Wall clock time and date at job start Mon Mar 30 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47207 * 2 1 4 4 C 1.50700 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.38292 * 119.92221 * 89.99824 * 4 3 2 6 6 C 1.38103 * 120.06781 * 180.02562 * 5 4 3 7 7 C 1.38907 * 119.93251 * 359.97438 * 6 5 4 8 8 N 1.39668 * 120.07688 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00181 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47289 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47131 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47130 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00100 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99896 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99699 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47046 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 120.00269 * 16 14 12 19 19 H 1.48508 * 109.46873 * 240.00304 * 16 14 12 20 20 C 1.38907 * 119.84667 * 0.25939 * 7 6 5 21 21 C 1.38108 * 119.92754 * 359.48722 * 20 7 6 22 22 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47261 * 300.00119 * 1 2 3 24 24 H 1.09000 * 109.47321 * 59.99946 * 1 2 3 25 25 H 1.08997 * 109.47261 * 239.99881 * 2 1 3 26 26 H 1.09000 * 109.47321 * 120.00054 * 2 1 3 27 27 H 1.08997 * 109.47107 * 59.99786 * 3 2 1 28 28 H 1.08997 * 109.46714 * 299.99834 * 3 2 1 29 29 H 1.07994 * 119.96476 * 0.04575 * 5 4 3 30 30 H 1.08003 * 120.03201 * 179.97438 * 6 5 4 31 31 H 0.97001 * 120.00568 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.47060 * 300.00571 * 9 8 7 33 33 H 1.09004 * 109.47073 * 60.00060 * 9 8 7 34 34 H 1.09001 * 109.46832 * 299.99854 * 10 9 8 35 35 H 1.08996 * 109.46952 * 59.99873 * 10 9 8 36 36 H 1.09001 * 109.46997 * 299.99574 * 11 10 9 37 37 H 1.09004 * 109.47298 * 59.99717 * 11 10 9 38 38 H 0.97007 * 119.99539 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.03686 * 179.72396 * 20 7 6 40 40 H 1.07998 * 119.96672 * 180.25929 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2373 1.4423 -1.1977 6 6 5.6184 1.4417 -1.2006 7 6 6.3140 1.4419 0.0017 8 7 7.7107 1.4408 0.0023 9 6 8.4428 1.4405 1.2713 10 6 9.9471 1.4399 0.9924 11 6 10.7115 1.4389 2.3177 12 6 12.1933 1.4377 2.0429 13 1 12.5537 1.4380 1.0248 14 6 13.0888 1.4372 3.0913 15 7 12.6499 1.4372 4.3310 16 14 14.9255 1.4364 2.7507 17 1 15.1569 1.4358 1.2838 18 1 15.5405 2.6484 3.3489 19 1 15.5393 0.2234 3.3486 20 6 5.6174 1.4372 1.2035 21 6 4.2363 1.4431 1.1994 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.6959 1.4429 -2.1321 30 1 6.1569 1.4411 -2.1368 31 1 8.1961 1.4403 -0.8375 32 1 8.1798 2.3307 1.8427 33 1 8.1785 0.5508 1.8430 34 1 10.2102 0.5498 0.4209 35 1 10.2109 2.3298 0.4209 36 1 10.4485 2.3288 2.8895 37 1 10.4475 0.5488 2.8888 38 1 13.2800 1.4365 5.0686 39 1 6.1552 1.4329 2.1401 40 1 3.6941 1.4437 2.1334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049537628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:07 Heat of formation + Delta-G solvation = -13.738821 kcal Electronic energy + Delta-G solvation = -16643.773697 eV Core-core repulsion = 14035.612501 eV Total energy + Delta-G solvation = -2608.161196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.44955 -36.58513 -34.75357 -33.37153 -31.58524 -30.73933 -29.52679 -26.84746 -25.16039 -23.46294 -22.33862 -21.66537 -20.43451 -20.27712 -17.02963 -16.46723 -15.79385 -15.34218 -14.81658 -14.80204 -14.48241 -13.99276 -13.64941 -13.59867 -13.23079 -12.92670 -12.54630 -12.31793 -12.08973 -11.81295 -11.73476 -11.32332 -10.99247 -10.95792 -10.90611 -10.74855 -10.55939 -10.54293 -9.97814 -9.52475 -9.49194 -9.13704 -8.77583 -8.40045 -7.09773 -6.04733 -4.07420 1.59320 1.75519 3.28310 3.35854 3.39688 3.75866 4.00358 4.42693 4.79277 4.80288 4.98440 5.03819 5.15944 5.31367 5.35233 5.38203 5.56964 5.61597 5.64638 5.69605 5.73476 5.76082 5.83058 5.97164 6.03477 6.12324 6.16506 6.19270 6.49553 6.57560 6.58038 6.65811 6.84686 6.96550 7.07061 7.59896 7.61263 7.72831 7.94154 8.00351 8.36148 8.99343 9.56975 11.06661 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.062609 B = 0.002898 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.114199 B = 9657.878005 C = 9952.812407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.069 4.069 4 C -0.156 4.156 5 C -0.069 4.069 6 C -0.203 4.203 7 C 0.221 3.779 8 N -0.744 5.744 9 C 0.121 3.879 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.198 4.198 21 C -0.067 4.067 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.397 0.603 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.581 -0.825 -9.214 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.106 4.106 4 C -0.158 4.158 5 C -0.088 4.088 6 C -0.226 4.226 7 C 0.116 3.884 8 N -0.372 5.372 9 C -0.003 4.003 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.220 4.220 21 C -0.086 4.086 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.231 0.769 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.140 0.860 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.404 -0.825 -8.824 22.246 hybrid contribution 1.350 -0.006 -0.355 1.396 sum -19.054 -0.831 -9.179 21.166 Atomic orbital electron populations 1.21799 0.96145 1.01444 1.01643 1.21541 0.95138 0.96788 1.02294 1.20447 0.91483 0.96619 1.02048 1.19522 0.95083 1.08124 0.93110 1.20652 0.93230 0.97827 0.97100 1.20544 0.94361 1.11558 0.96117 1.17937 0.84059 0.92662 0.93784 1.45034 1.02232 1.80900 1.08993 1.21599 0.93157 1.00594 0.84902 1.21844 0.91149 1.00862 1.01949 1.19034 0.94314 0.97504 0.90517 1.21249 0.91315 1.50719 0.92687 0.92616 1.25034 0.99089 0.95263 0.95132 1.69973 1.34419 1.50741 0.98230 0.86521 0.85402 0.77620 0.78369 1.19756 1.20968 1.20970 1.20705 0.94273 1.10303 0.96766 1.20733 0.93360 0.97333 0.97177 0.92919 0.92818 0.92889 0.92061 0.91963 0.91698 0.91780 0.86780 0.86636 0.76899 0.92620 0.92618 0.92816 0.92811 0.96350 0.96348 0.92980 0.86013 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.15 0.37 -0.70 16 2 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 3 C -0.07 -0.63 5.34 -27.88 -0.15 -0.77 16 4 C -0.16 -1.82 5.14 -104.59 -0.54 -2.35 16 5 C -0.07 -0.82 9.69 -39.61 -0.38 -1.20 16 6 C -0.20 -2.62 9.90 -39.38 -0.39 -3.01 16 7 C 0.22 3.22 6.65 -83.79 -0.56 2.66 16 8 N -0.74 -11.13 5.73 -58.63 -0.34 -11.46 16 9 C 0.12 2.06 4.91 -4.04 -0.02 2.04 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.20 -2.83 9.31 -39.38 -0.37 -3.20 16 21 C -0.07 -0.85 9.69 -39.61 -0.38 -1.23 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.40 5.37 8.49 -40.82 -0.35 5.02 16 32 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 33 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 1.75 6.73 -52.48 -0.35 1.40 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -29.63 331.93 -9.87 -39.50 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.98 Total: 0.87 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -3.27 Total: -24.44 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.40 Total: -37.47 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.63 -9.87 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049537628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.761 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds