -4.4801 3.0252 38 1 6.9869 -6.2292 4.2171 39 1 4.5256 -6.2408 4.1447 40 1 3.3229 -4.5037 2.8804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044482663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:40 Heat of formation + Delta-G solvation = -13.145005 kcal Electronic energy + Delta-G solvation = -17761.521813 eV Core-core repulsion = 15153.386366 eV Total energy + Delta-G solvation = -2608.135446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23675 -38.61539 -35.76702 -33.95199 -32.34144 -31.72068 -29.35480 -28.84062 -27.13443 -24.96345 -23.40289 -22.13444 -21.80066 -21.00597 -18.65736 -17.56972 -16.94447 -16.52258 -16.16492 -15.85545 -15.47350 -14.95703 -14.40385 -14.31406 -14.04155 -13.92324 -13.74180 -13.36945 -13.24126 -12.91157 -12.85254 -12.78738 -12.37716 -12.29380 -12.15139 -12.00346 -11.87238 -11.70703 -11.52170 -11.23704 -11.06751 -10.49492 -9.77551 -9.52798 -9.02848 -8.06044 -6.27027 0.50446 0.54654 1.38315 1.38978 1.46430 2.39708 2.92784 3.15218 3.69945 3.79468 3.96620 4.18367 4.24060 4.29292 4.32005 4.40245 4.65548 4.69382 4.77390 4.80725 4.86772 4.89543 4.98857 5.09434 5.16449 5.17880 5.22371 5.27998 5.30078 5.36373 5.51270 5.54009 5.63091 5.66388 5.70109 5.81599 6.08846 6.18330 6.19547 6.42756 6.86495 7.05397 7.44578 8.92017 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.005503 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.663050 B = 5086.844792 C = 5792.171339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.552 4.552 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.948 3.052 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.681 5.681 13 C 0.083 3.917 14 H 0.016 0.984 15 C -0.129 4.129 16 C -0.094 4.094 17 C -0.080 4.080 18 C -0.086 4.086 19 C -0.134 4.134 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.124 4.124 23 C -0.133 4.133 24 H 0.056 0.944 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.435 -9.620 11.966 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.774 3.226 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.200 1.200 12 N -0.313 5.313 13 C -0.027 4.027 14 H 0.035 0.965 15 C -0.187 4.187 16 C -0.131 4.131 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.151 4.151 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.002 -9.081 12.271 18.251 hybrid contribution 0.521 -0.413 -1.997 2.105 sum 10.523 -9.493 10.274 17.505 Atomic orbital electron populations 1.21533 0.97930 0.98707 0.99163 1.18938 0.92314 0.92635 0.85700 0.98210 1.22085 1.31536 1.12684 0.92843 0.92981 1.25665 0.95138 0.95564 1.01718 1.70007 1.37322 1.23958 1.24038 0.85766 0.78630 0.78925 0.79249 1.19710 1.20887 1.20022 1.60955 1.24976 1.08605 1.36729 1.21454 0.89684 0.95495 0.96058 0.96537 1.21714 1.01445 0.96328 0.99222 1.21574 1.00073 0.93720 0.97770 1.20586 0.99549 0.94359 0.97281 1.19982 0.94287 0.96244 0.98052 1.21256 0.93689 0.99830 1.00400 1.21426 1.00945 0.94711 0.97093 1.21469 0.94341 0.99320 0.99999 1.21433 0.95094 0.98687 0.98965 1.21273 1.00402 0.95210 0.98172 0.92537 0.95602 0.95645 0.92918 0.85166 0.91993 0.91156 0.95142 0.90616 0.91041 0.91919 0.92300 0.85800 0.84085 0.83780 0.84172 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.79 9.29 71.98 0.67 -5.12 16 2 C 0.21 10.90 2.38 44.17 0.11 11.01 16 3 H 0.00 0.00 7.18 -2.39 -0.02 -0.02 16 4 C -0.55 -30.11 8.41 25.60 0.22 -29.90 16 5 H 0.05 2.78 7.70 -2.91 -0.02 2.76 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -52.95 11.32 21.45 0.24 -52.71 16 8 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 N -0.68 -28.79 6.06 -473.31 -2.87 -31.66 16 13 C 0.08 3.08 2.45 44.92 0.11 3.19 16 14 H 0.02 0.71 7.74 -2.39 -0.02 0.69 16 15 C -0.13 -4.31 9.38 71.98 0.68 -3.63 16 16 C -0.09 -2.76 4.79 30.59 0.15 -2.61 16 17 C -0.08 -2.41 5.18 29.85 0.15 -2.26 16 18 C -0.09 -2.27 5.13 -19.86 -0.10 -2.37 16 19 C -0.13 -3.18 9.70 22.27 0.22 -2.97 16 20 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 21 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 22 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 23 C -0.13 -3.24 9.70 22.27 0.22 -3.02 16 24 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 25 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.33 13.64 6.08 -89.69 -0.55 13.10 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.13 7.56 -2.38 -0.02 1.11 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.05 6.37 -2.39 -0.02 2.04 16 35 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 36 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -60.24 324.33 3.37 -56.87 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.45 Total: 24.69 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 3.53 Total: -42.94 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -2.63 Total: -84.38 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -60.24 3.37 -56.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044482663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.724 kcal (2) G-P(sol) polarization free energy of solvation -60.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds