Wall clock time and date at job start Mon Mar 30 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47061 * 59.99778 * 8 6 4 10 10 H 1.48494 * 109.47452 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46988 * 300.00348 * 8 6 4 12 12 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 13 13 C 1.46903 * 110.99908 * 274.99684 * 12 2 1 14 14 H 1.09001 * 109.46941 * 35.00074 * 13 12 2 15 15 C 1.52998 * 109.47147 * 275.00225 * 13 12 2 16 16 C 1.52995 * 109.47247 * 154.99976 * 13 12 2 17 17 C 1.52998 * 109.47503 * 295.00230 * 16 13 12 18 18 C 1.50700 * 109.47564 * 180.02562 * 17 16 13 19 19 C 1.38233 * 119.99804 * 269.72417 * 18 17 16 20 20 C 1.38234 * 120.00168 * 179.76711 * 19 18 17 21 21 C 1.38237 * 119.99502 * 0.50351 * 20 19 18 22 22 C 1.38230 * 120.00028 * 359.75109 * 21 20 19 23 23 C 1.38227 * 120.00353 * 359.97438 * 22 21 20 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00396 * 38.94794 * 12 2 1 29 29 H 1.09000 * 109.47197 * 59.99804 * 15 13 12 30 30 H 1.08999 * 109.47517 * 180.02562 * 15 13 12 31 31 H 1.09001 * 109.47077 * 299.99766 * 15 13 12 32 32 H 1.09006 * 109.47294 * 55.00097 * 16 13 12 33 33 H 1.09007 * 109.47601 * 175.00063 * 16 13 12 34 34 H 1.09006 * 109.46737 * 300.00208 * 17 16 13 35 35 H 1.08996 * 109.47208 * 59.99635 * 17 16 13 36 36 H 1.08006 * 119.99846 * 359.97438 * 19 18 17 37 37 H 1.07995 * 120.00127 * 180.23555 * 20 19 18 38 38 H 1.08001 * 119.99485 * 179.72815 * 21 20 19 39 39 H 1.08007 * 119.99761 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99960 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4193 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2577 0.9329 2.2906 15 6 3.4111 0.9808 2.3223 16 6 1.9770 -0.5797 3.6453 17 6 0.5984 -1.2380 3.7277 18 6 0.4942 -2.0277 5.0070 19 6 0.8691 -3.3580 5.0304 20 6 0.7782 -4.0811 6.2050 21 6 0.3025 -3.4767 7.3536 22 6 -0.0773 -2.1478 7.3288 23 6 0.0190 -1.4232 6.1557 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7087 1.1612 -3.4844 28 1 1.4495 -1.4979 1.4100 29 1 3.4862 1.5524 1.3972 30 1 3.4580 1.6595 3.1739 31 1 4.2360 0.2705 2.3785 32 1 2.7487 -1.3495 3.6606 33 1 2.1125 0.0874 4.4967 34 1 -0.1733 -0.4682 3.7124 35 1 0.4629 -1.9051 2.8764 36 1 1.2362 -3.8315 4.1318 37 1 1.0747 -5.1194 6.2242 38 1 0.2274 -4.0429 8.2702 39 1 -0.4493 -1.6757 8.2262 40 1 -0.2782 -0.3850 6.1363 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044482664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:43 Heat of formation + Delta-G solvation = -11.296755 kcal Electronic energy + Delta-G solvation = -17616.512062 eV Core-core repulsion = 15008.456762 eV Total energy + Delta-G solvation = -2608.055300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24840 -38.71309 -35.76835 -33.98389 -32.33384 -31.71883 -29.37972 -28.68411 -27.20941 -24.99669 -23.40536 -22.41536 -21.81489 -20.99623 -18.33858 -17.59560 -16.95893 -16.57896 -16.18321 -15.87066 -15.50719 -14.84367 -14.47196 -14.31238 -14.06723 -14.00301 -13.70520 -13.48794 -13.16874 -12.93200 -12.85168 -12.75988 -12.36609 -12.29921 -12.17830 -12.11994 -11.87386 -11.79618 -11.54811 -11.29351 -10.96234 -10.45888 -9.77479 -9.53045 -8.89605 -8.07589 -6.18543 0.50206 0.54710 1.43467 1.45198 1.52882 2.45236 2.92525 3.20538 3.67304 3.77452 3.95828 4.16473 4.22442 4.26407 4.31927 4.39315 4.58981 4.68524 4.74345 4.75481 4.79355 4.86378 4.90446 4.95426 5.05152 5.11188 5.17706 5.22235 5.26546 5.37284 5.46210 5.51273 5.63055 5.66840 5.71632 5.80325 5.87806 6.18276 6.31900 6.71776 6.90854 7.00157 7.51668 8.97703 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034034 B = 0.004304 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.511653 B = 6503.890588 C = 6765.822926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.080 3.920 14 H 0.023 0.977 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.081 4.081 18 C -0.086 4.086 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.132 4.132 24 H 0.023 0.977 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.330 0.670 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 -5.782 18.990 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.315 5.315 13 C -0.030 4.030 14 H 0.041 0.959 15 C -0.189 4.189 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.152 4.152 22 C -0.142 4.142 23 C -0.150 4.150 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.802 -5.585 18.691 19.524 hybrid contribution -0.774 -0.006 -1.096 1.342 sum -1.576 -5.590 17.595 18.529 Atomic orbital electron populations 1.22225 1.00237 0.99012 0.99877 1.18919 0.89749 0.92736 0.87757 0.98073 1.21456 1.30298 1.12403 0.91199 0.92842 1.25708 0.95511 0.95889 1.01851 1.70005 1.38116 1.24326 1.23935 0.85601 0.78626 0.78712 0.78585 1.19638 1.21033 1.19975 1.60769 1.57819 1.09464 1.03449 1.21540 0.96644 0.94097 0.90689 0.95910 1.21718 0.97217 0.99501 1.00445 1.21592 0.96388 0.99252 0.96112 1.20609 0.97880 0.98710 0.94634 1.19961 0.98729 0.94498 0.95385 1.21285 1.00676 0.94173 0.99071 1.21427 0.99441 1.00749 0.92753 1.21465 0.99294 0.95427 0.98971 1.21441 0.99682 0.94818 0.98295 1.21273 1.00364 1.00569 0.92746 0.95756 0.92179 0.95125 0.93086 0.85089 0.95331 0.90947 0.92495 0.91463 0.90294 0.91400 0.91840 0.86038 0.84410 0.83926 0.84034 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.54 8.92 71.98 0.64 -6.89 16 2 C 0.22 11.16 2.38 44.17 0.11 11.26 16 3 H 0.00 0.08 7.11 -2.39 -0.02 0.06 16 4 C -0.51 -29.12 8.84 25.60 0.23 -28.89 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -54.10 11.32 21.44 0.24 -53.85 16 8 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.68 -28.93 6.04 -473.31 -2.86 -31.79 16 13 C 0.08 2.82 2.46 44.91 0.11 2.93 16 14 H 0.02 0.86 7.11 -2.39 -0.02 0.84 16 15 C -0.13 -4.43 9.40 71.98 0.68 -3.75 16 16 C -0.10 -2.63 4.79 30.59 0.15 -2.49 16 17 C -0.08 -2.14 5.18 29.85 0.15 -1.99 16 18 C -0.09 -2.07 5.13 -19.87 -0.10 -2.18 16 19 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 20 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 21 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 22 C -0.12 -2.26 10.05 22.26 0.22 -2.03 16 23 C -0.13 -2.81 9.70 22.27 0.22 -2.59 16 24 H 0.02 1.04 7.43 -2.39 -0.02 1.03 16 25 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 26 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.33 13.19 6.21 -89.70 -0.56 12.63 16 29 H 0.03 1.11 7.43 -2.39 -0.02 1.09 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.07 1.80 8.09 -2.38 -0.02 1.78 16 35 H 0.06 1.84 6.37 -2.39 -0.02 1.82 16 36 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -61.97 323.08 3.36 -58.61 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.44 Total: 23.32 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 3.51 Total: -42.94 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.62 Total: -85.64 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -61.97 3.36 -58.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044482664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.309 kcal (2) G-P(sol) polarization free energy of solvation -61.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds