Wall clock time and date at job start Mon Mar 30 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 13 13 C 1.46903 * 110.99908 * 274.99684 * 12 2 1 14 14 H 1.09001 * 109.46941 * 35.00074 * 13 12 2 15 15 C 1.52998 * 109.47147 * 275.00225 * 13 12 2 16 16 C 1.52995 * 109.47247 * 154.99976 * 13 12 2 17 17 C 1.52998 * 109.47503 * 295.00230 * 16 13 12 18 18 C 1.50700 * 109.47564 * 180.02562 * 17 16 13 19 19 C 1.38233 * 119.99804 * 269.72417 * 18 17 16 20 20 C 1.38234 * 120.00168 * 179.76711 * 19 18 17 21 21 C 1.38237 * 119.99502 * 0.50351 * 20 19 18 22 22 C 1.38230 * 120.00028 * 359.75109 * 21 20 19 23 23 C 1.38227 * 120.00353 * 359.97438 * 22 21 20 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00396 * 38.94794 * 12 2 1 29 29 H 1.09000 * 109.47197 * 59.99804 * 15 13 12 30 30 H 1.08999 * 109.47517 * 180.02562 * 15 13 12 31 31 H 1.09001 * 109.47077 * 299.99766 * 15 13 12 32 32 H 1.09006 * 109.47294 * 55.00097 * 16 13 12 33 33 H 1.09007 * 109.47601 * 175.00063 * 16 13 12 34 34 H 1.09006 * 109.46737 * 300.00208 * 17 16 13 35 35 H 1.08996 * 109.47208 * 59.99635 * 17 16 13 36 36 H 1.08006 * 119.99846 * 359.97438 * 19 18 17 37 37 H 1.07995 * 120.00127 * 180.23555 * 20 19 18 38 38 H 1.08001 * 119.99485 * 179.72815 * 21 20 19 39 39 H 1.08007 * 119.99761 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99960 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2577 0.9329 2.2906 15 6 3.4111 0.9808 2.3223 16 6 1.9770 -0.5797 3.6453 17 6 0.5984 -1.2380 3.7277 18 6 0.4942 -2.0277 5.0070 19 6 0.8691 -3.3580 5.0304 20 6 0.7782 -4.0811 6.2050 21 6 0.3025 -3.4767 7.3536 22 6 -0.0773 -2.1478 7.3288 23 6 0.0190 -1.4232 6.1557 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7087 1.1612 -3.4844 28 1 1.4495 -1.4979 1.4100 29 1 3.4862 1.5524 1.3972 30 1 3.4580 1.6595 3.1739 31 1 4.2360 0.2705 2.3785 32 1 2.7487 -1.3495 3.6606 33 1 2.1125 0.0874 4.4967 34 1 -0.1733 -0.4682 3.7124 35 1 0.4629 -1.9051 2.8764 36 1 1.2362 -3.8315 4.1318 37 1 1.0747 -5.1194 6.2242 38 1 0.2274 -4.0429 8.2702 39 1 -0.4493 -1.6757 8.2262 40 1 -0.2782 -0.3850 6.1363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044482664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:43 Heat of formation + Delta-G solvation = 3.718340 kcal Electronic energy + Delta-G solvation = -17615.860959 eV Core-core repulsion = 15008.456762 eV Total energy + Delta-G solvation = -2607.404197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35361 -37.19525 -34.11402 -32.49593 -30.90511 -30.65696 -28.27717 -26.90026 -25.08647 -23.85974 -22.58116 -20.95774 -20.47927 -19.45767 -16.79208 -16.26627 -15.49556 -15.24886 -14.86310 -14.60474 -13.99752 -13.54375 -13.42376 -13.03292 -12.82096 -12.56875 -12.35365 -11.97106 -11.58601 -11.38113 -11.19980 -11.12241 -11.08758 -10.87418 -10.69199 -10.61897 -10.31063 -10.26455 -9.99083 -9.67975 -8.94694 -8.92329 -8.64443 -8.31346 -7.15291 -5.94169 -3.97115 1.35006 1.37662 3.36839 3.40620 3.44140 3.76980 4.47443 4.78626 4.83610 4.95637 5.09564 5.20097 5.35690 5.37307 5.38964 5.49670 5.58744 5.60958 5.88812 5.98709 6.02427 6.08724 6.18062 6.20962 6.39498 6.45958 6.47753 6.50226 6.67264 6.72261 6.74218 6.87391 6.89804 7.00290 7.17299 7.45887 7.78916 7.94559 8.34817 8.62912 8.70240 9.10227 9.68155 11.12829 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034034 B = 0.004304 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.511653 B = 6503.890588 C = 6765.822926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.082 3.918 14 H 0.034 0.966 15 C -0.134 4.134 16 C -0.110 4.110 17 C -0.087 4.087 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.133 4.133 22 C -0.121 4.121 23 C -0.121 4.121 24 H 0.004 0.996 25 H 0.087 0.913 26 H 0.026 0.974 27 H 0.259 0.741 28 H 0.324 0.676 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 -4.803 17.298 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.312 5.312 13 C -0.028 4.028 14 H 0.052 0.948 15 C -0.192 4.192 16 C -0.148 4.148 17 C -0.125 4.125 18 C -0.069 4.069 19 C -0.135 4.135 20 C -0.137 4.137 21 C -0.151 4.151 22 C -0.139 4.139 23 C -0.139 4.139 24 H 0.023 0.977 25 H 0.106 0.894 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.873 -4.598 16.981 17.614 hybrid contribution -0.751 -0.314 -0.657 1.046 sum -1.624 -4.913 16.325 17.125 Atomic orbital electron populations 1.22429 1.00909 0.99025 1.00373 1.19185 0.89381 0.94481 0.86641 0.94821 1.21143 1.30063 1.12352 0.89702 0.92091 1.24943 0.95393 0.95222 0.98981 1.69873 1.37391 1.23255 1.23334 0.86593 0.79177 0.79608 0.82167 1.20418 1.21520 1.20334 1.60890 1.58082 1.08892 1.03352 1.21444 0.96756 0.94359 0.90289 0.94804 1.21743 0.97535 0.99320 1.00647 1.21736 0.95861 0.99504 0.97684 1.20736 0.98526 0.98973 0.94252 1.20022 0.97163 0.94195 0.95566 1.21154 0.99969 0.94018 0.98334 1.21144 0.99767 0.99804 0.93035 1.21091 1.00488 0.95266 0.98225 1.21107 1.00332 0.94593 0.97890 1.21079 1.00312 0.99871 0.92603 0.97690 0.89392 0.95501 0.93097 0.85790 0.92367 0.94028 0.92623 0.91281 0.92151 0.91198 0.90439 0.85805 0.86278 0.86502 0.86405 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.92 37.16 0.33 -3.72 16 2 C 0.21 5.30 2.38 -68.87 -0.16 5.13 16 3 H 0.03 0.93 7.11 -51.93 -0.37 0.57 16 4 C -0.49 -13.74 8.84 -34.44 -0.30 -14.05 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.89 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.27 6.04 -100.95 -0.61 -14.88 16 13 C 0.08 1.45 2.46 -67.71 -0.17 1.28 16 14 H 0.03 0.64 7.11 -51.93 -0.37 0.27 16 15 C -0.13 -2.30 9.40 37.16 0.35 -1.95 16 16 C -0.11 -1.58 4.79 -26.73 -0.13 -1.71 16 17 C -0.09 -1.19 5.18 -27.88 -0.14 -1.33 16 18 C -0.07 -0.88 5.13 -104.63 -0.54 -1.42 16 19 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 20 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 21 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 22 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 23 C -0.12 -1.40 9.70 -39.59 -0.38 -1.79 16 24 H 0.00 0.09 7.43 -51.93 -0.39 -0.29 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 26 H 0.03 0.62 8.13 -51.93 -0.42 0.19 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.32 6.43 6.21 -39.29 -0.24 6.19 16 29 H 0.06 1.12 7.43 -51.93 -0.39 0.73 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.08 1.12 6.37 -51.93 -0.33 0.79 16 36 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -28.88 323.08 -9.55 -38.43 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.59 Total: 5.19 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -2.82 Total: -25.00 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.02 Total: -40.14 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.88 -9.55 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044482664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.149 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds