Wall clock time and date at job start Mon Mar 30 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47207 * 2 1 4 4 C 1.50700 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.38292 * 119.92221 * 89.99824 * 4 3 2 6 6 C 1.38103 * 120.06781 * 180.02562 * 5 4 3 7 7 C 1.38907 * 119.93251 * 359.97438 * 6 5 4 8 8 N 1.39668 * 120.07688 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00181 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47289 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47131 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47130 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00100 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99896 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99699 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47046 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 120.00269 * 16 14 12 19 19 H 1.48508 * 109.46873 * 240.00304 * 16 14 12 20 20 C 1.38907 * 119.84667 * 0.25939 * 7 6 5 21 21 C 1.38108 * 119.92754 * 359.48722 * 20 7 6 22 22 H 1.08997 * 109.47226 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47261 * 300.00119 * 1 2 3 24 24 H 1.09000 * 109.47321 * 59.99946 * 1 2 3 25 25 H 1.08997 * 109.47261 * 239.99881 * 2 1 3 26 26 H 1.09000 * 109.47321 * 120.00054 * 2 1 3 27 27 H 1.08997 * 109.47107 * 59.99786 * 3 2 1 28 28 H 1.08997 * 109.46714 * 299.99834 * 3 2 1 29 29 H 1.07994 * 119.96476 * 0.04575 * 5 4 3 30 30 H 1.08003 * 120.03201 * 179.97438 * 6 5 4 31 31 H 0.97001 * 120.00568 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.47060 * 300.00571 * 9 8 7 33 33 H 1.09004 * 109.47073 * 60.00060 * 9 8 7 34 34 H 1.09001 * 109.46832 * 299.99854 * 10 9 8 35 35 H 1.08996 * 109.46952 * 59.99873 * 10 9 8 36 36 H 1.09001 * 109.46997 * 299.99574 * 11 10 9 37 37 H 1.09004 * 109.47298 * 59.99717 * 11 10 9 38 38 H 0.97007 * 119.99539 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.03686 * 179.72396 * 20 7 6 40 40 H 1.07998 * 119.96672 * 180.25929 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2373 1.4423 -1.1977 6 6 5.6184 1.4417 -1.2006 7 6 6.3140 1.4419 0.0017 8 7 7.7107 1.4408 0.0023 9 6 8.4428 1.4405 1.2713 10 6 9.9471 1.4399 0.9924 11 6 10.7115 1.4389 2.3177 12 6 12.1933 1.4377 2.0429 13 1 12.5537 1.4380 1.0248 14 6 13.0888 1.4372 3.0913 15 7 12.6499 1.4372 4.3310 16 14 14.9255 1.4364 2.7507 17 1 15.1569 1.4358 1.2838 18 1 15.5405 2.6484 3.3489 19 1 15.5393 0.2234 3.3486 20 6 5.6174 1.4372 1.2035 21 6 4.2363 1.4431 1.1994 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 3.6959 1.4429 -2.1321 30 1 6.1569 1.4411 -2.1368 31 1 8.1961 1.4403 -0.8375 32 1 8.1798 2.3307 1.8427 33 1 8.1785 0.5508 1.8430 34 1 10.2102 0.5498 0.4209 35 1 10.2109 2.3298 0.4209 36 1 10.4485 2.3288 2.8895 37 1 10.4475 0.5488 2.8888 38 1 13.2800 1.4365 5.0686 39 1 6.1552 1.4329 2.1401 40 1 3.6941 1.4437 2.1334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049537628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:06 Heat of formation + Delta-G solvation = -28.420670 kcal Electronic energy + Delta-G solvation = -16644.410350 eV Core-core repulsion = 14035.612501 eV Total energy + Delta-G solvation = -2608.797849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45792 -37.76408 -36.00617 -34.94424 -33.20682 -31.75098 -30.66319 -28.39066 -26.30333 -24.94465 -23.53669 -22.56590 -21.91198 -21.36107 -18.54129 -18.13821 -16.91459 -16.51547 -16.32798 -16.22175 -15.68297 -14.92775 -14.73677 -14.53011 -14.27867 -14.16611 -14.07336 -13.71126 -13.43844 -13.07730 -12.77191 -12.76352 -12.56086 -12.32722 -12.06109 -11.78942 -11.76915 -11.66973 -11.46553 -11.38460 -11.19001 -10.68337 -10.58298 -9.77156 -8.22579 -8.19359 -6.33667 0.59415 0.74977 1.39447 1.39592 1.52885 2.38255 2.57763 3.00648 3.11078 3.98981 4.03283 4.14078 4.19895 4.20945 4.26048 4.36053 4.53436 4.59665 4.62861 4.69837 4.80912 4.93460 4.94046 4.98351 5.08850 5.09730 5.12900 5.21388 5.29425 5.35580 5.47600 5.51227 5.52802 5.60835 5.68464 5.81302 5.90401 6.05127 6.20677 6.46684 6.82844 6.91388 7.35784 8.89610 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.062609 B = 0.002898 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.114199 B = 9657.878005 C = 9952.812407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.066 4.066 4 C -0.153 4.153 5 C -0.072 4.072 6 C -0.204 4.204 7 C 0.198 3.802 8 N -0.745 5.745 9 C 0.138 3.862 10 C -0.103 4.103 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.061 0.939 14 C -0.002 4.002 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.218 4.218 21 C -0.076 4.076 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.404 0.596 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.059 0.941 36 H -0.005 1.005 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.111 0.889 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.424 -0.786 -10.968 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.104 4.104 4 C -0.155 4.155 5 C -0.091 4.091 6 C -0.227 4.227 7 C 0.094 3.906 8 N -0.374 5.374 9 C 0.014 3.986 10 C -0.141 4.141 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.200 4.200 15 N -0.573 5.573 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.240 4.240 21 C -0.095 4.095 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.239 0.761 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.277 -0.786 -10.602 23.785 hybrid contribution 1.492 -0.022 0.194 1.505 sum -19.785 -0.808 -10.409 22.370 Atomic orbital electron populations 1.21776 0.94881 1.01925 1.02203 1.21509 0.96230 0.96127 1.01732 1.20490 0.89568 0.97270 1.03035 1.19883 0.96597 1.06295 0.92700 1.21007 0.92944 0.96845 0.98284 1.20793 0.95044 1.10789 0.96067 1.18130 0.83701 0.94141 0.94615 1.44769 1.02539 1.81944 1.08176 1.21190 0.91516 0.99991 0.85937 1.21560 0.92341 1.01331 0.98868 1.18931 0.94315 0.95175 0.92770 1.21701 0.92761 1.50538 0.93076 0.92037 1.26003 1.04411 0.94735 0.94860 1.70102 1.36298 1.51633 0.99283 0.85376 0.78985 0.77782 0.78763 1.18543 1.20374 1.20381 1.20810 0.95259 1.11473 0.96505 1.20963 0.92815 0.97214 0.98481 0.92533 0.92475 0.92125 0.92322 0.92889 0.91094 0.90448 0.84178 0.85061 0.76076 0.93340 0.93351 0.92256 0.92240 0.98706 0.98707 0.92721 0.87134 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 3 C -0.07 -1.05 5.34 29.85 0.16 -0.89 16 4 C -0.15 -3.27 5.14 -19.84 -0.10 -3.37 16 5 C -0.07 -1.53 9.69 22.25 0.22 -1.32 16 6 C -0.20 -4.94 9.90 22.40 0.22 -4.72 16 7 C 0.20 5.68 6.65 38.21 0.25 5.93 16 8 N -0.74 -22.08 5.73 -339.41 -1.95 -24.03 16 9 C 0.14 4.80 4.91 86.38 0.42 5.23 16 10 C -0.10 -4.13 5.27 30.59 0.16 -3.97 16 11 C 0.03 1.35 4.97 29.85 0.15 1.50 16 12 C -0.54 -30.78 9.11 25.60 0.23 -30.54 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 15 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 16 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C -0.22 -6.28 9.31 22.40 0.21 -6.07 16 21 C -0.08 -1.86 9.69 22.25 0.22 -1.64 16 22 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 28 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 29 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.40 10.59 8.49 -92.71 -0.79 9.81 16 32 H 0.05 1.74 7.96 -2.39 -0.02 1.72 16 33 H 0.05 1.74 7.94 -2.38 -0.02 1.72 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 38 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 39 H 0.11 3.33 6.73 -2.91 -0.02 3.31 16 40 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -63.46 331.93 4.06 -59.40 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.20 Total: 17.13 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 3.50 Total: -42.16 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.66 Total: -80.58 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -63.46 4.06 -59.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049537628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.980 kcal (2) G-P(sol) polarization free energy of solvation -63.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds